RNA–Protein interactions for RNA: ENST00000278412.6

SSRP1-201, Transcript of structure specific recognition protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSRP1, Length 2,819 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-201ENST00000278412 TRIM35Q9UPQ4 493 aa15.44■□□□□ 0.06
SSRP1-201ENST00000278412 HOXC9P31274 260 aa15.43■□□□□ 0.06
SSRP1-201ENST00000278412 GOLGA2Q08379 1002 aa15.43■□□□□ 0.06
SSRP1-201ENST00000278412 FAM83GA6ND36 823 aa15.42■□□□□ 0.06
SSRP1-201ENST00000278412 GCP02774 474 aa15.42■□□□□ 0.06
SSRP1-201ENST00000278412 SLFN5Q08AF3 891 aa15.42■□□□□ 0.06
SSRP1-201ENST00000278412 DCTN1Q14203 1278 aa15.42■□□□□ 0.06
SSRP1-201ENST00000278412 AXIN2Q9Y2T1 843 aa15.41■□□□□ 0.06
SSRP1-201ENST00000278412 LTN1O94822 1766 aa15.41■□□□□ 0.06
SSRP1-201ENST00000278412 NFAT5O94916 1531 aa15.41■□□□□ 0.06
SSRP1-201ENST00000278412 RIPK4P57078 832 aa15.41■□□□□ 0.06
SSRP1-201ENST00000278412 TSR2Q969E8 191 aaKnown RBP15.41■□□□□ 0.06
SSRP1-201ENST00000278412 LRRC59Q96AG4 307 aaKnown RBP15.41■□□□□ 0.06
SSRP1-201ENST00000278412 EYA1Q99502 592 aa15.41■□□□□ 0.06
SSRP1-201ENST00000278412 MAPK8IP3Q9UPT6 1336 aa15.4■□□□□ 0.06
SSRP1-201ENST00000278412 DCCP43146 1447 aa15.4■□□□□ 0.06
SSRP1-201ENST00000278412 SBNO1A3KN83 1393 aa15.4■□□□□ 0.06
SSRP1-201ENST00000278412 PHF23Q9BUL5 403 aaPredicted RBP15.4■□□□□ 0.06
SSRP1-201ENST00000278412 FLT4P35916 1363 aa15.4■□□□□ 0.06
SSRP1-201ENST00000278412 MED1Q15648 1581 aaPredicted RBP15.39■□□□□ 0.05
SSRP1-201ENST00000278412 FCHSD2O94868 740 aa15.39■□□□□ 0.05
SSRP1-201ENST00000278412 RCAN3Q9UKA8 241 aa15.39■□□□□ 0.05
SSRP1-201ENST00000278412 CHRNA2Q15822 529 aa15.39■□□□□ 0.05
SSRP1-201ENST00000278412 PXDNQ92626 1479 aa15.38■□□□□ 0.05
SSRP1-201ENST00000278412 NCOA3Q9Y6Q9 1424 aa15.37■□□□□ 0.05
SSRP1-201ENST00000278412 RGPD2P0DJD1 1756 aa15.37■□□□□ 0.05
SSRP1-201ENST00000278412 PDE3BQ13370 1112 aa15.37■□□□□ 0.05
SSRP1-201ENST00000278412 KIF1AQ12756 1690 aa15.37■□□□□ 0.05
SSRP1-201ENST00000278412 ALS2Q96Q42 1657 aa15.37■□□□□ 0.05
SSRP1-201ENST00000278412 TRMT2AQ8IZ69 625 aaKnown RBP15.36■□□□□ 0.05
SSRP1-201ENST00000278412 NEFLP07196 543 aa15.36■□□□□ 0.05
SSRP1-201ENST00000278412 NBPF6Q5VWK0 638 aa15.36■□□□□ 0.05
SSRP1-201ENST00000278412 NBPF4Q96M43 638 aa15.36■□□□□ 0.05
SSRP1-201ENST00000278412 NPHP3Q7Z494 1330 aa15.36■□□□□ 0.05
SSRP1-201ENST00000278412 RGPD1P0DJD0 1748 aa15.36■□□□□ 0.05
SSRP1-201ENST00000278412 C20orf194Q5TEA3 1177 aa15.35■□□□□ 0.05
SSRP1-201ENST00000278412 RGPD5Q99666 1765 aa15.35■□□□□ 0.05
SSRP1-201ENST00000278412 USP54Q70EL1 1684 aa15.35■□□□□ 0.05
SSRP1-201ENST00000278412 DLG5Q8TDM6 1919 aa15.35■□□□□ 0.05
SSRP1-201ENST00000278412 BCAR3O75815 825 aa15.35■□□□□ 0.05
SSRP1-201ENST00000278412 ARHGEF25Q86VW2 580 aa15.35■□□□□ 0.05
SSRP1-201ENST00000278412 BCL2L13Q9BXK5 485 aa15.35■□□□□ 0.05
SSRP1-201ENST00000278412 LAS1LQ9Y4W2 734 aaKnown RBP15.35■□□□□ 0.05
SSRP1-201ENST00000278412 USP19O94966 1318 aa15.35■□□□□ 0.05
SSRP1-201ENST00000278412 SPATA31A3Q5VYP0 1347 aa15.34■□□□□ 0.05
SSRP1-201ENST00000278412 LTBP4Q8N2S1 1624 aa15.33■□□□□ 0.05
SSRP1-201ENST00000278412 MCM10Q7L590 875 aa15.33■□□□□ 0.04
SSRP1-201ENST00000278412 IP6K1Q92551 441 aa15.33■□□□□ 0.04
SSRP1-201ENST00000278412 NFE2L2Q16236 605 aa15.33■□□□□ 0.04
SSRP1-201ENST00000278412 TNS3Q68CZ2 1445 aa15.32■□□□□ 0.04
SSRP1-201ENST00000278412 SLIT3O75094 1523 aa15.32■□□□□ 0.04
SSRP1-201ENST00000278412 MTHFSDQ2M296 383 aaKnown RBP15.32■□□□□ 0.04
SSRP1-201ENST00000278412 IGSF1Q8N6C5 1336 aa15.32■□□□□ 0.04
SSRP1-201ENST00000278412 E9PSI1 815 aa15.32■□□□□ 0.04
SSRP1-201ENST00000278412 RRP1P56182 461 aaKnown RBP15.32■□□□□ 0.04
SSRP1-201ENST00000278412 RNF123Q5XPI4 1314 aa15.32■□□□□ 0.04
SSRP1-201ENST00000278412 TNNQ9UQP3 1299 aa15.31■□□□□ 0.04
SSRP1-201ENST00000278412 FANCIQ9NVI1 1328 aa15.31■□□□□ 0.04
SSRP1-201ENST00000278412 KCNH5Q8NCM2 988 aa15.3■□□□□ 0.04
SSRP1-201ENST00000278412 CCDC27Q2M243 656 aa15.3■□□□□ 0.04
SSRP1-201ENST00000278412 MIS18AQ9NYP9 233 aa15.3■□□□□ 0.04
SSRP1-201ENST00000278412 KIAA0232Q92628 1395 aa15.3■□□□□ 0.04
SSRP1-201ENST00000278412 SOS2Q07890 1332 aaPredicted RBP15.3■□□□□ 0.04
SSRP1-201ENST00000278412 PIP4K2BP78356 416 aa15.3■□□□□ 0.04
SSRP1-201ENST00000278412 ANKRD24Q8TF21 1146 aa15.3■□□□□ 0.04
SSRP1-201ENST00000278412 EXOSC9Q06265 439 aaKnown RBP15.29■□□□□ 0.04
SSRP1-201ENST00000278412 KRT24Q2M2I5 525 aa15.29■□□□□ 0.04
SSRP1-201ENST00000278412 B4GALNT3Q6L9W6 998 aa15.29■□□□□ 0.04
SSRP1-201ENST00000278412 ELL2O00472 640 aaPredicted RBP15.28■□□□□ 0.04
SSRP1-201ENST00000278412 WDR63Q8IWG1 891 aa15.28■□□□□ 0.04
SSRP1-201ENST00000278412 ARHGEF10O15013 1369 aa15.28■□□□□ 0.04
SSRP1-201ENST00000278412 TCERG1O14776 1098 aaKnown RBP15.28■□□□□ 0.04
SSRP1-201ENST00000278412 EXOC6Q8TAG9 804 aa15.28■□□□□ 0.04
SSRP1-201ENST00000278412 PHRF1Q9P1Y6 1649 aaKnown RBP15.28■□□□□ 0.04
SSRP1-201ENST00000278412 KDRP35968 1356 aa15.27■□□□□ 0.04
SSRP1-201ENST00000278412 NEFMP07197 916 aa15.26■□□□□ 0.03
SSRP1-201ENST00000278412 TSPYL6Q8N831 410 aa15.26■□□□□ 0.03
SSRP1-201ENST00000278412 ROBO1Q9Y6N7 1651 aa15.26■□□□□ 0.03
SSRP1-201ENST00000278412 CRYBG1Q9Y4K1 1723 aa15.26■□□□□ 0.03
SSRP1-201ENST00000278412 RTL1A6NKG5 1358 aa15.25■□□□□ 0.03
SSRP1-201ENST00000278412 ANP32EQ9BTT0 268 aa15.24■□□□□ 0.03
SSRP1-201ENST00000278412 MBIPQ9NS73 344 aa15.24■□□□□ 0.03
SSRP1-201ENST00000278412 ERBB3P21860 1342 aa15.24■□□□□ 0.03
SSRP1-201ENST00000278412 PNNQ9H307 717 aaKnown RBP15.24■□□□□ 0.03
SSRP1-201ENST00000278412 NLRP2Q9NX02 1062 aa15.23■□□□□ 0.03
SSRP1-201ENST00000278412 FRAT1Q92837 279 aaPredicted RBP15.23■□□□□ 0.03
SSRP1-201ENST00000278412 CRBNQ96SW2 442 aa15.23■□□□□ 0.03
SSRP1-201ENST00000278412 COL18A1P39060 1754 aa15.22■□□□□ 0.03
SSRP1-201ENST00000278412 HAP1P54257 671 aaPredicted RBP15.22■□□□□ 0.03
SSRP1-201ENST00000278412 NGEFQ8N5V2 710 aa15.22■□□□□ 0.03
SSRP1-201ENST00000278412 NHSL1Q5SYE7 1610 aa15.22■□□□□ 0.03
SSRP1-201ENST00000278412 RARSP54136 660 aaKnown RBP15.22■□□□□ 0.03
SSRP1-201ENST00000278412 KIF24Q5T7B8 1368 aa15.22■□□□□ 0.03
SSRP1-201ENST00000278412 AEBP2Q6ZN18 517 aaPredicted RBP15.21■□□□□ 0.03
SSRP1-201ENST00000278412 PRDM11Q9NQV5 511 aa15.21■□□□□ 0.03
SSRP1-201ENST00000278412 C8orf58Q8NAV2 365 aa15.21■□□□□ 0.03
SSRP1-201ENST00000278412 MYH16Q9H6N6 1097 aa15.21■□□□□ 0.03
SSRP1-201ENST00000278412 CSB-PGBD3P0DP91 1061 aa15.21■□□□□ 0.02
SSRP1-201ENST00000278412 IL17REQ8NFR9 667 aa15.21■□□□□ 0.02
SSRP1-201ENST00000278412 LGR6Q9HBX8 967 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms