RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 TOM1L2Q6ZVM7 507 aa29.73■■■□□ 2.35
SMCO4-201ENST00000298966 BCL11BQ9C0K0 894 aaPredicted RBP29.73■■■□□ 2.35
SMCO4-201ENST00000298966 ANO8Q9HCE9 1232 aaPredicted RBP29.72■■■□□ 2.35
SMCO4-201ENST00000298966 CABP2Q9NPB3 220 aa29.71■■■□□ 2.35
SMCO4-201ENST00000298966 SLIT3O75094 1523 aa29.69■■■□□ 2.34
SMCO4-201ENST00000298966 CENPJQ9HC77 1338 aaPredicted RBP29.69■■■□□ 2.34
SMCO4-201ENST00000298966 NBPF1Q3BBV0 1214 aa29.68■■■□□ 2.34
SMCO4-201ENST00000298966 USP6P35125 1406 aa29.68■■■□□ 2.34
SMCO4-201ENST00000298966 WNK3Q9BYP7 1800 aa29.68■■■□□ 2.34
SMCO4-201ENST00000298966 CDCA7Q9BWT1 371 aaPredicted RBP29.67■■■□□ 2.34
SMCO4-201ENST00000298966 AKAP12Q02952 1782 aa29.67■■■□□ 2.34
SMCO4-201ENST00000298966 PTF1AQ7RTS3 328 aa29.66■■■□□ 2.34
SMCO4-201ENST00000298966 ZBTB7AO95365 584 aa29.65■■■□□ 2.34
SMCO4-201ENST00000298966 WDR17Q8IZU2 1322 aa29.65■■■□□ 2.34
SMCO4-201ENST00000298966 COL18A1P39060 1754 aa29.64■■■□□ 2.34
SMCO4-201ENST00000298966 MARCH10Q8NA82 808 aaPredicted RBP29.64■■■□□ 2.34
SMCO4-201ENST00000298966 PDGFDQ9GZP0 370 aaPredicted RBP29.64■■■□□ 2.34
SMCO4-201ENST00000298966 CABP1Q9NZU7 370 aa29.64■■■□□ 2.34
SMCO4-201ENST00000298966 BCL9O00512 1426 aa29.63■■■□□ 2.33
SMCO4-201ENST00000298966 PROM2Q8N271 834 aa29.63■■■□□ 2.33
SMCO4-201ENST00000298966 L3MBTL2Q969R5 705 aa29.63■■■□□ 2.33
SMCO4-201ENST00000298966 MYOM1P52179 1685 aa29.63■■■□□ 2.33
SMCO4-201ENST00000298966 STK32BQ9NY57 414 aa29.62■■■□□ 2.33
SMCO4-201ENST00000298966 QRICH2Q9H0J4 1663 aa29.62■■■□□ 2.33
SMCO4-201ENST00000298966 ATF5Q9Y2D1 282 aaPredicted RBP29.6■■■□□ 2.33
SMCO4-201ENST00000298966 AXIN2Q9Y2T1 843 aa29.6■■■□□ 2.33
SMCO4-201ENST00000298966 PIK3C2AO00443 1686 aa29.6■■■□□ 2.33
SMCO4-201ENST00000298966 PTGER2P43116 358 aa29.59■■■□□ 2.33
SMCO4-201ENST00000298966 CPSF1Q10570 1443 aaKnown RBP29.59■■■□□ 2.33
SMCO4-201ENST00000298966 TXNRD1Q16881 649 aa29.58■■■□□ 2.33
SMCO4-201ENST00000298966 CSB-PGBD3P0DP91 1061 aa29.57■■■□□ 2.32
SMCO4-201ENST00000298966 CARD10Q9BWT7 1032 aa29.57■■■□□ 2.32
SMCO4-201ENST00000298966 SLC15A2Q16348 729 aa29.56■■■□□ 2.32
SMCO4-201ENST00000298966 KCNH5Q8NCM2 988 aa29.56■■■□□ 2.32
SMCO4-201ENST00000298966 RGPD5Q99666 1765 aa29.56■■■□□ 2.32
SMCO4-201ENST00000298966 EXOC5O00471 708 aa29.55■■■□□ 2.32
SMCO4-201ENST00000298966 ARHGEF25Q86VW2 580 aa29.55■■■□□ 2.32
SMCO4-201ENST00000298966 ZNF784Q8NCA9 323 aaPredicted RBP29.55■■■□□ 2.32
SMCO4-201ENST00000298966 FHDC1Q9C0D6 1143 aaPredicted RBP29.53■■■□□ 2.32
SMCO4-201ENST00000298966 SYT17Q9BSW7 474 aa29.52■■■□□ 2.32
SMCO4-201ENST00000298966 CHD4Q14839 1912 aa29.51■■■□□ 2.32
SMCO4-201ENST00000298966 MTFR1LQ9H019 292 aa29.51■■■□□ 2.31
SMCO4-201ENST00000298966 EVC2Q86UK5 1308 aa29.5■■■□□ 2.31
SMCO4-201ENST00000298966 SOX12O15370 315 aa29.5■■■□□ 2.31
SMCO4-201ENST00000298966 CCDC7Q96M83 1385 aa29.5■■■□□ 2.31
SMCO4-201ENST00000298966 TTC21BQ7Z4L5 1316 aa29.49■■■□□ 2.31
SMCO4-201ENST00000298966 ZNF692Q9BU19 519 aaPredicted RBP29.49■■■□□ 2.31
SMCO4-201ENST00000298966 TRPM1Q7Z4N2 1603 aa29.47■■■□□ 2.31
SMCO4-201ENST00000298966 TNS2Q63HR2 1409 aa29.46■■■□□ 2.31
SMCO4-201ENST00000298966 TTC21AQ8NDW8 1320 aa29.45■■■□□ 2.31
SMCO4-201ENST00000298966 NHSQ6T4R5 1651 aa29.44■■■□□ 2.3
SMCO4-201ENST00000298966 ZNF316A6NFI3 1004 aaPredicted RBP29.44■■■□□ 2.3
SMCO4-201ENST00000298966 SGIP1Q9BQI5 828 aa29.43■■■□□ 2.3
SMCO4-201ENST00000298966 ARXQ96QS3 562 aa29.42■■■□□ 2.3
SMCO4-201ENST00000298966 NFAT5O94916 1531 aa29.41■■■□□ 2.3
SMCO4-201ENST00000298966 ABCC6O95255 1503 aa29.41■■■□□ 2.3
SMCO4-201ENST00000298966 KAT6BQ8WYB5 2073 aa29.4■■■□□ 2.3
SMCO4-201ENST00000298966 ACSBG1Q96GR2 724 aa29.4■■■□□ 2.3
SMCO4-201ENST00000298966 SENP3-EIF4A1A0A087X0R7 540 aa29.39■■■□□ 2.3
SMCO4-201ENST00000298966 KTN1Q86UP2 1357 aaKnown RBP29.37■■■□□ 2.29
SMCO4-201ENST00000298966 PAPPAQ13219 1627 aa29.36■■■□□ 2.29
SMCO4-201ENST00000298966 MAP3K5Q99683 1374 aa29.36■■■□□ 2.29
SMCO4-201ENST00000298966 C1QTNF8P60827 252 aa29.35■■■□□ 2.29
SMCO4-201ENST00000298966 BTAF1O14981 1849 aa29.34■■■□□ 2.29
SMCO4-201ENST00000298966 NLRP2Q9NX02 1062 aa29.34■■■□□ 2.29
SMCO4-201ENST00000298966 UTRNP46939 3433 aa29.33■■■□□ 2.29
SMCO4-201ENST00000298966 IL2RBP14784 551 aa29.32■■■□□ 2.28
SMCO4-201ENST00000298966 ERBB3P21860 1342 aa29.31■■■□□ 2.28
SMCO4-201ENST00000298966 MON2Q7Z3U7 1717 aa29.31■■■□□ 2.28
SMCO4-201ENST00000298966 GPR162Q16538 588 aa29.3■■■□□ 2.28
SMCO4-201ENST00000298966 ZNF827Q17R98 1081 aa29.29■■■□□ 2.28
SMCO4-201ENST00000298966 USP31Q70CQ4 1352 aa29.27■■■□□ 2.28
SMCO4-201ENST00000298966 LTN1O94822 1766 aa29.27■■■□□ 2.28
SMCO4-201ENST00000298966 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.27■■■□□ 2.28
SMCO4-201ENST00000298966 ROCK2O75116 1388 aaKnown RBP29.26■■■□□ 2.28
SMCO4-201ENST00000298966 USP54Q70EL1 1684 aa29.25■■■□□ 2.27
SMCO4-201ENST00000298966 KLHL34Q8N239 644 aa29.25■■■□□ 2.27
SMCO4-201ENST00000298966 SLC16A10Q8TF71 515 aa29.25■■■□□ 2.27
SMCO4-201ENST00000298966 LRRC4BQ9NT99 713 aa29.25■■■□□ 2.27
SMCO4-201ENST00000298966 POLD1P28340 1107 aa29.24■■■□□ 2.27
SMCO4-201ENST00000298966 ANKRD24Q8TF21 1146 aa29.24■■■□□ 2.27
SMCO4-201ENST00000298966 QSER1Q2KHR3 1735 aa29.23■■■□□ 2.27
SMCO4-201ENST00000298966 EIF4G2P78344 907 aaKnown RBP eCLIP29.23■■■□□ 2.27
SMCO4-201ENST00000298966 NME9Q86XW9 330 aa29.22■■■□□ 2.27
SMCO4-201ENST00000298966 SLC27A3Q5K4L6 730 aa29.21■■■□□ 2.27
SMCO4-201ENST00000298966 AKT1S1Q96B36 256 aa29.21■■■□□ 2.27
SMCO4-201ENST00000298966 GIGYF1O75420 1035 aaPredicted RBP29.2■■■□□ 2.26
SMCO4-201ENST00000298966 PELP1Q8IZL8 1130 aaKnown RBP29.2■■■□□ 2.26
SMCO4-201ENST00000298966 COL24A1Q17RW2 1714 aa29.17■■■□□ 2.26
SMCO4-201ENST00000298966 PNPLA7Q6ZV29 1317 aa29.16■■■□□ 2.26
SMCO4-201ENST00000298966 SBNO2Q9Y2G9 1366 aa29.15■■■□□ 2.26
SMCO4-201ENST00000298966 HDGFL2Q7Z4V5 671 aaPredicted RBP29.15■■■□□ 2.26
SMCO4-201ENST00000298966 DDX54Q8TDD1 881 aaKnown RBP29.15■■■□□ 2.26
SMCO4-201ENST00000298966 TFCP2L1Q9NZI6 479 aa29.15■■■□□ 2.26
SMCO4-201ENST00000298966 TMC1Q8TDI8 760 aa29.14■■■□□ 2.26
SMCO4-201ENST00000298966 CD163L1Q9NR16 1453 aa29.13■■■□□ 2.25
SMCO4-201ENST00000298966 CARD11Q9BXL7 1154 aa29.13■■■□□ 2.25
SMCO4-201ENST00000298966 TUBGCP6Q96RT7 1819 aa29.13■■■□□ 2.25
SMCO4-201ENST00000298966 FAM208AQ9UK61 1670 aaKnown RBP29.12■■■□□ 2.25
SMCO4-201ENST00000298966 SYTL4Q96C24 671 aaPredicted RBP29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms