RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 RRAGDQ9NQL2 400 aaPredicted RBP13.91□□□□□ -0.18
VPS33A-201ENST00000267199 G3BP1Q13283 466 aaKnown RBP eCLIP13.9□□□□□ -0.182e-6■■■■□ 22
VPS33A-201ENST00000267199 PDCL3Q9H2J4 239 aa13.9□□□□□ -0.18
VPS33A-201ENST00000267199 CCDC61Q9Y6R9 512 aa13.9□□□□□ -0.18
VPS33A-201ENST00000267199 MAPK8IP2Q13387 824 aaPredicted RBP13.9□□□□□ -0.18
VPS33A-201ENST00000267199 TNNQ9UQP3 1299 aa13.9□□□□□ -0.18
VPS33A-201ENST00000267199 EMILIN1Q9Y6C2 1016 aa13.9□□□□□ -0.18
VPS33A-201ENST00000267199 ABCC11Q96J66 1382 aa13.9□□□□□ -0.18
VPS33A-201ENST00000267199 HSP90AB4PQ58FF6 505 aa13.9□□□□□ -0.18
VPS33A-201ENST00000267199 KIF3AQ9Y496 699 aa13.9□□□□□ -0.18
VPS33A-201ENST00000267199 CARD14Q9BXL6 1004 aa13.9□□□□□ -0.19
VPS33A-201ENST00000267199 FANCAO15360 1455 aa13.89□□□□□ -0.19
VPS33A-201ENST00000267199 CBX1P83916 185 aa13.89□□□□□ -0.19
VPS33A-201ENST00000267199 ALDH1L2Q3SY69 923 aa13.89□□□□□ -0.19
VPS33A-201ENST00000267199 ZHX1Q9UKY1 873 aaPredicted RBP13.89□□□□□ -0.19
VPS33A-201ENST00000267199 ERC2O15083 957 aa13.89□□□□□ -0.19
VPS33A-201ENST00000267199 NME9Q86XW9 330 aa13.89□□□□□ -0.19
VPS33A-201ENST00000267199 NUDT16Q96DE0 195 aaKnown RBP13.89□□□□□ -0.19
VPS33A-201ENST00000267199 CWC22Q9HCG8 908 aaKnown RBP13.89□□□□□ -0.19
VPS33A-201ENST00000267199 AIMP1Q12904 312 aaKnown RBP13.88□□□□□ -0.19
VPS33A-201ENST00000267199 PLCH2O75038 1416 aa13.88□□□□□ -0.19
VPS33A-201ENST00000267199 DDX58O95786 925 aaKnown RBP13.88□□□□□ -0.19
VPS33A-201ENST00000267199 CD109Q6YHK3 1445 aa13.88□□□□□ -0.19
VPS33A-201ENST00000267199 ABTB2Q8N961 1025 aa13.88□□□□□ -0.19
VPS33A-201ENST00000267199 FBLN1P23142 703 aa13.88□□□□□ -0.19
VPS33A-201ENST00000267199 SLC26A8Q96RN1 970 aa13.88□□□□□ -0.19
VPS33A-201ENST00000267199 MIS18AQ9NYP9 233 aa13.88□□□□□ -0.19
VPS33A-201ENST00000267199 HDGFL1Q5TGJ6 251 aa13.87□□□□□ -0.19
VPS33A-201ENST00000267199 RPAP2Q8IXW5 612 aaPredicted RBP13.87□□□□□ -0.19
VPS33A-201ENST00000267199 CLASRPQ8N2M8 674 aaKnown RBP13.87□□□□□ -0.19
VPS33A-201ENST00000267199 DUOX2Q9NRD8 1548 aa13.87□□□□□ -0.19
VPS33A-201ENST00000267199 TRAPPC8Q9Y2L5 1435 aa13.87□□□□□ -0.19
VPS33A-201ENST00000267199 SHANK2Q9UPX8 1470 aa13.87□□□□□ -0.19
VPS33A-201ENST00000267199 RLBP1P12271 317 aa13.87□□□□□ -0.19
VPS33A-201ENST00000267199 CCT4P50991 539 aaKnown RBP13.87□□□□□ -0.19
VPS33A-201ENST00000267199 FBXO31Q5XUX0 539 aaPredicted RBP13.87□□□□□ -0.19
VPS33A-201ENST00000267199 MCM10Q7L590 875 aa13.87□□□□□ -0.19
VPS33A-201ENST00000267199 ABCA5Q8WWZ7 1642 aa13.87□□□□□ -0.19
VPS33A-201ENST00000267199 COL17A1Q9UMD9 1497 aaPredicted RBP13.87□□□□□ -0.19
VPS33A-201ENST00000267199 KDM5BQ9UGL1 1544 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 TTC5Q8N0Z6 440 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 KDM6BO15054 1643 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 MCM2P49736 904 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 RNF20Q5VTR2 975 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 MNS1Q8NEH6 495 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 LRRCC1Q9C099 1032 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 ADGRL2O95490 1459 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 FMNL2Q96PY5 1086 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 EXOC6BQ9Y2D4 811 aa13.86□□□□□ -0.19
VPS33A-201ENST00000267199 A2MP01023 1474 aa13.85□□□□□ -0.19
VPS33A-201ENST00000267199 PES1O00541 588 aaKnown RBP13.85□□□□□ -0.19
VPS33A-201ENST00000267199 TEX35Q5T0J7 233 aa13.85□□□□□ -0.19
VPS33A-201ENST00000267199 UPF3BQ9BZI7 483 aaKnown RBP13.85□□□□□ -0.19
VPS33A-201ENST00000267199 TOMM22Q9NS69 142 aa13.85□□□□□ -0.19
VPS33A-201ENST00000267199 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.85□□□□□ -0.19
VPS33A-201ENST00000267199 TPM3P06753 285 aa13.85□□□□□ -0.19
VPS33A-201ENST00000267199 CNTROBQ8N137 903 aa13.85□□□□□ -0.19
VPS33A-201ENST00000267199 SMARCA5O60264 1052 aaPredicted RBP13.85□□□□□ -0.19
VPS33A-201ENST00000267199 CCDC73Q6ZRK6 1079 aa13.85□□□□□ -0.19
VPS33A-201ENST00000267199 RBM27Q9P2N5 1060 aaKnown RBP13.85□□□□□ -0.19
VPS33A-201ENST00000267199 CEBPZQ03701 1054 aaKnown RBP13.84□□□□□ -0.19
VPS33A-201ENST00000267199 GCC2Q8IWJ2 1684 aa13.84□□□□□ -0.19
VPS33A-201ENST00000267199 IL1RAPL2Q9NP60 686 aa13.84□□□□□ -0.19
VPS33A-201ENST00000267199 RIC3Q7Z5B4 369 aa13.84□□□□□ -0.19
VPS33A-201ENST00000267199 GDPD2Q9HCC8 539 aa13.84□□□□□ -0.19
VPS33A-201ENST00000267199 PIK3C2GO75747 1445 aa13.84□□□□□ -0.19
VPS33A-201ENST00000267199 POLR3AO14802 1390 aaPredicted RBP13.84□□□□□ -0.19
VPS33A-201ENST00000267199 MAP4K4O95819 1239 aaPredicted RBP13.83□□□□□ -0.19
VPS33A-201ENST00000267199 KIF21AQ7Z4S6 1674 aa13.83□□□□□ -0.19
VPS33A-201ENST00000267199 PDCL2Q8N4E4 241 aa13.83□□□□□ -0.2
VPS33A-201ENST00000267199 SDF4Q9BRK5 362 aa13.83□□□□□ -0.2
VPS33A-201ENST00000267199 NSD2O96028 1365 aa13.83□□□□□ -0.2
VPS33A-201ENST00000267199 FYB1O15117 783 aa13.83□□□□□ -0.2
VPS33A-201ENST00000267199 BAG4O95429 457 aaKnown RBP13.83□□□□□ -0.2
VPS33A-201ENST00000267199 USP25Q9UHP3 1055 aa13.82□□□□□ -0.2
VPS33A-201ENST00000267199 WDR33Q9C0J8 1336 aaKnown RBP13.82□□□□□ -0.2
VPS33A-201ENST00000267199 CCDC112Q8NEF3 446 aa13.82□□□□□ -0.2
VPS33A-201ENST00000267199 DMRT2Q9Y5R5 561 aa13.82□□□□□ -0.2
VPS33A-201ENST00000267199 NOC3LQ8WTT2 800 aaKnown RBP13.81□□□□□ -0.2
VPS33A-201ENST00000267199 RAPGEF4Q8WZA2 1011 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 SRCIN1Q9C0H9 1055 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 LETM1O95202 739 aaPredicted RBP13.81□□□□□ -0.2
VPS33A-201ENST00000267199 GPS2Q13227 327 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 RASSF8Q8NHQ8 419 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 CCDC34Q96HJ3 373 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 FAM83GA6ND36 823 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 BMP2KLQ5H9B9 411 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 FSD1Q9BTV5 496 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 ARGLU1Q9NWB6 273 aaPredicted RBP13.81□□□□□ -0.2
VPS33A-201ENST00000267199 F6X3S4 739 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 CCDC192P0DO97 292 aa13.81□□□□□ -0.2
VPS33A-201ENST00000267199 HDAC1Q13547 482 aaPredicted RBP13.81□□□□□ -0.2
VPS33A-201ENST00000267199 RBM42Q9BTD8 480 aaKnown RBP13.81□□□□□ -0.2
VPS33A-201ENST00000267199 CCDC66A2RUB6 948 aa13.8□□□□□ -0.2
VPS33A-201ENST00000267199 TBC1D9Q6ZT07 1266 aa13.8□□□□□ -0.2
VPS33A-201ENST00000267199 NLRP2Q9NX02 1062 aa13.8□□□□□ -0.2
VPS33A-201ENST00000267199 ERICH4A6NGS2 130 aa13.8□□□□□ -0.2
VPS33A-201ENST00000267199 EIF2AK4Q9P2K8 1649 aaKnown RBP13.8□□□□□ -0.2
VPS33A-201ENST00000267199 CPLX1O14810 134 aa13.79□□□□□ -0.2
VPS33A-201ENST00000267199 SRGAP3O43295 1099 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms