RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 COL3A1P02461 1466 aaPredicted RBP19.05■□□□□ 0.64
CLN3-253ENST00000636977 SMC4Q9NTJ3 1288 aa19.05■□□□□ 0.64
CLN3-253ENST00000636977 CABP1Q9NZU7 370 aa19.05■□□□□ 0.64
CLN3-253ENST00000636977 SSH1Q8WYL5 1049 aa19.04■□□□□ 0.64
CLN3-253ENST00000636977 CDK19Q9BWU1 502 aa19.04■□□□□ 0.64
CLN3-253ENST00000636977 VIRMAQ69YN4 1812 aaKnown RBP19.04■□□□□ 0.64
CLN3-253ENST00000636977 TMEM131LA2VDJ0 1609 aa19.04■□□□□ 0.64
CLN3-253ENST00000636977 YTHDC2Q9H6S0 1430 aaKnown RBP19.04■□□□□ 0.64
CLN3-253ENST00000636977 ZKSCAN2Q63HK3 967 aa19.04■□□□□ 0.64
CLN3-253ENST00000636977 ZFYVE9O95405 1425 aa19.03■□□□□ 0.64
CLN3-253ENST00000636977 FTSJ3Q8IY81 847 aaKnown RBP19.03■□□□□ 0.64
CLN3-253ENST00000636977 TRIM27P14373 513 aa19.03■□□□□ 0.64
CLN3-253ENST00000636977 DZIP1LQ8IYY4 767 aaKnown RBP19.03■□□□□ 0.64
CLN3-253ENST00000636977 NLRP1Q9C000 1473 aa19.03■□□□□ 0.64
CLN3-253ENST00000636977 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.02■□□□□ 0.64
CLN3-253ENST00000636977 TERF2IPQ9NYB0 399 aa19.02■□□□□ 0.64
CLN3-253ENST00000636977 RIPK4P57078 832 aa19.02■□□□□ 0.64
CLN3-253ENST00000636977 WAPLQ7Z5K2 1190 aa19.02■□□□□ 0.64
CLN3-253ENST00000636977 PREX1Q8TCU6 1659 aa19.02■□□□□ 0.64
CLN3-253ENST00000636977 RWDD1Q9H446 243 aaPredicted RBP19.01■□□□□ 0.63
CLN3-253ENST00000636977 NOB1Q9ULX3 412 aaKnown RBP19■□□□□ 0.63
CLN3-253ENST00000636977 ATAD2Q6PL18 1390 aa19■□□□□ 0.63
CLN3-253ENST00000636977 GSE1Q14687 1217 aa18.99■□□□□ 0.63
CLN3-253ENST00000636977 STAG3Q9UJ98 1225 aa18.99■□□□□ 0.63
CLN3-253ENST00000636977 DIAPH1O60610 1272 aaKnown RBP18.99■□□□□ 0.63
CLN3-253ENST00000636977 ITPRIPQ8IWB1 547 aa18.99■□□□□ 0.63
CLN3-253ENST00000636977 CYB5RLQ6IPT4 315 aa18.98■□□□□ 0.63
CLN3-253ENST00000636977 BRPF3Q9ULD4 1205 aa18.98■□□□□ 0.63
CLN3-253ENST00000636977 NCBP3Q53F19 620 aaKnown RBP18.97■□□□□ 0.63
CLN3-253ENST00000636977 SLKQ9H2G2 1235 aaPredicted RBP18.97■□□□□ 0.63
CLN3-253ENST00000636977 ALKQ9UM73 1620 aa18.97■□□□□ 0.63
CLN3-253ENST00000636977 HDGFL2Q7Z4V5 671 aaPredicted RBP18.97■□□□□ 0.63
CLN3-253ENST00000636977 AAMPQ13685 434 aa18.96■□□□□ 0.63
CLN3-253ENST00000636977 PLEKHG5O94827 1062 aa18.96■□□□□ 0.63
CLN3-253ENST00000636977 TMEM57Q8N5G2 664 aa18.96■□□□□ 0.63
CLN3-253ENST00000636977 ARHGEF40Q8TER5 1519 aa18.95■□□□□ 0.62
CLN3-253ENST00000636977 ATF7IPQ6VMQ6 1270 aa18.95■□□□□ 0.62
CLN3-253ENST00000636977 THUMPD2Q9BTF0 503 aaKnown RBP18.95■□□□□ 0.62
CLN3-253ENST00000636977 HMOX1P09601 288 aa18.94■□□□□ 0.62
CLN3-253ENST00000636977 PRKAR2BP31323 418 aa18.94■□□□□ 0.62
CLN3-253ENST00000636977 MLECQ14165 292 aa18.93■□□□□ 0.62
CLN3-253ENST00000636977 PHACTR3Q96KR7 559 aa18.93■□□□□ 0.62
CLN3-253ENST00000636977 TBC1D32Q96NH3 1257 aa18.93■□□□□ 0.62
CLN3-253ENST00000636977 POLKQ9UBT6 870 aa18.93■□□□□ 0.62
CLN3-253ENST00000636977 ZRANB1Q9UGI0 708 aa18.93■□□□□ 0.62
CLN3-253ENST00000636977 PNPLA6Q8IY17 1366 aa18.93■□□□□ 0.62
CLN3-253ENST00000636977 CLTCQ00610 1675 aaKnown RBP18.92■□□□□ 0.62
CLN3-253ENST00000636977 CT47B1P0C2W7 299 aaPredicted RBP18.92■□□□□ 0.62
CLN3-253ENST00000636977 ANKRD26Q9UPS8 1709 aa18.92■□□□□ 0.62
CLN3-253ENST00000636977 NCKAP5LQ9HCH0 1330 aa18.92■□□□□ 0.62
CLN3-253ENST00000636977 FAM69CQ0P6D2 419 aa18.91■□□□□ 0.62
CLN3-253ENST00000636977 RSPH6AQ9H0K4 717 aa18.91■□□□□ 0.62
CLN3-253ENST00000636977 EMILIN1Q9Y6C2 1016 aa18.91■□□□□ 0.62
CLN3-253ENST00000636977 MED14O60244 1454 aa18.91■□□□□ 0.62
CLN3-253ENST00000636977 SPRYD3Q8NCJ5 442 aa18.9■□□□□ 0.62
CLN3-253ENST00000636977 DDX19BQ9UMR2 479 aa18.9■□□□□ 0.62
CLN3-253ENST00000636977 LRRC7Q96NW7 1537 aa18.9■□□□□ 0.62
CLN3-253ENST00000636977 IL16Q14005 1332 aa18.9■□□□□ 0.62
CLN3-253ENST00000636977 TBC1D2Q9BYX2 928 aa18.9■□□□□ 0.62
CLN3-253ENST00000636977 ZBTB40Q9NUA8 1239 aa18.89■□□□□ 0.61
CLN3-253ENST00000636977 NME9Q86XW9 330 aa18.88■□□□□ 0.61
CLN3-253ENST00000636977 ELL2O00472 640 aaPredicted RBP18.88■□□□□ 0.61
CLN3-253ENST00000636977 FCHSD2O94868 740 aa18.88■□□□□ 0.61
CLN3-253ENST00000636977 HDAC1Q13547 482 aaPredicted RBP18.88■□□□□ 0.61
CLN3-253ENST00000636977 BECN1Q14457 450 aa18.88■□□□□ 0.61
CLN3-253ENST00000636977 UPF2Q9HAU5 1272 aaKnown RBP18.88■□□□□ 0.61
CLN3-253ENST00000636977 MFAP1P55081 439 aaKnown RBP18.87■□□□□ 0.61
CLN3-253ENST00000636977 TSPYL6Q8N831 410 aa18.87■□□□□ 0.61
CLN3-253ENST00000636977 KIF20BQ96Q89 1820 aa18.87■□□□□ 0.61
CLN3-253ENST00000636977 ANTXR1Q9H6X2 564 aa18.87■□□□□ 0.61
CLN3-253ENST00000636977 A2ML1A8K2U0 1454 aa18.85■□□□□ 0.61
CLN3-253ENST00000636977 SMC5Q8IY18 1101 aa18.85■□□□□ 0.61
CLN3-253ENST00000636977 FAM135BQ49AJ0 1406 aa18.85■□□□□ 0.61
CLN3-253ENST00000636977 TSPOAP1O95153 1857 aa18.85■□□□□ 0.61
CLN3-253ENST00000636977 TXNDC2Q86VQ3 553 aa18.84■□□□□ 0.61
CLN3-253ENST00000636977 C1orf115Q9H7X2 142 aa18.84■□□□□ 0.61
CLN3-253ENST00000636977 LNPKQ9C0E8 428 aa18.84■□□□□ 0.61
CLN3-253ENST00000636977 RIMS2Q9UQ26 1411 aa18.84■□□□□ 0.61
CLN3-253ENST00000636977 MAP2P11137 1827 aaKnown RBP18.83■□□□□ 0.61
CLN3-253ENST00000636977 ZMYM3Q14202 1370 aa18.83■□□□□ 0.61
CLN3-253ENST00000636977 RRS1Q15050 365 aaKnown RBP18.83■□□□□ 0.61
CLN3-253ENST00000636977 KIF16BQ96L93 1317 aa18.83■□□□□ 0.6
CLN3-253ENST00000636977 METP08581 1390 aa18.83■□□□□ 0.6
CLN3-253ENST00000636977 NFE2L2Q16236 605 aa18.82■□□□□ 0.6
CLN3-253ENST00000636977 C22orf23Q9BZE7 217 aa18.82■□□□□ 0.6
CLN3-253ENST00000636977 PNNQ9H307 717 aaKnown RBP18.82■□□□□ 0.6
CLN3-253ENST00000636977 IPO8O15397 1037 aaKnown RBP18.81■□□□□ 0.6
CLN3-253ENST00000636977 VAMP4O75379 141 aa18.81■□□□□ 0.6
CLN3-253ENST00000636977 IL13P35225 146 aa18.81■□□□□ 0.6
CLN3-253ENST00000636977 FAM83GA6ND36 823 aa18.81■□□□□ 0.6
CLN3-253ENST00000636977 WASLO00401 505 aaPredicted RBP18.8■□□□□ 0.6
CLN3-253ENST00000636977 ALDH1L2Q3SY69 923 aa18.8■□□□□ 0.6
CLN3-253ENST00000636977 PPIP5K1Q6PFW1 1433 aa18.8■□□□□ 0.6
CLN3-253ENST00000636977 DCTN1Q14203 1278 aa18.8■□□□□ 0.6
CLN3-253ENST00000636977 MBIPQ9NS73 344 aa18.79■□□□□ 0.6
CLN3-253ENST00000636977 CDC42BPGQ6DT37 1551 aa18.79■□□□□ 0.6
CLN3-253ENST00000636977 MRPL50Q8N5N7 158 aaKnown RBP18.79■□□□□ 0.6
CLN3-253ENST00000636977 RIMBP3CA6NJZ7 1639 aa18.79■□□□□ 0.6
CLN3-253ENST00000636977 RIMBP3BA6NNM3 1639 aa18.79■□□□□ 0.6
CLN3-253ENST00000636977 RIMBP3Q9UFD9 1639 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms