RNA–Protein interactions for RNA: ENST00000291458.9

CCDC58-201, Transcript of coiled-coil domain containing 58, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC58, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58-201ENST00000291458 AEBP2Q6ZN18 517 aaPredicted RBP25.31■■□□□ 1.64
CCDC58-201ENST00000291458 CHIC1Q5VXU3 224 aa24.76■■□□□ 1.55
CCDC58-201ENST00000291458 NISCHQ9Y2I1 1504 aa24■■□□□ 1.43
CCDC58-201ENST00000291458 PHF23Q9BUL5 403 aaPredicted RBP21.72■■□□□ 1.07
CCDC58-201ENST00000291458 SENP3Q9H4L4 574 aaPredicted RBP21.56■■□□□ 1.04
CCDC58-201ENST00000291458 CCDC180Q9P1Z9 1646 aa21.45■■□□□ 1.02
CCDC58-201ENST00000291458 ABCC9O60706 1549 aa21.24■□□□□ 0.99
CCDC58-201ENST00000291458 RB1CC1Q8TDY2 1594 aa20.27■□□□□ 0.84
CCDC58-201ENST00000291458 DCAF8L2P0C7V8 631 aa20.23■□□□□ 0.83
CCDC58-201ENST00000291458 NACADO15069 1562 aa20.15■□□□□ 0.82
CCDC58-201ENST00000291458 PLPPR3Q6T4P5 718 aa20.12■□□□□ 0.81
CCDC58-201ENST00000291458 ZCCHC6Q5VYS8 1495 aaKnown RBP19.98■□□□□ 0.79
CCDC58-201ENST00000291458 FOXD1Q16676 465 aa19.96■□□□□ 0.79
CCDC58-201ENST00000291458 UNC13AQ9UPW8 1703 aa19.92■□□□□ 0.78
CCDC58-201ENST00000291458 MYO15BQ96JP2 1530 aa19.86■□□□□ 0.77
CCDC58-201ENST00000291458 PABPN1Q86U42 306 aaKnown RBP eCLIP19.79■□□□□ 0.76
CCDC58-201ENST00000291458 DCAF1Q9Y4B6 1507 aa19.76■□□□□ 0.75
CCDC58-201ENST00000291458 SCRIBQ14160 1630 aa19.69■□□□□ 0.74
CCDC58-201ENST00000291458 BICRAQ9NZM4 1560 aa19.67■□□□□ 0.74
CCDC58-201ENST00000291458 DNAJC5BQ9UF47 199 aa19.55■□□□□ 0.72
CCDC58-201ENST00000291458 SHROOM4Q9ULL8 1493 aa19.32■□□□□ 0.68
CCDC58-201ENST00000291458 EIF4G1Q04637 1599 aaKnown RBP19.18■□□□□ 0.66
CCDC58-201ENST00000291458 CC2D2AQ9P2K1 1620 aa19.17■□□□□ 0.66
CCDC58-201ENST00000291458 PPP6R1Q9UPN7 881 aa19.15■□□□□ 0.66
CCDC58-201ENST00000291458 ADRA2BP18089 450 aa19.14■□□□□ 0.65
CCDC58-201ENST00000291458 CECR2Q9BXF3 1484 aa19.04■□□□□ 0.64
CCDC58-201ENST00000291458 PIAS4Q8N2W9 510 aaPredicted RBP18.82■□□□□ 0.6
CCDC58-201ENST00000291458 SMARCA4P51532 1647 aa18.73■□□□□ 0.59
CCDC58-201ENST00000291458 BAZ1AQ9NRL2 1556 aaPredicted RBP18.63■□□□□ 0.57
CCDC58-201ENST00000291458 ATAD2BQ9ULI0 1458 aa18.6■□□□□ 0.57
CCDC58-201ENST00000291458 SMARCA2P51531 1590 aa18.58■□□□□ 0.56
CCDC58-201ENST00000291458 NCAPD3P42695 1498 aa18.55■□□□□ 0.56
CCDC58-201ENST00000291458 MROH2BQ7Z745 1585 aa18.55■□□□□ 0.56
CCDC58-201ENST00000291458 HMGXB3Q12766 1538 aa18.52■□□□□ 0.56
CCDC58-201ENST00000291458 BAZ1BQ9UIG0 1483 aaKnown RBP18.5■□□□□ 0.55
CCDC58-201ENST00000291458 MSH5O43196 834 aa18.48■□□□□ 0.55
CCDC58-201ENST00000291458 PEG3Q9GZU2 1588 aa18.43■□□□□ 0.54
CCDC58-201ENST00000291458 WIZO95785 1651 aa18.4■□□□□ 0.54
CCDC58-201ENST00000291458 NESP48681 1621 aa18.32■□□□□ 0.52
CCDC58-201ENST00000291458 ERCC6Q03468 1493 aa18.32■□□□□ 0.52
CCDC58-201ENST00000291458 RSF1Q96T23 1441 aaPredicted RBP18.21■□□□□ 0.51
CCDC58-201ENST00000291458 LAMC3Q9Y6N6 1575 aa18.16■□□□□ 0.5
CCDC58-201ENST00000291458 KIF21AQ7Z4S6 1674 aa18.15■□□□□ 0.5
CCDC58-201ENST00000291458 TOP2AP11388 1531 aaKnown RBP18.13■□□□□ 0.49
CCDC58-201ENST00000291458 CUX2O14529 1486 aa18.07■□□□□ 0.48
CCDC58-201ENST00000291458 THOC2Q8NI27 1593 aaKnown RBP18.07■□□□□ 0.48
CCDC58-201ENST00000291458 CADPSQ9ULU8 1353 aa18.03■□□□□ 0.48
CCDC58-201ENST00000291458 PDS5BQ9NTI5 1447 aa18.01■□□□□ 0.47
CCDC58-201ENST00000291458 MRC2Q9UBG0 1479 aa17.91■□□□□ 0.46
CCDC58-201ENST00000291458 CEP164Q9UPV0 1460 aa17.91■□□□□ 0.46
CCDC58-201ENST00000291458 FANCD2Q9BXW9 1451 aa17.9■□□□□ 0.46
CCDC58-201ENST00000291458 CFTRP13569 1480 aa17.89■□□□□ 0.45
CCDC58-201ENST00000291458 PRDM2Q13029 1718 aa17.89■□□□□ 0.45
CCDC58-201ENST00000291458 CCDC88BA6NC98 1476 aa17.88■□□□□ 0.45
CCDC58-201ENST00000291458 WDR62O43379 1518 aa17.84■□□□□ 0.45
CCDC58-201ENST00000291458 URB2Q14146 1524 aaKnown RBP17.75■□□□□ 0.43
CCDC58-201ENST00000291458 SUPT5HO00267 1087 aaKnown RBP17.73■□□□□ 0.43
CCDC58-201ENST00000291458 PPP4R3CPQ6ZMV5 832 aa17.69■□□□□ 0.42
CCDC58-201ENST00000291458 DNAJC5Q9H3Z4 198 aa17.67■□□□□ 0.42
CCDC58-201ENST00000291458 SCAF1Q9H7N4 1312 aaKnown RBP17.62■□□□□ 0.41
CCDC58-201ENST00000291458 TOPBP1Q92547 1522 aa17.59■□□□□ 0.41
CCDC58-201ENST00000291458 DNMBPQ6XZF7 1577 aa17.57■□□□□ 0.4
CCDC58-201ENST00000291458 ZNF608Q9ULD9 1512 aaPredicted RBP17.49■□□□□ 0.39
CCDC58-201ENST00000291458 IFT140Q96RY7 1462 aa17.49■□□□□ 0.39
CCDC58-201ENST00000291458 ABCC8Q09428 1581 aa17.48■□□□□ 0.39
CCDC58-201ENST00000291458 EIF4G3O43432 1585 aaKnown RBP17.45■□□□□ 0.38
CCDC58-201ENST00000291458 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
CCDC58-201ENST00000291458 CUX1P39880 1505 aa17.42■□□□□ 0.38
CCDC58-201ENST00000291458 TARBP1Q13395 1621 aaKnown RBP17.41■□□□□ 0.38
CCDC58-201ENST00000291458 RAD54L2Q9Y4B4 1467 aa17.4■□□□□ 0.38
CCDC58-201ENST00000291458 FGD5Q6ZNL6 1462 aa17.39■□□□□ 0.37
CCDC58-201ENST00000291458 MAPK8IP2Q13387 824 aaPredicted RBP17.36■□□□□ 0.37
CCDC58-201ENST00000291458 AQRO60306 1485 aaKnown RBP eCLIP17.35■□□□□ 0.37
CCDC58-201ENST00000291458 SOGA1O94964 1423 aa17.32■□□□□ 0.36
CCDC58-201ENST00000291458 CHD1O14646 1710 aa17.32■□□□□ 0.36
CCDC58-201ENST00000291458 WDR97A6NE52 1622 aa17.29■□□□□ 0.36
CCDC58-201ENST00000291458 TDRD9Q8NDG6 1382 aaKnown RBP17.28■□□□□ 0.36
CCDC58-201ENST00000291458 NCBP3Q53F19 620 aaKnown RBP17.27■□□□□ 0.36
CCDC58-201ENST00000291458 OSCARQ8IYS5 282 aa17.26■□□□□ 0.35
CCDC58-201ENST00000291458 SYNJ1O43426 1573 aa17.25■□□□□ 0.35
CCDC58-201ENST00000291458 PBRM1Q86U86 1689 aa17.23■□□□□ 0.35
CCDC58-201ENST00000291458 CNKSR2Q8WXI2 1034 aa17.23■□□□□ 0.35
CCDC58-201ENST00000291458 SNAPC4Q5SXM2 1469 aa17.23■□□□□ 0.35
CCDC58-201ENST00000291458 BIVM-ERCC5R4GMW8 1640 aa17.22■□□□□ 0.35
CCDC58-201ENST00000291458 FBLN2P98095 1184 aa17.22■□□□□ 0.35
CCDC58-201ENST00000291458 KCNA4P22459 653 aa17.21■□□□□ 0.35
CCDC58-201ENST00000291458 TRIM41Q8WV44 630 aa17.21■□□□□ 0.35
CCDC58-201ENST00000291458 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.34
CCDC58-201ENST00000291458 TOP2BQ02880 1626 aa17.2■□□□□ 0.34
CCDC58-201ENST00000291458 DMRT2Q9Y5R5 561 aa17.19■□□□□ 0.34
CCDC58-201ENST00000291458 ABCA5Q8WWZ7 1642 aa17.16■□□□□ 0.34
CCDC58-201ENST00000291458 GRIN2BQ13224 1484 aa17.15■□□□□ 0.34
CCDC58-201ENST00000291458 ABCA10Q8WWZ4 1543 aa17.15■□□□□ 0.34
CCDC58-201ENST00000291458 RIMBP3CA6NJZ7 1639 aa17.14■□□□□ 0.33
CCDC58-201ENST00000291458 RIMBP3BA6NNM3 1639 aa17.14■□□□□ 0.33
CCDC58-201ENST00000291458 RIMBP3Q9UFD9 1639 aa17.14■□□□□ 0.33
CCDC58-201ENST00000291458 GAPVD1Q14C86 1478 aa17.14■□□□□ 0.33
CCDC58-201ENST00000291458 MAGI1Q96QZ7 1491 aaPredicted RBP17.12■□□□□ 0.33
CCDC58-201ENST00000291458 ARHGEF11O15085 1522 aa17.09■□□□□ 0.33
CCDC58-201ENST00000291458 CHMP7Q8WUX9 453 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms