RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 PPP2R1AP30153 589 aa25.72■■□□□ 1.71
CLN3-258ENST00000637184 NRKQ7Z2Y5 1582 aa25.71■■□□□ 1.71
CLN3-258ENST00000637184 MST1RQ04912 1400 aa25.7■■□□□ 1.7
CLN3-258ENST00000637184 ORAI2Q96SN7 254 aa25.69■■□□□ 1.7
CLN3-258ENST00000637184 TTC21BQ7Z4L5 1316 aa25.69■■□□□ 1.7
CLN3-258ENST00000637184 SSH2Q76I76 1423 aa25.68■■□□□ 1.7
CLN3-258ENST00000637184 NME9Q86XW9 330 aa25.67■■□□□ 1.7
CLN3-258ENST00000637184 TNNT2P45379 298 aaPredicted RBP25.67■■□□□ 1.7
CLN3-258ENST00000637184 KIF1AQ12756 1690 aa25.66■■□□□ 1.7
CLN3-258ENST00000637184 YTHDC1Q96MU7 727 aaKnown RBP25.66■■□□□ 1.7
CLN3-258ENST00000637184 TTC21AQ8NDW8 1320 aa25.66■■□□□ 1.7
CLN3-258ENST00000637184 PSME1Q06323 249 aa25.64■■□□□ 1.69
CLN3-258ENST00000637184 COG3Q96JB2 828 aa25.63■■□□□ 1.69
CLN3-258ENST00000637184 LTBP4Q8N2S1 1624 aa25.62■■□□□ 1.69
CLN3-258ENST00000637184 FOXO3O43524 673 aa25.61■■□□□ 1.69
CLN3-258ENST00000637184 FAM9BQ8IZU0 186 aa25.61■■□□□ 1.69
CLN3-258ENST00000637184 ZRANB1Q9UGI0 708 aa25.61■■□□□ 1.69
CLN3-258ENST00000637184 PNISRQ8TF01 805 aaKnown RBP25.59■■□□□ 1.69
CLN3-258ENST00000637184 PAK3O75914 559 aaPredicted RBP25.59■■□□□ 1.69
CLN3-258ENST00000637184 SLAIN2Q9P270 581 aa25.58■■□□□ 1.69
CLN3-258ENST00000637184 SCAF1Q9H7N4 1312 aaKnown RBP25.57■■□□□ 1.68
CLN3-258ENST00000637184 MTHFSP49914 203 aa25.56■■□□□ 1.68
CLN3-258ENST00000637184 PIK3C2AO00443 1686 aa25.56■■□□□ 1.68
CLN3-258ENST00000637184 OVOS2A0A0J9YW53 1432 aa25.55■■□□□ 1.68
CLN3-258ENST00000637184 OVOS2Q6IE36 1432 aa25.55■■□□□ 1.68
CLN3-258ENST00000637184 USP31Q70CQ4 1352 aa25.54■■□□□ 1.68
CLN3-258ENST00000637184 ABTB2Q8N961 1025 aa25.54■■□□□ 1.68
CLN3-258ENST00000637184 KRT28Q7Z3Y7 464 aa25.54■■□□□ 1.68
CLN3-258ENST00000637184 XPCQ01831 940 aaPredicted RBP25.53■■□□□ 1.68
CLN3-258ENST00000637184 NLRP6P59044 892 aa25.52■■□□□ 1.68
CLN3-258ENST00000637184 NPHP3Q7Z494 1330 aa25.52■■□□□ 1.68
CLN3-258ENST00000637184 MAP2P11137 1827 aaKnown RBP25.52■■□□□ 1.68
CLN3-258ENST00000637184 BRINP3Q76B58 766 aa25.51■■□□□ 1.67
CLN3-258ENST00000637184 CFAP53Q96M91 514 aa25.51■■□□□ 1.67
CLN3-258ENST00000637184 AATKQ6ZMQ8 1374 aa25.51■■□□□ 1.67
CLN3-258ENST00000637184 USP54Q70EL1 1684 aa25.49■■□□□ 1.67
CLN3-258ENST00000637184 TRPM3Q9HCF6 1732 aaPredicted RBP25.49■■□□□ 1.67
CLN3-258ENST00000637184 FBLN1P23142 703 aa25.48■■□□□ 1.67
CLN3-258ENST00000637184 NUTM2GQ5VZR2 741 aa25.48■■□□□ 1.67
CLN3-258ENST00000637184 POLKQ9UBT6 870 aa25.48■■□□□ 1.67
CLN3-258ENST00000637184 WDR43Q15061 677 aaKnown RBP eCLIP25.47■■□□□ 1.67
CLN3-258ENST00000637184 DDX17Q92841 729 aaKnown RBP25.47■■□□□ 1.67
CLN3-258ENST00000637184 MARF1Q9Y4F3 1742 aaKnown RBP25.45■■□□□ 1.67
CLN3-258ENST00000637184 PPM1GO15355 546 aaPredicted RBP25.44■■□□□ 1.66
CLN3-258ENST00000637184 LMOD2Q6P5Q4 547 aa25.44■■□□□ 1.66
CLN3-258ENST00000637184 SBNO1A3KN83 1393 aa25.43■■□□□ 1.66
CLN3-258ENST00000637184 SOX12O15370 315 aa25.43■■□□□ 1.66
CLN3-258ENST00000637184 RRS1Q15050 365 aaKnown RBP25.43■■□□□ 1.66
CLN3-258ENST00000637184 EMILIN1Q9Y6C2 1016 aa25.43■■□□□ 1.66
CLN3-258ENST00000637184 PXDNQ92626 1479 aa25.43■■□□□ 1.66
CLN3-258ENST00000637184 SMG6Q86US8 1419 aaKnown RBP25.43■■□□□ 1.66
CLN3-258ENST00000637184 HNRNPUQ00839 825 aaKnown RBP eCLIP25.42■■□□□ 1.66
CLN3-258ENST00000637184 PNPLA6Q8IY17 1366 aa25.41■■□□□ 1.66
CLN3-258ENST00000637184 ALS2Q96Q42 1657 aa25.41■■□□□ 1.66
CLN3-258ENST00000637184 ADAMTS8Q9UP79 889 aa25.41■■□□□ 1.66
CLN3-258ENST00000637184 SHPRHQ149N8 1683 aa25.4■■□□□ 1.66
CLN3-258ENST00000637184 INSRP06213 1382 aa25.39■■□□□ 1.66
CLN3-258ENST00000637184 CDK12Q9NYV4 1490 aaPredicted RBP25.39■■□□□ 1.65
CLN3-258ENST00000637184 COL3A1P02461 1466 aaPredicted RBP25.38■■□□□ 1.65
CLN3-258ENST00000637184 TNS3Q68CZ2 1445 aa25.38■■□□□ 1.65
CLN3-258ENST00000637184 KCNH5Q8NCM2 988 aa25.37■■□□□ 1.65
CLN3-258ENST00000637184 NUDCQ9Y266 331 aa25.37■■□□□ 1.65
CLN3-258ENST00000637184 NHSL1Q5SYE7 1610 aa25.37■■□□□ 1.65
CLN3-258ENST00000637184 SOS2Q07890 1332 aaPredicted RBP25.37■■□□□ 1.65
CLN3-258ENST00000637184 SPATA31A3Q5VYP0 1347 aa25.36■■□□□ 1.65
CLN3-258ENST00000637184 DIAPH1O60610 1272 aaKnown RBP25.36■■□□□ 1.65
CLN3-258ENST00000637184 CENPBP07199 599 aaPredicted RBP25.36■■□□□ 1.65
CLN3-258ENST00000637184 ROBO1Q9Y6N7 1651 aa25.35■■□□□ 1.65
CLN3-258ENST00000637184 MAP3K19Q56UN5 1328 aa25.35■■□□□ 1.65
CLN3-258ENST00000637184 USP19O94966 1318 aa25.34■■□□□ 1.65
CLN3-258ENST00000637184 ARHGEF10O15013 1369 aa25.34■■□□□ 1.65
CLN3-258ENST00000637184 BLMP54132 1417 aaPredicted RBP25.34■■□□□ 1.65
CLN3-258ENST00000637184 TOM1O60784 492 aa25.33■■□□□ 1.65
CLN3-258ENST00000637184 SLIT3O75094 1523 aa25.33■■□□□ 1.65
CLN3-258ENST00000637184 AMPHP49418 695 aa25.32■■□□□ 1.64
CLN3-258ENST00000637184 PEAK1Q9H792 1746 aa25.32■■□□□ 1.64
CLN3-258ENST00000637184 NFAT5O94916 1531 aa25.32■■□□□ 1.64
CLN3-258ENST00000637184 PLEKHG5O94827 1062 aa25.31■■□□□ 1.64
CLN3-258ENST00000637184 GCP02774 474 aa25.31■■□□□ 1.64
CLN3-258ENST00000637184 FLT4P35916 1363 aa25.3■■□□□ 1.64
CLN3-258ENST00000637184 KIF24Q5T7B8 1368 aa25.3■■□□□ 1.64
CLN3-258ENST00000637184 IQSEC2Q5JU85 1478 aa25.3■■□□□ 1.64
CLN3-258ENST00000637184 U2SURPO15042 1029 aaKnown RBP25.3■■□□□ 1.64
CLN3-258ENST00000637184 U2AF1L5P0DN76 240 aaPredicted RBP25.3■■□□□ 1.64
CLN3-258ENST00000637184 U2AF1Q01081 240 aaKnown RBP eCLIP25.3■■□□□ 1.64
CLN3-258ENST00000637184 LTN1O94822 1766 aa25.29■■□□□ 1.64
CLN3-258ENST00000637184 MED1Q15648 1581 aaPredicted RBP25.28■■□□□ 1.64
CLN3-258ENST00000637184 IL13P35225 146 aa25.27■■□□□ 1.64
CLN3-258ENST00000637184 HSP90AB2PQ58FF8 381 aa25.27■■□□□ 1.64
CLN3-258ENST00000637184 AHDC1Q5TGY3 1603 aaPredicted RBP25.26■■□□□ 1.63
CLN3-258ENST00000637184 ZBED9Q6R2W3 1325 aa25.26■■□□□ 1.63
CLN3-258ENST00000637184 RTL1A6NKG5 1358 aa25.25■■□□□ 1.63
CLN3-258ENST00000637184 PHRF1Q9P1Y6 1649 aaKnown RBP25.25■■□□□ 1.63
CLN3-258ENST00000637184 UBAP1LF5GYI3 381 aa25.25■■□□□ 1.63
CLN3-258ENST00000637184 HOXC9P31274 260 aa25.25■■□□□ 1.63
CLN3-258ENST00000637184 CCDC146Q8IYE0 955 aa25.25■■□□□ 1.63
CLN3-258ENST00000637184 CERKQ8TCT0 537 aa25.24■■□□□ 1.63
CLN3-258ENST00000637184 PIP4K2BP78356 416 aa25.23■■□□□ 1.63
CLN3-258ENST00000637184 EIF4A2Q14240 407 aaKnown RBP25.23■■□□□ 1.63
CLN3-258ENST00000637184 SENP3-EIF4A1A0A087X0R7 540 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms