RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TTC39AQ5SRH9 613 aa15.27■□□□□ 0.03
USP40-201ENST00000251722 RDXP35241 583 aaKnown RBP15.26■□□□□ 0.03
USP40-201ENST00000251722 SLC26A8Q96RN1 970 aa15.26■□□□□ 0.03
USP40-201ENST00000251722 CREBRFQ8IUR6 639 aa15.26■□□□□ 0.03
USP40-201ENST00000251722 NUTM2BA6NNL0 878 aaPredicted RBP15.26■□□□□ 0.03
USP40-201ENST00000251722 NUTM2EB1AL46 878 aaPredicted RBP15.26■□□□□ 0.03
USP40-201ENST00000251722 PES1O00541 588 aaKnown RBP15.26■□□□□ 0.03
USP40-201ENST00000251722 PDCP20941 246 aa15.26■□□□□ 0.03
USP40-201ENST00000251722 HSP90AB3PQ58FF7 597 aa15.26■□□□□ 0.03
USP40-201ENST00000251722 NUTM2AQ8IVF1 878 aaPredicted RBP15.26■□□□□ 0.03
USP40-201ENST00000251722 DNAJC2Q99543 621 aaKnown RBP15.26■□□□□ 0.03
USP40-201ENST00000251722 USP8P40818 1118 aa15.25■□□□□ 0.03
USP40-201ENST00000251722 CCDC73Q6ZRK6 1079 aa15.25■□□□□ 0.03
USP40-201ENST00000251722 SURF6O75683 361 aaKnown RBP15.25■□□□□ 0.03
USP40-201ENST00000251722 ADAMTS8Q9UP79 889 aa15.25■□□□□ 0.03
USP40-201ENST00000251722 CHMP5Q9NZZ3 219 aa15.25■□□□□ 0.03
USP40-201ENST00000251722 WWC2Q6AWC2 1192 aa15.24■□□□□ 0.03
USP40-201ENST00000251722 CLGNO14967 610 aa15.24■□□□□ 0.03
USP40-201ENST00000251722 AEBP1Q8IUX7 1158 aa15.24■□□□□ 0.03
USP40-201ENST00000251722 DDX49Q9Y6V7 483 aaKnown RBP15.24■□□□□ 0.03
USP40-201ENST00000251722 ANKRD1Q15327 319 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 GNAT3A8MTJ3 354 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 CCDC57Q2TAC2 916 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 STK11IPQ8N1F8 1099 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 SLC12A5Q9H2X9 1139 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 CADPS2Q86UW7 1296 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 CCAR1Q8IX12 1150 aaKnown RBP15.23■□□□□ 0.03
USP40-201ENST00000251722 MPHOSPH8Q99549 860 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 TEX13AQ9BXU3 409 aaPredicted RBP15.23■□□□□ 0.03
USP40-201ENST00000251722 NAIPQ13075 1403 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 PIP4K2AP48426 406 aaPredicted RBP15.23■□□□□ 0.03
USP40-201ENST00000251722 PHF8Q9UPP1 1060 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 ABCC5O15440 1437 aa15.23■□□□□ 0.03
USP40-201ENST00000251722 TNRQ92752 1358 aa15.22■□□□□ 0.03
USP40-201ENST00000251722 TTC21BQ7Z4L5 1316 aa15.22■□□□□ 0.03
USP40-201ENST00000251722 NEFHP12036 1026 aa15.22■□□□□ 0.03
USP40-201ENST00000251722 DDX54Q8TDD1 881 aaKnown RBP15.22■□□□□ 0.03
USP40-201ENST00000251722 PRM3Q9NNZ6 103 aa15.22■□□□□ 0.03
USP40-201ENST00000251722 SSR1P43307 286 aaKnown RBP15.22■□□□□ 0.03
USP40-201ENST00000251722 BTBD11A6QL63 1104 aa15.21■□□□□ 0.03
USP40-201ENST00000251722 PLIN1O60240 522 aa15.21■□□□□ 0.03
USP40-201ENST00000251722 NFE2L2Q16236 605 aa15.21■□□□□ 0.03
USP40-201ENST00000251722 NBPF1Q3BBV0 1214 aa15.21■□□□□ 0.03
USP40-201ENST00000251722 NAT10Q9H0A0 1025 aaKnown RBP15.21■□□□□ 0.03
USP40-201ENST00000251722 DHX8Q14562 1220 aaKnown RBP15.21■□□□□ 0.03
USP40-201ENST00000251722 CALCOCO1Q9P1Z2 691 aa15.21■□□□□ 0.03
USP40-201ENST00000251722 TXLNAP40222 546 aa15.21■□□□□ 0.03
USP40-201ENST00000251722 ITSN2Q9NZM3 1697 aa15.21■□□□□ 0.03
USP40-201ENST00000251722 BICD2Q8TD16 824 aa15.21■□□□□ 0.03
USP40-201ENST00000251722 IGHMBP2P38935 993 aaKnown RBP15.21■□□□□ 0.02
USP40-201ENST00000251722 CTNNA3Q9UI47 895 aa15.21■□□□□ 0.02
USP40-201ENST00000251722 LETM1O95202 739 aaPredicted RBP15.2■□□□□ 0.02
USP40-201ENST00000251722 ZNF287Q9HBT7 754 aa15.2■□□□□ 0.02
USP40-201ENST00000251722 EXOSC9Q06265 439 aaKnown RBP15.2■□□□□ 0.02
USP40-201ENST00000251722 IKQ13123 557 aaPredicted RBP15.2■□□□□ 0.02
USP40-201ENST00000251722 ARGLU1Q9NWB6 273 aaPredicted RBP15.2■□□□□ 0.02
USP40-201ENST00000251722 SLC4A2P04920 1241 aa15.19■□□□□ 0.02
USP40-201ENST00000251722 PCMTD1Q96MG8 357 aaPredicted RBP15.19■□□□□ 0.02
USP40-201ENST00000251722 TMOD3Q9NYL9 352 aa15.19■□□□□ 0.02
USP40-201ENST00000251722 NSD3Q9BZ95 1437 aa15.19■□□□□ 0.02
USP40-201ENST00000251722 TMOD2Q9NZR1 351 aa15.19■□□□□ 0.02
USP40-201ENST00000251722 WDHD1O75717 1129 aaPredicted RBP15.19■□□□□ 0.02
USP40-201ENST00000251722 PLCH2O75038 1416 aa15.19■□□□□ 0.02
USP40-201ENST00000251722 DUOX2Q9NRD8 1548 aa15.19■□□□□ 0.02
USP40-201ENST00000251722 AKAP2Q9Y2D5 859 aa15.19■□□□□ 0.02
USP40-201ENST00000251722 ZNF518AQ6AHZ1 1483 aa15.19■□□□□ 0.02
USP40-201ENST00000251722 PIP4K2BP78356 416 aa15.18■□□□□ 0.02
USP40-201ENST00000251722 FOXD4L1Q9NU39 408 aa15.18■□□□□ 0.02
USP40-201ENST00000251722 CCDC39Q9UFE4 941 aa15.18■□□□□ 0.02
USP40-201ENST00000251722 SASS6Q6UVJ0 657 aa15.18■□□□□ 0.02
USP40-201ENST00000251722 LRRCC1Q9C099 1032 aa15.18■□□□□ 0.02
USP40-201ENST00000251722 MSH6P52701 1360 aa15.18■□□□□ 0.02
USP40-201ENST00000251722 WASLO00401 505 aaPredicted RBP15.18■□□□□ 0.02
USP40-201ENST00000251722 JMYQ8N9B5 988 aa15.18■□□□□ 0.02
USP40-201ENST00000251722 ZNF396Q96N95 335 aaPredicted RBP15.18■□□□□ 0.02
USP40-201ENST00000251722 RAPGEF6Q8TEU7 1601 aa15.18■□□□□ 0.02
USP40-201ENST00000251722 OLFM4Q6UX06 510 aa15.18■□□□□ 0.02
USP40-201ENST00000251722 A0A087WZG4 1122 aa15.17■□□□□ 0.02
USP40-201ENST00000251722 RPAP2Q8IXW5 612 aaPredicted RBP15.17■□□□□ 0.02
USP40-201ENST00000251722 AMOTL2Q9Y2J4 779 aa15.17■□□□□ 0.02
USP40-201ENST00000251722 SCAF11Q99590 1463 aaKnown RBP15.17■□□□□ 0.02
USP40-201ENST00000251722 LNPKQ9C0E8 428 aa15.17■□□□□ 0.02
USP40-201ENST00000251722 CEP126Q9P2H0 1117 aa15.17■□□□□ 0.02
USP40-201ENST00000251722 RABEP1Q15276 862 aa15.17■□□□□ 0.02
USP40-201ENST00000251722 C22orf23Q9BZE7 217 aa15.17■□□□□ 0.02
USP40-201ENST00000251722 CDKL5O76039 1030 aa15.16■□□□□ 0.02
USP40-201ENST00000251722 CCDC173Q0VFZ6 552 aa15.16■□□□□ 0.02
USP40-201ENST00000251722 PDCL2Q8N4E4 241 aa15.16■□□□□ 0.02
USP40-201ENST00000251722 LARP1Q6PKG0 1096 aaKnown RBP15.16■□□□□ 0.02
USP40-201ENST00000251722 TRIM22Q8IYM9 498 aa15.16■□□□□ 0.02
USP40-201ENST00000251722 IFT57Q9NWB7 429 aa15.16■□□□□ 0.02
USP40-201ENST00000251722 ZPR1O75312 459 aa15.16■□□□□ 0.02
USP40-201ENST00000251722 KRT32Q14532 448 aa15.16■□□□□ 0.02
USP40-201ENST00000251722 CNKSR2Q8WXI2 1034 aa15.15■□□□□ 0.02
USP40-201ENST00000251722 KDM5BQ9UGL1 1544 aa15.15■□□□□ 0.02
USP40-201ENST00000251722 FYB1O15117 783 aa15.15■□□□□ 0.02
USP40-201ENST00000251722 SLF2Q8IX21 1173 aa15.15■□□□□ 0.02
USP40-201ENST00000251722 TTC21AQ8NDW8 1320 aa15.15■□□□□ 0.02
USP40-201ENST00000251722 VPS37CA5D8V6 355 aaPredicted RBP15.15■□□□□ 0.02
USP40-201ENST00000251722 WDR7Q9Y4E6 1490 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms