RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	ACE	P12821	1306 aa		14.08	□□□□□ -0.16
PTPN2-208	ENST00000589216	NWD2	Q9ULI1	1742 aa		14.07	□□□□□ -0.16
PTPN2-208	ENST00000589216	BCL9L	Q86UU0	1499 aa		14.07	□□□□□ -0.16
PTPN2-208	ENST00000589216	LMOD2	Q6P5Q4	547 aa		14.07	□□□□□ -0.16
PTPN2-208	ENST00000589216	CCDC61	Q9Y6R9	512 aa		14.07	□□□□□ -0.16
PTPN2-208	ENST00000589216	CLSPN	Q9HAW4	1339 aa		14.07	□□□□□ -0.16
PTPN2-208	ENST00000589216	SLIT2	O94813	1529 aa		14.06	□□□□□ -0.16
PTPN2-208	ENST00000589216	ZNF772	Q68DY9	489 aa	Predicted RBP	14.06	□□□□□ -0.16
PTPN2-208	ENST00000589216	RGS12	O14924	1447 aa		14.06	□□□□□ -0.16
PTPN2-208	ENST00000589216	USP6	P35125	1406 aa		14.06	□□□□□ -0.16
PTPN2-208	ENST00000589216	GLI3	P10071	1580 aa		14.05	□□□□□ -0.16
PTPN2-208	ENST00000589216	COL14A1	Q05707	1796 aa	Known RBP	14.05	□□□□□ -0.16
PTPN2-208	ENST00000589216	PLEKHG3	A1L390	1219 aa		14.05	□□□□□ -0.16
PTPN2-208	ENST00000589216	NGLY1	Q96IV0	654 aa		14.05	□□□□□ -0.16
PTPN2-208	ENST00000589216	EVC2	Q86UK5	1308 aa		14.05	□□□□□ -0.16
PTPN2-208	ENST00000589216	ATRN	O75882	1429 aa		14.05	□□□□□ -0.16
PTPN2-208	ENST00000589216	CD163L1	Q9NR16	1453 aa		14.04	□□□□□ -0.16
PTPN2-208	ENST00000589216	PAK3	O75914	559 aa	Predicted RBP	14.03	□□□□□ -0.16
PTPN2-208	ENST00000589216	FNBP4	Q8N3X1	1017 aa	Predicted RBP	14.03	□□□□□ -0.16
PTPN2-208	ENST00000589216	USP47	Q96K76	1375 aa		14.03	□□□□□ -0.16
PTPN2-208	ENST00000589216	SSH2	Q76I76	1423 aa		14.03	□□□□□ -0.16
PTPN2-208	ENST00000589216	CDK12	Q9NYV4	1490 aa	Predicted RBP	14.03	□□□□□ -0.16
PTPN2-208	ENST00000589216	CCER1	Q8TC90	406 aa	Predicted RBP	14.02	□□□□□ -0.17
PTPN2-208	ENST00000589216	TESK2	Q96S53	571 aa		14.02	□□□□□ -0.17
PTPN2-208	ENST00000589216	CABP1	Q9NZU7	370 aa		14.02	□□□□□ -0.17
PTPN2-208	ENST00000589216	USP21	Q9UK80	565 aa		14.02	□□□□□ -0.17
PTPN2-208	ENST00000589216	MYOM1	P52179	1685 aa		14.01	□□□□□ -0.17
PTPN2-208	ENST00000589216	ATAD2	Q6PL18	1390 aa		14.01	□□□□□ -0.17
PTPN2-208	ENST00000589216	NUTM2G	Q5VZR2	741 aa		14.01	□□□□□ -0.17
PTPN2-208	ENST00000589216	USP54	Q70EL1	1684 aa		14.01	□□□□□ -0.17
PTPN2-208	ENST00000589216	LMO7	Q8WWI1	1683 aa		14.01	□□□□□ -0.17
PTPN2-208	ENST00000589216	SLIT3	O75094	1523 aa		14	□□□□□ -0.17
PTPN2-208	ENST00000589216	CPSF1	Q10570	1443 aa	Known RBP	14	□□□□□ -0.17
PTPN2-208	ENST00000589216	USP19	O94966	1318 aa		13.99	□□□□□ -0.17
PTPN2-208	ENST00000589216	ST20-MTHFS	A0A0A6YYL1	179 aa		13.99	□□□□□ -0.17
PTPN2-208	ENST00000589216	HAP1	P54257	671 aa	Predicted RBP	13.99	□□□□□ -0.17
PTPN2-208	ENST00000589216	QTRT2	Q9H974	415 aa	Known RBP	13.99	□□□□□ -0.17
PTPN2-208	ENST00000589216	RXRB	P28702	533 aa		13.98	□□□□□ -0.17
PTPN2-208	ENST00000589216	BRWD3	Q6RI45	1802 aa		13.98	□□□□□ -0.17
PTPN2-208	ENST00000589216	KIAA0232	Q92628	1395 aa		13.97	□□□□□ -0.17
PTPN2-208	ENST00000589216	FAM83G	A6ND36	823 aa		13.97	□□□□□ -0.17
PTPN2-208	ENST00000589216	RBM6	P78332	1123 aa	Known RBP	13.96	□□□□□ -0.17
PTPN2-208	ENST00000589216	TRPC5	Q9UL62	973 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN2-208	ENST00000589216	TIMELESS	Q9UNS1	1208 aa		13.96	□□□□□ -0.17
PTPN2-208	ENST00000589216	BRD4	O60885	1362 aa	Predicted RBP	13.96	□□□□□ -0.18
PTPN2-208	ENST00000589216	NFAT5	O94916	1531 aa		13.95	□□□□□ -0.18
PTPN2-208	ENST00000589216	UNC5CL	Q8IV45	518 aa		13.95	□□□□□ -0.18
PTPN2-208	ENST00000589216	ABTB2	Q8N961	1025 aa		13.95	□□□□□ -0.18
PTPN2-208	ENST00000589216		A0A1W2PP64	1363 aa		13.95	□□□□□ -0.18
PTPN2-208	ENST00000589216	KTN1	Q86UP2	1357 aa	Known RBP	13.95	□□□□□ -0.18
PTPN2-208	ENST00000589216	COL18A1	P39060	1754 aa		13.94	□□□□□ -0.18
PTPN2-208	ENST00000589216	CAMTA1	Q9Y6Y1	1673 aa		13.94	□□□□□ -0.18
PTPN2-208	ENST00000589216	RGPD5	Q99666	1765 aa		13.94	□□□□□ -0.18
PTPN2-208	ENST00000589216	CHRNA2	Q15822	529 aa		13.93	□□□□□ -0.18
PTPN2-208	ENST00000589216	PRDM11	Q9NQV5	511 aa		13.93	□□□□□ -0.18
PTPN2-208	ENST00000589216	THSD7A	Q9UPZ6	1657 aa		13.93	□□□□□ -0.18
PTPN2-208	ENST00000589216	EP400	Q96L91	3159 aa		13.93	□□□□□ -0.18
PTPN2-208	ENST00000589216	TTC21B	Q7Z4L5	1316 aa		13.92	□□□□□ -0.18
PTPN2-208	ENST00000589216	LTN1	O94822	1766 aa		13.92	□□□□□ -0.18
PTPN2-208	ENST00000589216	ZC3H6	P61129	1189 aa	Known RBP	13.92	□□□□□ -0.18
PTPN2-208	ENST00000589216	SLC12A5	Q9H2X9	1139 aa		13.92	□□□□□ -0.18
PTPN2-208	ENST00000589216	BTG4	Q9NY30	223 aa		13.92	□□□□□ -0.18
PTPN2-208	ENST00000589216	CPD	O75976	1380 aa		13.92	□□□□□ -0.18
PTPN2-208	ENST00000589216	GJD4	Q96KN9	370 aa	Predicted RBP	13.91	□□□□□ -0.18
PTPN2-208	ENST00000589216	EDC4	Q6P2E9	1401 aa	Known RBP	13.9	□□□□□ -0.18
PTPN2-208	ENST00000589216	KIF20B	Q96Q89	1820 aa		13.9	□□□□□ -0.18
PTPN2-208	ENST00000589216	WNK3	Q9BYP7	1800 aa		13.9	□□□□□ -0.18
PTPN2-208	ENST00000589216	VPS72	Q15906	364 aa		13.9	□□□□□ -0.18
PTPN2-208	ENST00000589216	TMC1	Q8TDI8	760 aa		13.9	□□□□□ -0.18
PTPN2-208	ENST00000589216	ZRANB1	Q9UGI0	708 aa		13.9	□□□□□ -0.18
PTPN2-208	ENST00000589216	COL5A2	P05997	1499 aa	Predicted RBP	13.89	□□□□□ -0.19
PTPN2-208	ENST00000589216	NLRP6	P59044	892 aa		13.89	□□□□□ -0.19
PTPN2-208	ENST00000589216	NLRP13	Q86W25	1043 aa		13.89	□□□□□ -0.19
PTPN2-208	ENST00000589216	OVOS2	A0A0J9YW53	1432 aa		13.89	□□□□□ -0.19
PTPN2-208	ENST00000589216	OVOS2	Q6IE36	1432 aa		13.89	□□□□□ -0.19
PTPN2-208	ENST00000589216	TTC21A	Q8NDW8	1320 aa		13.89	□□□□□ -0.19
PTPN2-208	ENST00000589216	NINL	Q9Y2I6	1382 aa		13.88	□□□□□ -0.19
PTPN2-208	ENST00000589216	GC	P02774	474 aa		13.88	□□□□□ -0.19
PTPN2-208	ENST00000589216	NME9	Q86XW9	330 aa		13.88	□□□□□ -0.19
PTPN2-208	ENST00000589216	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.88	□□□□□ -0.19	1e-6	■□□□□ 10.9
PTPN2-208	ENST00000589216	PUS7	Q96PZ0	661 aa	Known RBP	13.88	□□□□□ -0.19
PTPN2-208	ENST00000589216	ANKRD36B	Q8N2N9	1353 aa		13.87	□□□□□ -0.19
PTPN2-208	ENST00000589216	ZNF692	Q9BU19	519 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPN2-208	ENST00000589216	USP31	Q70CQ4	1352 aa		13.86	□□□□□ -0.19
PTPN2-208	ENST00000589216	TMF1	P82094	1093 aa		13.86	□□□□□ -0.19
PTPN2-208	ENST00000589216	CCDC9	Q9Y3X0	531 aa	Known RBP	13.86	□□□□□ -0.19
PTPN2-208	ENST00000589216	SPATA31A5	Q5VU36	1347 aa		13.86	□□□□□ -0.19
PTPN2-208	ENST00000589216	SPATA31A7	Q8IWB4	1347 aa		13.86	□□□□□ -0.19
PTPN2-208	ENST00000589216	SOX12	O15370	315 aa		13.85	□□□□□ -0.19
PTPN2-208	ENST00000589216	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.85	□□□□□ -0.19
PTPN2-208	ENST00000589216	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
PTPN2-208	ENST00000589216	STRN4	Q9NRL3	753 aa		13.85	□□□□□ -0.19
PTPN2-208	ENST00000589216	ABCC6	O95255	1503 aa		13.85	□□□□□ -0.19
PTPN2-208	ENST00000589216	LRRC37A3	O60309	1634 aa		13.84	□□□□□ -0.19
PTPN2-208	ENST00000589216	ZBTB7C	A1YPR0	619 aa		13.84	□□□□□ -0.19
PTPN2-208	ENST00000589216	HSPA5	P11021	654 aa	Known RBP	13.84	□□□□□ -0.19
PTPN2-208	ENST00000589216	TERF2IP	Q9NYB0	399 aa		13.84	□□□□□ -0.19
PTPN2-208	ENST00000589216	AATK	Q6ZMQ8	1374 aa		13.83	□□□□□ -0.19
PTPN2-208	ENST00000589216	FAM98C	Q17RN3	349 aa	Known RBP	13.83	□□□□□ -0.2
PTPN2-208	ENST00000589216	SEPT12	Q8IYM1	358 aa		13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms