RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	RBM25	P49756	843 aa	Known RBP	11.97	□□□□□ -0.49
PPP4R1-222	ENST00000582594	GBP4	Q96PP9	640 aa		11.97	□□□□□ -0.49
PPP4R1-222	ENST00000582594	C1orf115	Q9H7X2	142 aa		11.97	□□□□□ -0.49
PPP4R1-222	ENST00000582594	TRIM35	Q9UPQ4	493 aa		11.97	□□□□□ -0.49
PPP4R1-222	ENST00000582594	CABP2	Q9NPB3	220 aa		11.97	□□□□□ -0.49
PPP4R1-222	ENST00000582594	ZBTB40	Q9NUA8	1239 aa		11.97	□□□□□ -0.49
PPP4R1-222	ENST00000582594	NCOA3	Q9Y6Q9	1424 aa		11.97	□□□□□ -0.49
PPP4R1-222	ENST00000582594	NUCB1	Q02818	461 aa		11.97	□□□□□ -0.49
PPP4R1-222	ENST00000582594	QRICH2	Q9H0J4	1663 aa		11.96	□□□□□ -0.49
PPP4R1-222	ENST00000582594	SSFA2	P28290	1259 aa		11.96	□□□□□ -0.49
PPP4R1-222	ENST00000582594	RAB3GAP1	Q15042	981 aa		11.96	□□□□□ -0.49
PPP4R1-222	ENST00000582594	ANKRD45	Q5TZF3	282 aa		11.96	□□□□□ -0.49
PPP4R1-222	ENST00000582594	CHD1L	Q86WJ1	897 aa		11.96	□□□□□ -0.49
PPP4R1-222	ENST00000582594	SNX21	Q969T3	373 aa		11.96	□□□□□ -0.49
PPP4R1-222	ENST00000582594	GGNBP2	Q9H3C7	697 aa		11.96	□□□□□ -0.49
PPP4R1-222	ENST00000582594	CD109	Q6YHK3	1445 aa		11.96	□□□□□ -0.49
PPP4R1-222	ENST00000582594	DEPDC5	O75140	1603 aa		11.96	□□□□□ -0.5
PPP4R1-222	ENST00000582594	RRP9	O43818	475 aa	Known RBP	11.96	□□□□□ -0.5
PPP4R1-222	ENST00000582594	ZMYND15	Q9H091	742 aa		11.96	□□□□□ -0.5
PPP4R1-222	ENST00000582594	ABCA9	Q8IUA7	1624 aa		11.95	□□□□□ -0.5
PPP4R1-222	ENST00000582594	SBNO2	Q9Y2G9	1366 aa		11.95	□□□□□ -0.5
PPP4R1-222	ENST00000582594	RIPK4	P57078	832 aa		11.95	□□□□□ -0.5
PPP4R1-222	ENST00000582594	MYO3A	Q8NEV4	1616 aa		11.95	□□□□□ -0.5
PPP4R1-222	ENST00000582594	KIF2C	Q99661	725 aa		11.95	□□□□□ -0.5
PPP4R1-222	ENST00000582594	AK9	Q5TCS8	1911 aa		11.94	□□□□□ -0.5
PPP4R1-222	ENST00000582594	PLEKHF1	Q96S99	279 aa		11.94	□□□□□ -0.5
PPP4R1-222	ENST00000582594	CT47B1	P0C2W7	299 aa	Predicted RBP	11.94	□□□□□ -0.5
PPP4R1-222	ENST00000582594	GAS2L2	Q8NHY3	880 aa		11.94	□□□□□ -0.5
PPP4R1-222	ENST00000582594	IFT172	Q9UG01	1749 aa		11.93	□□□□□ -0.5
PPP4R1-222	ENST00000582594	ATP7A	Q04656	1500 aa		11.93	□□□□□ -0.5
PPP4R1-222	ENST00000582594	C14orf93	Q9H972	538 aa	Known RBP	11.93	□□□□□ -0.5
PPP4R1-222	ENST00000582594	ISY1	Q9ULR0	285 aa	Known RBP	11.93	□□□□□ -0.5
PPP4R1-222	ENST00000582594	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.93	□□□□□ -0.5
PPP4R1-222	ENST00000582594	ADGRB2	O60241	1585 aa		11.92	□□□□□ -0.5
PPP4R1-222	ENST00000582594		K7ELQ4	463 aa	Predicted RBP	11.92	□□□□□ -0.5
PPP4R1-222	ENST00000582594	NCL	P19338	710 aa	Known RBP	11.92	□□□□□ -0.5
PPP4R1-222	ENST00000582594	SKOR2	Q2VWA4	1001 aa	Predicted RBP	11.92	□□□□□ -0.5
PPP4R1-222	ENST00000582594	TBC1D9	Q6ZT07	1266 aa		11.92	□□□□□ -0.5
PPP4R1-222	ENST00000582594	IPO8	O15397	1037 aa	Known RBP	11.92	□□□□□ -0.5
PPP4R1-222	ENST00000582594	NASP	P49321	788 aa	Predicted RBP	11.92	□□□□□ -0.5
PPP4R1-222	ENST00000582594	VWDE	Q8N2E2	1590 aa		11.92	□□□□□ -0.5
PPP4R1-222	ENST00000582594	ZC3H13	Q5T200	1668 aa	Known RBP	11.92	□□□□□ -0.5
PPP4R1-222	ENST00000582594	DDX49	Q9Y6V7	483 aa	Known RBP	11.91	□□□□□ -0.5
PPP4R1-222	ENST00000582594	EVC2	Q86UK5	1308 aa		11.91	□□□□□ -0.5
PPP4R1-222	ENST00000582594	KIF16B	Q96L93	1317 aa		11.91	□□□□□ -0.5
PPP4R1-222	ENST00000582594	NRXN1	Q9ULB1	1477 aa		11.91	□□□□□ -0.5
PPP4R1-222	ENST00000582594	ELL2	O00472	640 aa	Predicted RBP	11.91	□□□□□ -0.5
PPP4R1-222	ENST00000582594	BMP2KL	Q5H9B9	411 aa		11.91	□□□□□ -0.5
PPP4R1-222	ENST00000582594	KIAA1211	Q6ZU35	1233 aa		11.91	□□□□□ -0.5
PPP4R1-222	ENST00000582594	STK26	Q9P289	416 aa		11.91	□□□□□ -0.5
PPP4R1-222	ENST00000582594	ANKRD36B	Q8N2N9	1353 aa		11.9	□□□□□ -0.5
PPP4R1-222	ENST00000582594	MROH1	Q8NDA8	1641 aa		11.9	□□□□□ -0.5
PPP4R1-222	ENST00000582594	SRPK2	P78362	688 aa	Known RBP	11.89	□□□□□ -0.51
PPP4R1-222	ENST00000582594	THUMPD2	Q9BTF0	503 aa	Known RBP	11.89	□□□□□ -0.51
PPP4R1-222	ENST00000582594	PPIP5K1	Q6PFW1	1433 aa		11.89	□□□□□ -0.51
PPP4R1-222	ENST00000582594	ABCC11	Q96J66	1382 aa		11.89	□□□□□ -0.51
PPP4R1-222	ENST00000582594	GOLGA6L22	H0YM25	854 aa		11.89	□□□□□ -0.51
PPP4R1-222	ENST00000582594	BAG4	O95429	457 aa	Known RBP	11.89	□□□□□ -0.51
PPP4R1-222	ENST00000582594	CCDC173	Q0VFZ6	552 aa		11.89	□□□□□ -0.51
PPP4R1-222	ENST00000582594	MCTP1	Q6DN14	999 aa		11.89	□□□□□ -0.51
PPP4R1-222	ENST00000582594	GGT6	Q6P531	493 aa		11.89	□□□□□ -0.51
PPP4R1-222	ENST00000582594	FBLN1	P23142	703 aa		11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	EFCAB6	Q5THR3	1501 aa		11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	ADGRL1	O94910	1474 aa		11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	USP32	Q8NFA0	1604 aa		11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	ANP32B	Q92688	251 aa	Known RBP	11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	SETBP1	Q9Y6X0	1596 aa		11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	FANCA	O15360	1455 aa		11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	ADGRB1	O14514	1584 aa		11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	RBM10	P98175	930 aa	Known RBP	11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	NCBP3	Q53F19	620 aa	Known RBP	11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	NEURL4	Q96JN8	1562 aa		11.88	□□□□□ -0.51
PPP4R1-222	ENST00000582594	TULP4	Q9NRJ4	1543 aa		11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594		A0A1W2PP64	1363 aa		11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594	INO80	Q9ULG1	1556 aa	Predicted RBP	11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594	ZBTB7B	O15156	539 aa	Predicted RBP	11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594	TPM2	P07951	284 aa		11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594	CAVIN1	Q6NZI2	390 aa	Known RBP	11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594	DIAPH1	O60610	1272 aa	Known RBP	11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594	PTMS	P20962	102 aa		11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594	MSN	P26038	577 aa	Known RBP	11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594	RERE	Q9P2R6	1566 aa		11.87	□□□□□ -0.51
PPP4R1-222	ENST00000582594	ADGRB3	O60242	1522 aa		11.86	□□□□□ -0.51
PPP4R1-222	ENST00000582594	ZSCAN30	Q86W11	494 aa		11.86	□□□□□ -0.51
PPP4R1-222	ENST00000582594	SIRT2	Q8IXJ6	389 aa		11.86	□□□□□ -0.51
PPP4R1-222	ENST00000582594	TSPYL6	Q8N831	410 aa		11.86	□□□□□ -0.51
PPP4R1-222	ENST00000582594	IL16	Q14005	1332 aa		11.86	□□□□□ -0.51
PPP4R1-222	ENST00000582594	PKP1	Q13835	747 aa		11.86	□□□□□ -0.51
PPP4R1-222	ENST00000582594	PPP1R9B	Q96SB3	815 aa		11.86	□□□□□ -0.51
PPP4R1-222	ENST00000582594	NSD2	O96028	1365 aa		11.86	□□□□□ -0.51
PPP4R1-222	ENST00000582594	KLHL40	Q2TBA0	621 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	ALDH1L2	Q3SY69	923 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	GCC1	Q96CN9	775 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	ATAD2	Q6PL18	1390 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	FYB1	O15117	783 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	CDC45	O75419	566 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	PRKAR2B	P31323	418 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	CHAMP1	Q96JM3	812 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	PPL	O60437	1756 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.85	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms