RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C ENT3P47160 408 aa12.67□□□□□ -0.38
SPT8YLR055C SGD1Q06132 899 aa12.67□□□□□ -0.38
SPT8YLR055C CPA2P03965 1118 aaKnown RBP12.66□□□□□ -0.38
SPT8YLR055C LCB1P25045 558 aaKnown RBP12.66□□□□□ -0.38
SPT8YLR055C LTV1P34078 463 aa12.66□□□□□ -0.38
SPT8YLR055C MNR2P35724 969 aa12.66□□□□□ -0.38
SPT8YLR055C SLI15P38283 698 aa12.66□□□□□ -0.38
SPT8YLR055C GSM1P42950 618 aa12.66□□□□□ -0.38
SPT8YLR055C ALO1P54783 526 aaKnown RBP12.66□□□□□ -0.38
SPT8YLR055C KTR3P38130 404 aaPredicted RBP12.65□□□□□ -0.38
SPT8YLR055C GAS5Q08193 484 aa12.65□□□□□ -0.38
SPT8YLR055C MSM1P22438 575 aa12.64□□□□□ -0.39
SPT8YLR055C KTR1P27810 393 aaKnown RBP12.64□□□□□ -0.39
SPT8YLR055C GLO3P38682 493 aaKnown RBP12.64□□□□□ -0.39
SPT8YLR055C YGR130CP53278 816 aa12.64□□□□□ -0.39
SPT8YLR055C TOS4Q06266 489 aa12.64□□□□□ -0.39
SPT8YLR055C DDP1Q99321 188 aaKnown RBP12.64□□□□□ -0.39
SPT8YLR055C RDS1P25611 832 aa12.63□□□□□ -0.39
SPT8YLR055C CEP3P40969 608 aa12.63□□□□□ -0.39
SPT8YLR055C ARP5P53946 755 aa12.63□□□□□ -0.39
SPT8YLR055C RRG1Q12167 365 aaPredicted RBP12.63□□□□□ -0.39
SPT8YLR055C HAL5P38970 855 aaKnown RBP12.62□□□□□ -0.39
SPT8YLR055C PRP42Q03776 544 aaKnown RBP12.62□□□□□ -0.39
SPT8YLR055C ELG1Q12050 791 aa12.62□□□□□ -0.39
SPT8YLR055C PIF1P07271 859 aa12.62□□□□□ -0.39
SPT8YLR055C RPT3P33298 428 aaKnown RBP12.62□□□□□ -0.39
SPT8YLR055C STM1P39015 273 aaKnown RBP12.62□□□□□ -0.39
SPT8YLR055C YIR042CP40586 236 aa12.62□□□□□ -0.39
SPT8YLR055C JJJ2P46997 583 aa12.62□□□□□ -0.39
SPT8YLR055C PSF3Q12146 194 aa12.62□□□□□ -0.39
SPT8YLR055C YPL150WQ12152 901 aa12.62□□□□□ -0.39
SPT8YLR055C AFG2P32794 780 aa12.61□□□□□ -0.39
SPT8YLR055C RAD26P40352 1085 aa12.61□□□□□ -0.39
SPT8YLR055C VID28P40547 921 aa12.61□□□□□ -0.39
SPT8YLR055C CIN4P39110 191 aa12.6□□□□□ -0.39
SPT8YLR055C PIB2P53191 635 aa12.6□□□□□ -0.39
SPT8YLR055C INM2Q05533 292 aa12.6□□□□□ -0.39
SPT8YLR055C PSK2Q08217 1101 aa12.6□□□□□ -0.39
SPT8YLR055C GPA1P08539 472 aa12.59□□□□□ -0.39
SPT8YLR055C WRS1Q12109 432 aaKnown RBP12.59□□□□□ -0.39
SPT8YLR055C MAL33P38157 468 aa12.58□□□□□ -0.4
SPT8YLR055C YER130CP39959 443 aa12.58□□□□□ -0.4
SPT8YLR055C YFH7P43591 353 aa12.58□□□□□ -0.4
SPT8YLR055C THS1P04801 734 aaKnown RBP12.58□□□□□ -0.4
SPT8YLR055C ARG82P07250 355 aa12.58□□□□□ -0.4
SPT8YLR055C GAP1P19145 602 aaPredicted RBP12.58□□□□□ -0.4
SPT8YLR055C RRM3P38766 723 aa12.58□□□□□ -0.4
SPT8YLR055C TRM44Q02648 567 aaKnown RBP12.58□□□□□ -0.4
SPT8YLR055C YHL017WP38745 532 aa12.57□□□□□ -0.4
SPT8YLR055C CIC1P38779 376 aaKnown RBP12.57□□□□□ -0.4
SPT8YLR055C VMS1Q04311 632 aaKnown RBP12.57□□□□□ -0.4
SPT8YLR055C CRF1Q04930 467 aa12.57□□□□□ -0.4
SPT8YLR055C PGA3Q12746 312 aaKnown RBP12.57□□□□□ -0.4
SPT8YLR055C SMC3P47037 1230 aa12.56□□□□□ -0.4
SPT8YLR055C SEN54Q02825 467 aaPredicted RBP12.56□□□□□ -0.4
SPT8YLR055C FLO11P08640 1367 aa12.56□□□□□ -0.4
SPT8YLR055C RPS7AP26786 190 aaKnown RBP12.55□□□□□ -0.4
SPT8YLR055C PTK1P36002 662 aaPredicted RBP12.55□□□□□ -0.4
SPT8YLR055C EPS1P40557 701 aa12.55□□□□□ -0.4
SPT8YLR055C GLC3P32775 704 aa12.55□□□□□ -0.4
SPT8YLR055C FET4P40988 552 aa12.55□□□□□ -0.4
SPT8YLR055C VPS4P52917 437 aa12.55□□□□□ -0.4
SPT8YLR055C VPS60Q03390 229 aa12.55□□□□□ -0.4
SPT8YLR055C RTG2P32608 588 aaKnown RBP12.54□□□□□ -0.4
SPT8YLR055C STV1P37296 890 aa12.54□□□□□ -0.4
SPT8YLR055C RFC5P38251 354 aa12.54□□□□□ -0.4
SPT8YLR055C FYV10P40492 516 aa12.54□□□□□ -0.4
SPT8YLR055C ACK1Q07622 623 aaPredicted RBP12.54□□□□□ -0.4
SPT8YLR055C YLR278CQ05854 1341 aa12.54□□□□□ -0.4
SPT8YLR055C MDL2P33311 773 aa12.53□□□□□ -0.4
SPT8YLR055C JSN1P47135 1091 aaKnown RBP RIP-Chip data12.53□□□□□ -0.4not detected
SPT8YLR055C YPT11P48559 417 aa12.53□□□□□ -0.4
SPT8YLR055C YKE2P52553 114 aa12.53□□□□□ -0.4
SPT8YLR055C AIM7Q12156 149 aa12.53□□□□□ -0.4
SPT8YLR055C YMR147WP40218 223 aaKnown RBP12.53□□□□□ -0.4
SPT8YLR055C MATALPHA2P0CY08 210 aa12.52□□□□□ -0.41
SPT8YLR055C HMLALPHA2P0CY09 210 aa12.52□□□□□ -0.41
SPT8YLR055C PUS6P53294 404 aa12.52□□□□□ -0.41
SPT8YLR055C PUS5Q06244 254 aa12.52□□□□□ -0.41
SPT8YLR055C GRX7P38068 203 aa12.51□□□□□ -0.41
SPT8YLR055C BUD6P41697 788 aa12.51□□□□□ -0.41
SPT8YLR055C CYB2P00175 591 aa12.51□□□□□ -0.41
SPT8YLR055C HPR1P17629 752 aaKnown RBP12.51□□□□□ -0.41
SPT8YLR055C GSY2P27472 705 aa12.51□□□□□ -0.41
SPT8YLR055C FBP26P32604 452 aa12.51□□□□□ -0.41
SPT8YLR055C BOI1P38041 980 aaKnown RBP12.51□□□□□ -0.41
SPT8YLR055C YGR117CP53270 476 aa12.51□□□□□ -0.41
SPT8YLR055C WAR1Q03631 944 aa12.51□□□□□ -0.41
SPT8YLR055C TFC8Q12308 588 aa12.51□□□□□ -0.41
SPT8YLR055C SNF3P10870 884 aa12.5□□□□□ -0.41
SPT8YLR055C SPB4P25808 606 aaPredicted RBP12.5□□□□□ -0.41
SPT8YLR055C SRP40P32583 406 aaPredicted RBP12.5□□□□□ -0.41
SPT8YLR055C UTP13Q05946 817 aaKnown RBP12.5□□□□□ -0.41
SPT8YLR055C NOP14Q99207 810 aaKnown RBP12.5□□□□□ -0.41
SPT8YLR055C MRC1P25588 1096 aa12.49□□□□□ -0.41
SPT8YLR055C OSH3P38713 996 aaKnown RBP12.49□□□□□ -0.41
SPT8YLR055C NOC2P39744 710 aaKnown RBP12.49□□□□□ -0.41
SPT8YLR055C TFG2P41896 400 aaPredicted RBP12.49□□□□□ -0.41
SPT8YLR055C APL6P46682 809 aa12.49□□□□□ -0.41
SPT8YLR055C BBC1P47068 1157 aa12.49□□□□□ -0.41
Retrieved 100 of 5,963 RNA–protein pairs in 45.8 ms