RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 RRS1Q15050 365 aaKnown RBP15.49■□□□□ 0.07
MSH6-213ENST00000614496 HMMRO75330 724 aa15.48■□□□□ 0.07
MSH6-213ENST00000614496 WAPLQ7Z5K2 1190 aa15.48■□□□□ 0.07
MSH6-213ENST00000614496 CFAP44Q96MT7 982 aa15.48■□□□□ 0.07
MSH6-213ENST00000614496 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.48■□□□□ 0.079e-9■■■■■ 31
MSH6-213ENST00000614496 GCC1Q96CN9 775 aa15.48■□□□□ 0.07
MSH6-213ENST00000614496 TNPO1Q92973 898 aaKnown RBP15.48■□□□□ 0.07
MSH6-213ENST00000614496 STK31Q9BXU1 1019 aa15.47■□□□□ 0.07
MSH6-213ENST00000614496 K7ELQ4 463 aaPredicted RBP15.47■□□□□ 0.07
MSH6-213ENST00000614496 CAVIN1Q6NZI2 390 aaKnown RBP15.47■□□□□ 0.07
MSH6-213ENST00000614496 LTV1Q96GA3 475 aaPredicted RBP15.47■□□□□ 0.07
MSH6-213ENST00000614496 RBM42Q9BTD8 480 aaKnown RBP15.47■□□□□ 0.07
MSH6-213ENST00000614496 RPGRIP1LQ68CZ1 1315 aa15.47■□□□□ 0.07
MSH6-213ENST00000614496 CROCC2H7BZ55 1655 aa15.47■□□□□ 0.07
MSH6-213ENST00000614496 EMILIN1Q9Y6C2 1016 aa15.46■□□□□ 0.07
MSH6-213ENST00000614496 FYB1O15117 783 aa15.46■□□□□ 0.07
MSH6-213ENST00000614496 FCHSD2O94868 740 aa15.46■□□□□ 0.07
MSH6-213ENST00000614496 NASPP49321 788 aaPredicted RBP15.46■□□□□ 0.07
MSH6-213ENST00000614496 CCDC27Q2M243 656 aa15.46■□□□□ 0.06
MSH6-213ENST00000614496 CFAP65Q6ZU64 1925 aaKnown RBP15.46■□□□□ 0.06
MSH6-213ENST00000614496 TTC37Q6PGP7 1564 aa15.45■□□□□ 0.06
MSH6-213ENST00000614496 HDAC1Q13547 482 aaPredicted RBP15.45■□□□□ 0.06
MSH6-213ENST00000614496 INTS3Q68E01 1043 aaKnown RBP15.45■□□□□ 0.06
MSH6-213ENST00000614496 SSFA2P28290 1259 aa15.45■□□□□ 0.06
MSH6-213ENST00000614496 USP19O94966 1318 aa15.45■□□□□ 0.06
MSH6-213ENST00000614496 ATP10AO60312 1499 aa15.45■□□□□ 0.06
MSH6-213ENST00000614496 NFE2L2Q16236 605 aa15.44■□□□□ 0.06
MSH6-213ENST00000614496 TXNDC2Q86VQ3 553 aa15.44■□□□□ 0.06
MSH6-213ENST00000614496 VSIG10Q8N0Z9 540 aa15.44■□□□□ 0.06
MSH6-213ENST00000614496 ADCY10Q96PN6 1610 aa15.44■□□□□ 0.06
MSH6-213ENST00000614496 RRAGDQ9NQL2 400 aaPredicted RBP15.44■□□□□ 0.06
MSH6-213ENST00000614496 ESPNB1AK53 854 aa15.43■□□□□ 0.06
MSH6-213ENST00000614496 FAM83GA6ND36 823 aa15.43■□□□□ 0.06
MSH6-213ENST00000614496 SMARCA5O60264 1052 aaPredicted RBP15.43■□□□□ 0.06
MSH6-213ENST00000614496 TBC1D9Q6ZT07 1266 aa15.43■□□□□ 0.06
MSH6-213ENST00000614496 PRPF40AO75400 957 aaKnown RBP15.43■□□□□ 0.06
MSH6-213ENST00000614496 KCNJ4P48050 445 aa15.43■□□□□ 0.06
MSH6-213ENST00000614496 SULT6B1Q6IMI4 303 aa15.43■□□□□ 0.06
MSH6-213ENST00000614496 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.43■□□□□ 0.06
MSH6-213ENST00000614496 UGGT1Q9NYU2 1555 aa15.43■□□□□ 0.06
MSH6-213ENST00000614496 REC8O95072 547 aa15.43■□□□□ 0.06
MSH6-213ENST00000614496 FBXO31Q5XUX0 539 aaPredicted RBP15.43■□□□□ 0.06
MSH6-213ENST00000614496 RNF214Q8ND24 703 aa15.43■□□□□ 0.06
MSH6-213ENST00000614496 ANO2Q9NQ90 1003 aa15.43■□□□□ 0.06
MSH6-213ENST00000614496 AMPHP49418 695 aa15.42■□□□□ 0.06
MSH6-213ENST00000614496 NUCB1Q02818 461 aa15.42■□□□□ 0.06
MSH6-213ENST00000614496 PTPRTO14522 1441 aa15.42■□□□□ 0.06
MSH6-213ENST00000614496 NME9Q86XW9 330 aa15.42■□□□□ 0.06
MSH6-213ENST00000614496 ERVK-7P63135 1459 aa15.42■□□□□ 0.06
MSH6-213ENST00000614496 ATAD2Q6PL18 1390 aa15.42■□□□□ 0.06
MSH6-213ENST00000614496 NUCB2P80303 420 aa15.42■□□□□ 0.06
MSH6-213ENST00000614496 TSPYL6Q8N831 410 aa15.42■□□□□ 0.06
MSH6-213ENST00000614496 ANKRD36BQ8N2N9 1353 aa15.41■□□□□ 0.06
MSH6-213ENST00000614496 ZBTB40Q9NUA8 1239 aa15.41■□□□□ 0.06
MSH6-213ENST00000614496 LMOD2Q6P5Q4 547 aa15.41■□□□□ 0.06
MSH6-213ENST00000614496 MIS18AQ9NYP9 233 aa15.41■□□□□ 0.06
MSH6-213ENST00000614496 TRIM35Q9UPQ4 493 aa15.41■□□□□ 0.06
MSH6-213ENST00000614496 ALDH1L2Q3SY69 923 aa15.41■□□□□ 0.06
MSH6-213ENST00000614496 SMC5Q8IY18 1101 aa15.41■□□□□ 0.06
MSH6-213ENST00000614496 SLC52A1Q9NWF4 448 aa15.4■□□□□ 0.06
MSH6-213ENST00000614496 ABCC2Q92887 1545 aa15.4■□□□□ 0.06
MSH6-213ENST00000614496 NEK4P51957 841 aa15.4■□□□□ 0.06
MSH6-213ENST00000614496 NGDNQ8NEJ9 315 aaKnown RBP15.4■□□□□ 0.06
MSH6-213ENST00000614496 PREX2Q70Z35 1606 aa15.4■□□□□ 0.06
MSH6-213ENST00000614496 FKBP5Q13451 457 aaPredicted RBP15.39■□□□□ 0.05
MSH6-213ENST00000614496 RABEP1Q15276 862 aa15.39■□□□□ 0.05
MSH6-213ENST00000614496 CYB5RLQ6IPT4 315 aa15.39■□□□□ 0.05
MSH6-213ENST00000614496 TSPYL4Q9UJ04 414 aa15.39■□□□□ 0.05
MSH6-213ENST00000614496 SLC4A2P04920 1241 aa15.39■□□□□ 0.05
MSH6-213ENST00000614496 BMP2KLQ5H9B9 411 aa15.39■□□□□ 0.05
MSH6-213ENST00000614496 PHACTR3Q96KR7 559 aa15.39■□□□□ 0.05
MSH6-213ENST00000614496 ABCC11Q96J66 1382 aa15.39■□□□□ 0.05
MSH6-213ENST00000614496 KIAA1211Q6ZU35 1233 aa15.39■□□□□ 0.05
MSH6-213ENST00000614496 CIZ1Q9ULV3 898 aaPredicted RBP15.39■□□□□ 0.05
MSH6-213ENST00000614496 HDGFP51858 240 aaKnown RBP15.39■□□□□ 0.05
MSH6-213ENST00000614496 MCM10Q7L590 875 aa15.38■□□□□ 0.05
MSH6-213ENST00000614496 MBIPQ9NS73 344 aa15.38■□□□□ 0.05
MSH6-213ENST00000614496 A0A1W2PP64 1363 aa15.38■□□□□ 0.05
MSH6-213ENST00000614496 OSCARQ8IYS5 282 aa15.38■□□□□ 0.05
MSH6-213ENST00000614496 ZRANB1Q9UGI0 708 aa15.38■□□□□ 0.05
MSH6-213ENST00000614496 MPNDQ8N594 471 aa15.37■□□□□ 0.05
MSH6-213ENST00000614496 C16orf71Q8IYS4 520 aaPredicted RBP15.37■□□□□ 0.05
MSH6-213ENST00000614496 SYNMO15061 1565 aa15.37■□□□□ 0.05
MSH6-213ENST00000614496 NSD2O96028 1365 aa15.36■□□□□ 0.05
MSH6-213ENST00000614496 RTEL1-TNFRSF6BF6WH68 1400 aa15.36■□□□□ 0.05
MSH6-213ENST00000614496 CD109Q6YHK3 1445 aa15.36■□□□□ 0.05
MSH6-213ENST00000614496 KDM5AP29375 1690 aaKnown RBP15.36■□□□□ 0.05
MSH6-213ENST00000614496 C8orf58Q8NAV2 365 aa15.36■□□□□ 0.05
MSH6-213ENST00000614496 EIF2S2P20042 333 aaKnown RBP15.36■□□□□ 0.05
MSH6-213ENST00000614496 NUTM2GQ5VZR2 741 aa15.35■□□□□ 0.05
MSH6-213ENST00000614496 ANTXR1Q9H6X2 564 aa15.35■□□□□ 0.05
MSH6-213ENST00000614496 GAS2L2Q8NHY3 880 aa15.35■□□□□ 0.05
MSH6-213ENST00000614496 FAM13BQ9NYF5 915 aa15.35■□□□□ 0.05
MSH6-213ENST00000614496 R3HCC1Q9Y3T6 440 aaKnown RBP15.35■□□□□ 0.05
MSH6-213ENST00000614496 CDC42BPBQ9Y5S2 1711 aa15.35■□□□□ 0.05
MSH6-213ENST00000614496 ZNF428Q96B54 188 aa15.35■□□□□ 0.05
MSH6-213ENST00000614496 EXOC6BQ9Y2D4 811 aa15.35■□□□□ 0.05
MSH6-213ENST00000614496 IL16Q14005 1332 aa15.35■□□□□ 0.05
MSH6-213ENST00000614496 SYAP1Q96A49 352 aaPredicted RBP15.34■□□□□ 0.05
MSH6-213ENST00000614496 MYO5CQ9NQX4 1742 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms