RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 EXOSC9Q06265 439 aaKnown RBP21.51■■□□□ 1.03
CCDC40-201ENST00000269318 AEBP2Q6ZN18 517 aaPredicted RBP21.51■■□□□ 1.03
CCDC40-201ENST00000269318 SOX12O15370 315 aa21.5■■□□□ 1.03
CCDC40-201ENST00000269318 AEBP1Q8IUX7 1158 aa21.5■■□□□ 1.03
CCDC40-201ENST00000269318 KDM2BQ8NHM5 1336 aa21.49■■□□□ 1.03
CCDC40-201ENST00000269318 DLG5Q8TDM6 1919 aa21.49■■□□□ 1.03
CCDC40-201ENST00000269318 SULT6B1Q6IMI4 303 aa21.48■■□□□ 1.03
CCDC40-201ENST00000269318 ARHGEF10O15013 1369 aa21.47■■□□□ 1.03
CCDC40-201ENST00000269318 KIF24Q5T7B8 1368 aa21.47■■□□□ 1.03
CCDC40-201ENST00000269318 CANXP27824 592 aaKnown RBP21.47■■□□□ 1.03
CCDC40-201ENST00000269318 ABTB2Q8N961 1025 aa21.47■■□□□ 1.03
CCDC40-201ENST00000269318 BCL2L13Q9BXK5 485 aa21.47■■□□□ 1.03
CCDC40-201ENST00000269318 CALD1Q05682 793 aaKnown RBP21.47■■□□□ 1.03
CCDC40-201ENST00000269318 FRAT1Q92837 279 aaPredicted RBP21.47■■□□□ 1.03
CCDC40-201ENST00000269318 LMOD3Q0VAK6 560 aa21.46■■□□□ 1.03
CCDC40-201ENST00000269318 ESCO1Q5FWF5 840 aa21.46■■□□□ 1.03
CCDC40-201ENST00000269318 PANK1Q8TE04 598 aa21.46■■□□□ 1.03
CCDC40-201ENST00000269318 THUMPD2Q9BTF0 503 aaKnown RBP21.45■■□□□ 1.02
CCDC40-201ENST00000269318 PAK3O75914 559 aaPredicted RBP21.45■■□□□ 1.02
CCDC40-201ENST00000269318 ZNF853P0CG23 659 aa21.45■■□□□ 1.02
CCDC40-201ENST00000269318 NUTM2GQ5VZR2 741 aa21.45■■□□□ 1.02
CCDC40-201ENST00000269318 C14orf37Q86TY3 774 aa21.45■■□□□ 1.02
CCDC40-201ENST00000269318 IFT57Q9NWB7 429 aa21.44■■□□□ 1.02
CCDC40-201ENST00000269318 AMPHP49418 695 aa21.43■■□□□ 1.02
CCDC40-201ENST00000269318 PROSER2Q86WR7 435 aaPredicted RBP21.43■■□□□ 1.02
CCDC40-201ENST00000269318 KDRP35968 1356 aa21.43■■□□□ 1.02
CCDC40-201ENST00000269318 COG6Q9Y2V7 657 aa21.43■■□□□ 1.02
CCDC40-201ENST00000269318 RLBP1P12271 317 aa21.42■■□□□ 1.02
CCDC40-201ENST00000269318 CENPQQ7L2Z9 268 aaPredicted RBP21.42■■□□□ 1.02
CCDC40-201ENST00000269318 SSH1Q8WYL5 1049 aa21.42■■□□□ 1.02
CCDC40-201ENST00000269318 TNNQ9UQP3 1299 aa21.42■■□□□ 1.02
CCDC40-201ENST00000269318 GNAI1P63096 354 aa21.41■■□□□ 1.02
CCDC40-201ENST00000269318 IGSF1Q8N6C5 1336 aa21.41■■□□□ 1.02
CCDC40-201ENST00000269318 HOXC9P31274 260 aa21.41■■□□□ 1.02
CCDC40-201ENST00000269318 PSME1Q06323 249 aa21.41■■□□□ 1.02
CCDC40-201ENST00000269318 ORAI2Q96SN7 254 aa21.41■■□□□ 1.02
CCDC40-201ENST00000269318 NFAT5O94916 1531 aa21.41■■□□□ 1.02
CCDC40-201ENST00000269318 FAM83GA6ND36 823 aa21.4■■□□□ 1.02
CCDC40-201ENST00000269318 SMC4Q9NTJ3 1288 aa21.4■■□□□ 1.02
CCDC40-201ENST00000269318 ZKSCAN2Q63HK3 967 aa21.39■■□□□ 1.02
CCDC40-201ENST00000269318 RTL1A6NKG5 1358 aa21.39■■□□□ 1.01
CCDC40-201ENST00000269318 CFAP44Q96MT7 982 aa21.39■■□□□ 1.01
CCDC40-201ENST00000269318 EYA1Q99502 592 aa21.39■■□□□ 1.01
CCDC40-201ENST00000269318 C19orf44Q9H6X5 657 aa21.39■■□□□ 1.01
CCDC40-201ENST00000269318 LAS1LQ9Y4W2 734 aaKnown RBP21.39■■□□□ 1.01
CCDC40-201ENST00000269318 STRCP1A6NGW2 1772 aa21.39■■□□□ 1.01
CCDC40-201ENST00000269318 TCERG1O14776 1098 aaKnown RBP21.38■■□□□ 1.01
CCDC40-201ENST00000269318 CLUAP1Q96AJ1 413 aa21.38■■□□□ 1.01
CCDC40-201ENST00000269318 ZNF428Q96B54 188 aa21.38■■□□□ 1.01
CCDC40-201ENST00000269318 MBIPQ9NS73 344 aa21.38■■□□□ 1.01
CCDC40-201ENST00000269318 C1orf167Q5SNV9 1468 aa21.38■■□□□ 1.01
CCDC40-201ENST00000269318 AAMPQ13685 434 aa21.37■■□□□ 1.01
CCDC40-201ENST00000269318 ALDH1L2Q3SY69 923 aa21.37■■□□□ 1.01
CCDC40-201ENST00000269318 DCTN1Q14203 1278 aa21.36■■□□□ 1.01
CCDC40-201ENST00000269318 KIF1AQ12756 1690 aa21.36■■□□□ 1.01
CCDC40-201ENST00000269318 LTN1O94822 1766 aa21.36■■□□□ 1.01
CCDC40-201ENST00000269318 FOXO3O43524 673 aa21.35■■□□□ 1.01
CCDC40-201ENST00000269318 BRPF1P55201 1214 aaPredicted RBP21.35■■□□□ 1.01
CCDC40-201ENST00000269318 NCOA3Q9Y6Q9 1424 aa21.35■■□□□ 1.01
CCDC40-201ENST00000269318 TRPM3Q9HCF6 1732 aaPredicted RBP21.35■■□□□ 1.01
CCDC40-201ENST00000269318 VAMP4O75379 141 aa21.34■■□□□ 1.01
CCDC40-201ENST00000269318 TRIM27P14373 513 aa21.34■■□□□ 1.01
CCDC40-201ENST00000269318 DZIP1LQ8IYY4 767 aaKnown RBP21.34■■□□□ 1.01
CCDC40-201ENST00000269318 TMEM94Q12767 1356 aa21.34■■□□□ 1.01
CCDC40-201ENST00000269318 PHRF1Q9P1Y6 1649 aaKnown RBP21.34■■□□□ 1.01
CCDC40-201ENST00000269318 MS4A1P11836 297 aa21.34■■□□□ 1.01
CCDC40-201ENST00000269318 KIF16BQ96L93 1317 aa21.33■■□□□ 1.01
CCDC40-201ENST00000269318 DCCP43146 1447 aa21.33■■□□□ 1.01
CCDC40-201ENST00000269318 HSPA2P54652 639 aa21.33■■□□□ 1.01
CCDC40-201ENST00000269318 MVPQ14764 893 aaKnown RBP21.33■■□□□ 1.01
CCDC40-201ENST00000269318 ATF7IPQ6VMQ6 1270 aa21.33■■□□□ 1.01
CCDC40-201ENST00000269318 NOB1Q9ULX3 412 aaKnown RBP21.33■■□□□ 1.01
CCDC40-201ENST00000269318 SLIT3O75094 1523 aa21.33■■□□□ 1
CCDC40-201ENST00000269318 MTHFSDQ2M296 383 aaKnown RBP21.32■■□□□ 1
CCDC40-201ENST00000269318 TSPYL6Q8N831 410 aa21.32■■□□□ 1
CCDC40-201ENST00000269318 MST1RQ04912 1400 aa21.32■■□□□ 1
CCDC40-201ENST00000269318 KCNH5Q8NCM2 988 aa21.32■■□□□ 1
CCDC40-201ENST00000269318 IP6K1Q92551 441 aa21.32■■□□□ 1
CCDC40-201ENST00000269318 IGHDP01880 384 aa21.31■■□□□ 1
CCDC40-201ENST00000269318 SKAP1Q86WV1 359 aa21.31■■□□□ 1
CCDC40-201ENST00000269318 MCM10Q7L590 875 aa21.3■■□□□ 1
CCDC40-201ENST00000269318 FTSJ3Q8IY81 847 aaKnown RBP21.3■■□□□ 1
CCDC40-201ENST00000269318 CRB1P82279 1406 aa21.3■■□□□ 1
CCDC40-201ENST00000269318 KDM4FA0A1W2PPD8 638 aa21.3■■□□□ 1
CCDC40-201ENST00000269318 XPCQ01831 940 aaPredicted RBP21.3■■□□□ 1
CCDC40-201ENST00000269318 CHL1O00533 1208 aa21.29■■□□□ 1
CCDC40-201ENST00000269318 C8orf58Q8NAV2 365 aa21.29■■□□□ 1
CCDC40-201ENST00000269318 LMTK3Q96Q04 1460 aa21.29■■□□□ 1
CCDC40-201ENST00000269318 IPO8O15397 1037 aaKnown RBP21.28■■□□□ 1
CCDC40-201ENST00000269318 TWISTNBQ3B726 338 aaPredicted RBP21.28■■□□□ 1
CCDC40-201ENST00000269318 USP19O94966 1318 aa21.28■■□□□ 1
CCDC40-201ENST00000269318 KRT28Q7Z3Y7 464 aa21.28■■□□□ 1
CCDC40-201ENST00000269318 MRPL50Q8N5N7 158 aaKnown RBP21.28■■□□□ 1
CCDC40-201ENST00000269318 GAS2L2Q8NHY3 880 aa21.28■■□□□ 1
CCDC40-201ENST00000269318 PCDHB15Q9Y5E8 787 aa21.27■■□□□ 1
CCDC40-201ENST00000269318 ATF3P18847 181 aa21.27■□□□□ 0.99
CCDC40-201ENST00000269318 GCP02774 474 aa21.26■□□□□ 0.99
CCDC40-201ENST00000269318 LTV1Q96GA3 475 aaPredicted RBP21.26■□□□□ 0.99
CCDC40-201ENST00000269318 ALS2Q96Q42 1657 aa21.25■□□□□ 0.99
CCDC40-201ENST00000269318 ELL2O00472 640 aaPredicted RBP21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms