RNA–Protein interactions for RNA: ENST00000291458.9

CCDC58-201, Transcript of coiled-coil domain containing 58, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC58, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58-201ENST00000291458 USP35Q9P2H5 1018 aa13.78□□□□□ -0.2
CCDC58-201ENST00000291458 SLIT3O75094 1523 aa13.77□□□□□ -0.21
CCDC58-201ENST00000291458 RGPD5Q99666 1765 aa13.76□□□□□ -0.21
CCDC58-201ENST00000291458 CAMTA1Q9Y6Y1 1673 aa13.76□□□□□ -0.21
CCDC58-201ENST00000291458 CD163L1Q9NR16 1453 aa13.76□□□□□ -0.21
CCDC58-201ENST00000291458 TTC21BQ7Z4L5 1316 aa13.76□□□□□ -0.21
CCDC58-201ENST00000291458 CPSF1Q10570 1443 aaKnown RBP13.75□□□□□ -0.21
CCDC58-201ENST00000291458 SSH2Q76I76 1423 aa13.75□□□□□ -0.21
CCDC58-201ENST00000291458 GCP02774 474 aa13.75□□□□□ -0.21
CCDC58-201ENST00000291458 EVA1CP58658 441 aa13.75□□□□□ -0.21
CCDC58-201ENST00000291458 SLC12A5Q9H2X9 1139 aa13.75□□□□□ -0.21
CCDC58-201ENST00000291458 ZRANB1Q9UGI0 708 aa13.75□□□□□ -0.21
CCDC58-201ENST00000291458 THSD7AQ9UPZ6 1657 aa13.75□□□□□ -0.21
CCDC58-201ENST00000291458 A0A1W2PP64 1363 aa13.74□□□□□ -0.21
CCDC58-201ENST00000291458 BRD4O60885 1362 aaPredicted RBP13.74□□□□□ -0.21
CCDC58-201ENST00000291458 SPATA31A5Q5VU36 1347 aa13.74□□□□□ -0.21
CCDC58-201ENST00000291458 SPATA31A7Q8IWB4 1347 aa13.74□□□□□ -0.21
CCDC58-201ENST00000291458 HDGFL2Q7Z4V5 671 aaPredicted RBP13.74□□□□□ -0.21
CCDC58-201ENST00000291458 LTN1O94822 1766 aa13.73□□□□□ -0.21
CCDC58-201ENST00000291458 CPDO75976 1380 aa13.73□□□□□ -0.21
CCDC58-201ENST00000291458 FAM182BQ5T319 152 aa13.73□□□□□ -0.21
CCDC58-201ENST00000291458 NME9Q86XW9 330 aa13.73□□□□□ -0.21
CCDC58-201ENST00000291458 TESK2Q96S53 571 aa13.73□□□□□ -0.21
CCDC58-201ENST00000291458 COL5A2P05997 1499 aaPredicted RBP13.73□□□□□ -0.21
CCDC58-201ENST00000291458 TTC21AQ8NDW8 1320 aa13.72□□□□□ -0.21
CCDC58-201ENST00000291458 LARP1Q6PKG0 1096 aaKnown RBP13.72□□□□□ -0.21
CCDC58-201ENST00000291458 CHRDL2Q6WN34 429 aa13.72□□□□□ -0.21
CCDC58-201ENST00000291458 KRT27Q7Z3Y8 459 aa13.72□□□□□ -0.21
CCDC58-201ENST00000291458 COL18A1P39060 1754 aa13.71□□□□□ -0.21
CCDC58-201ENST00000291458 SPATA31A1Q5TZJ5 1347 aa13.71□□□□□ -0.21
CCDC58-201ENST00000291458 CLSPNQ9HAW4 1339 aa13.71□□□□□ -0.21
CCDC58-201ENST00000291458 NFAT5O94916 1531 aa13.71□□□□□ -0.21
CCDC58-201ENST00000291458 WNK3Q9BYP7 1800 aa13.71□□□□□ -0.22
CCDC58-201ENST00000291458 MYOM1P52179 1685 aa13.7□□□□□ -0.22
CCDC58-201ENST00000291458 USP54Q70EL1 1684 aa13.7□□□□□ -0.22
CCDC58-201ENST00000291458 PRR29P0C7W0 189 aa13.7□□□□□ -0.22
CCDC58-201ENST00000291458 POLR3GLQ9BT43 218 aa13.7□□□□□ -0.22
CCDC58-201ENST00000291458 TERF2IPQ9NYB0 399 aa13.7□□□□□ -0.22
CCDC58-201ENST00000291458 EDC4Q6P2E9 1401 aaKnown RBP13.7□□□□□ -0.22
CCDC58-201ENST00000291458 TMF1P82094 1093 aa13.69□□□□□ -0.22
CCDC58-201ENST00000291458 CSB-PGBD3P0DP91 1061 aa13.68□□□□□ -0.22
CCDC58-201ENST00000291458 KIF20BQ96Q89 1820 aa13.68□□□□□ -0.22
CCDC58-201ENST00000291458 RGPD1P0DJD0 1748 aa13.67□□□□□ -0.22
CCDC58-201ENST00000291458 BLMP54132 1417 aaPredicted RBP13.67□□□□□ -0.22
CCDC58-201ENST00000291458 SF3B2Q13435 895 aaKnown RBP13.67□□□□□ -0.22
CCDC58-201ENST00000291458 TOM1L2Q6ZVM7 507 aa13.67□□□□□ -0.22
CCDC58-201ENST00000291458 LRRC37A3O60309 1634 aa13.67□□□□□ -0.22
CCDC58-201ENST00000291458 AATKQ6ZMQ8 1374 aa13.67□□□□□ -0.22
CCDC58-201ENST00000291458 CRB1P82279 1406 aa13.66□□□□□ -0.22
CCDC58-201ENST00000291458 DEFB132Q7Z7B7 95 aa13.66□□□□□ -0.22
CCDC58-201ENST00000291458 KCNH5Q8NCM2 988 aa13.66□□□□□ -0.22
CCDC58-201ENST00000291458 TNS1Q9HBL0 1735 aaKnown RBP13.66□□□□□ -0.22
CCDC58-201ENST00000291458 NINLQ9Y2I6 1382 aa13.66□□□□□ -0.22
CCDC58-201ENST00000291458 PARP4Q9UKK3 1724 aaKnown RBP13.65□□□□□ -0.22
CCDC58-201ENST00000291458 ONECUT3O60422 494 aaPredicted RBP13.65□□□□□ -0.22
CCDC58-201ENST00000291458 TCP11L2Q8N4U5 519 aa13.65□□□□□ -0.22
CCDC58-201ENST00000291458 AXIN2Q9Y2T1 843 aa13.65□□□□□ -0.22
CCDC58-201ENST00000291458 OVOS2A0A0J9YW53 1432 aa13.64□□□□□ -0.23
CCDC58-201ENST00000291458 OVOS2Q6IE36 1432 aa13.64□□□□□ -0.23
CCDC58-201ENST00000291458 USP31Q70CQ4 1352 aa13.64□□□□□ -0.23
CCDC58-201ENST00000291458 ANKRD36BQ8N2N9 1353 aa13.64□□□□□ -0.23
CCDC58-201ENST00000291458 ARHGEF25Q86VW2 580 aa13.64□□□□□ -0.23
CCDC58-201ENST00000291458 TIMELESSQ9UNS1 1208 aa13.64□□□□□ -0.23
CCDC58-201ENST00000291458 PDE3BQ13370 1112 aa13.62□□□□□ -0.23
CCDC58-201ENST00000291458 WDR17Q8IZU2 1322 aa13.62□□□□□ -0.23
CCDC58-201ENST00000291458 ABCC6O95255 1503 aa13.61□□□□□ -0.23
CCDC58-201ENST00000291458 HSPA5P11021 654 aaKnown RBP13.61□□□□□ -0.23
CCDC58-201ENST00000291458 FBLN1P23142 703 aa13.61□□□□□ -0.23
CCDC58-201ENST00000291458 BARGINQ6ZT62 677 aa13.61□□□□□ -0.23
CCDC58-201ENST00000291458 LTV1Q96GA3 475 aaPredicted RBP13.61□□□□□ -0.23
CCDC58-201ENST00000291458 COG3Q96JB2 828 aa13.61□□□□□ -0.23
CCDC58-201ENST00000291458 PUS7Q96PZ0 661 aaKnown RBP13.61□□□□□ -0.23
CCDC58-201ENST00000291458 GGNBP2Q9H3C7 697 aa13.61□□□□□ -0.23
CCDC58-201ENST00000291458 NSD3Q9BZ95 1437 aa13.61□□□□□ -0.23
CCDC58-201ENST00000291458 TRIM37O94972 964 aa13.6□□□□□ -0.23
CCDC58-201ENST00000291458 FXR2P51116 673 aaKnown RBP eCLIP13.6□□□□□ -0.23
CCDC58-201ENST00000291458 CDCA8Q53HL2 280 aa13.6□□□□□ -0.23
CCDC58-201ENST00000291458 CCDC125Q86Z20 511 aa13.6□□□□□ -0.23
CCDC58-201ENST00000291458 RGPD2P0DJD1 1756 aa13.6□□□□□ -0.23
CCDC58-201ENST00000291458 EP400Q96L91 3159 aa13.6□□□□□ -0.23
CCDC58-201ENST00000291458 SLC24A1O60721 1099 aa13.59□□□□□ -0.23
CCDC58-201ENST00000291458 BAG6P46379 1132 aa13.59□□□□□ -0.23
CCDC58-201ENST00000291458 NLRP2Q9NX02 1062 aa13.59□□□□□ -0.23
CCDC58-201ENST00000291458 EIF4G2P78344 907 aaKnown RBP eCLIP13.58□□□□□ -0.24
CCDC58-201ENST00000291458 EN1Q05925 392 aaPredicted RBP13.58□□□□□ -0.24
CCDC58-201ENST00000291458 THRAP3Q9Y2W1 955 aaKnown RBP13.58□□□□□ -0.24
CCDC58-201ENST00000291458 PEAK1Q9H792 1746 aa13.57□□□□□ -0.24
CCDC58-201ENST00000291458 DDB1Q16531 1140 aa13.57□□□□□ -0.24
CCDC58-201ENST00000291458 ANKRD24Q8TF21 1146 aa13.57□□□□□ -0.24
CCDC58-201ENST00000291458 ERBB3P21860 1342 aa13.57□□□□□ -0.24
CCDC58-201ENST00000291458 SBF2Q86WG5 1849 aa13.57□□□□□ -0.24
CCDC58-201ENST00000291458 FAM208AQ9UK61 1670 aaKnown RBP13.56□□□□□ -0.24
CCDC58-201ENST00000291458 AMPHP49418 695 aa13.56□□□□□ -0.24
CCDC58-201ENST00000291458 VASPP50552 380 aaPredicted RBP13.56□□□□□ -0.24
CCDC58-201ENST00000291458 RRS1Q15050 365 aaKnown RBP13.56□□□□□ -0.24
CCDC58-201ENST00000291458 FAM196AQ6ZSG2 479 aa13.56□□□□□ -0.24
CCDC58-201ENST00000291458 MAP3K19Q56UN5 1328 aa13.56□□□□□ -0.24
CCDC58-201ENST00000291458 OVOS2A0A0G2JMS6 1433 aa13.56□□□□□ -0.24
CCDC58-201ENST00000291458 CARD10Q9BWT7 1032 aa13.55□□□□□ -0.24
CCDC58-201ENST00000291458 CCDC7Q96M83 1385 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms