RNA–Protein interactions for RNA: ENST00000571351.1

TNFRSF12A-203, Transcript of TNF receptor superfamily member 12A, human

TSL 2

Gene TNFRSF12A, Length 1,678 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF12A-203	ENST00000571351	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	27.91	■■■□□ 2.06
TNFRSF12A-203	ENST00000571351	TRPM3	Q9HCF6	1732 aa	Predicted RBP	27.91	■■■□□ 2.06
TNFRSF12A-203	ENST00000571351	FYB1	O15117	783 aa		27.91	■■■□□ 2.06
TNFRSF12A-203	ENST00000571351	ROBO1	Q9Y6N7	1651 aa		27.89	■■■□□ 2.06
TNFRSF12A-203	ENST00000571351	XPC	Q01831	940 aa	Predicted RBP	27.89	■■■□□ 2.06
TNFRSF12A-203	ENST00000571351	PSME1	Q06323	249 aa		27.88	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	NME9	Q86XW9	330 aa		27.87	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	NHSL1	Q5SYE7	1610 aa		27.87	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	PARD3	Q8TEW0	1356 aa		27.87	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	ANKRD26	Q9UPS8	1709 aa		27.87	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	PXDN	Q92626	1479 aa		27.87	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	PIK3C2A	O00443	1686 aa		27.87	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	GGNBP2	Q9H3C7	697 aa		27.86	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	BRD4	O60885	1362 aa	Predicted RBP	27.86	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	NSD2	O96028	1365 aa		27.86	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	NPHP3	Q7Z494	1330 aa		27.86	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	KRT28	Q7Z3Y7	464 aa		27.85	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	ZRANB1	Q9UGI0	708 aa		27.85	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	TOM1	O60784	492 aa		27.84	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	TTC21A	Q8NDW8	1320 aa		27.84	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	RALBP1	Q15311	655 aa		27.84	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	MARF1	Q9Y4F3	1742 aa	Known RBP	27.83	■■■□□ 2.05
TNFRSF12A-203	ENST00000571351	UBAP1L	F5GYI3	381 aa		27.82	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	ALS2	Q96Q42	1657 aa		27.81	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	SOS2	Q07890	1332 aa	Predicted RBP	27.8	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	OVOS2	A0A0J9YW53	1432 aa		27.8	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	OVOS2	Q6IE36	1432 aa		27.8	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	PAK3	O75914	559 aa	Predicted RBP	27.8	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	USP54	Q70EL1	1684 aa		27.79	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	AHDC1	Q5TGY3	1603 aa	Predicted RBP	27.78	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	SBNO1	A3KN83	1393 aa		27.77	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	USP31	Q70CQ4	1352 aa		27.77	■■■□□ 2.04
TNFRSF12A-203	ENST00000571351	PIP4K2B	P78356	416 aa		27.76	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	ABTB2	Q8N961	1025 aa		27.76	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	MORC1	Q86VD1	984 aa		27.75	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	MYBBP1A	Q9BQG0	1328 aa	Known RBP	27.74	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	TNS3	Q68CZ2	1445 aa		27.73	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	SPATA31A3	Q5VYP0	1347 aa		27.73	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	NUTM2G	Q5VZR2	741 aa		27.73	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	COG3	Q96JB2	828 aa		27.73	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	NLRP6	P59044	892 aa		27.72	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	PPP2R1A	P30153	589 aa		27.71	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	TNNT2	P45379	298 aa	Predicted RBP	27.71	■■■□□ 2.03
TNFRSF12A-203	ENST00000571351	FBLN1	P23142	703 aa		27.7	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	CCDC184	Q52MB2	194 aa		27.68	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	COL16A1	Q07092	1604 aa	Predicted RBP	27.68	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	PHLPP1	O60346	1717 aa		27.68	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	SCAF1	Q9H7N4	1312 aa	Known RBP	27.68	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	LMOD2	Q6P5Q4	547 aa		27.67	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	MAP2	P11137	1827 aa	Known RBP	27.67	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	MED1	Q15648	1581 aa	Predicted RBP	27.67	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	CRYBG1	Q9Y4K1	1723 aa		27.66	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	NLRP13	Q86W25	1043 aa		27.65	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	SLIT3	O75094	1523 aa		27.65	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	USP19	O94966	1318 aa		27.64	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	MRS2	Q9HD23	443 aa		27.64	■■■□□ 2.02
TNFRSF12A-203	ENST00000571351	ARHGEF10	O15013	1369 aa		27.63	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	AATK	Q6ZMQ8	1374 aa		27.63	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	NFAT5	O94916	1531 aa		27.61	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	PHRF1	Q9P1Y6	1649 aa	Known RBP	27.6	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	POLK	Q9UBT6	870 aa		27.6	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	SOX12	O15370	315 aa		27.59	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	LRRC59	Q96AG4	307 aa	Known RBP	27.59	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	MTHFS	P49914	203 aa		27.59	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	SMG6	Q86US8	1419 aa	Known RBP	27.58	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	RRS1	Q15050	365 aa	Known RBP	27.58	■■■□□ 2.01
TNFRSF12A-203	ENST00000571351	PLEKHG5	O94827	1062 aa		27.57	■■■□□ 2
TNFRSF12A-203	ENST00000571351	CABLES1	Q8TDN4	633 aa		27.57	■■■□□ 2
TNFRSF12A-203	ENST00000571351	EMILIN1	Q9Y6C2	1016 aa		27.57	■■■□□ 2
TNFRSF12A-203	ENST00000571351	ABCA3	Q99758	1704 aa		27.57	■■■□□ 2
TNFRSF12A-203	ENST00000571351	GC	P02774	474 aa		27.56	■■■□□ 2
TNFRSF12A-203	ENST00000571351	PEAK1	Q9H792	1746 aa		27.56	■■■□□ 2
TNFRSF12A-203	ENST00000571351	COL22A1	Q8NFW1	1626 aa	Predicted RBP	27.55	■■■□□ 2
TNFRSF12A-203	ENST00000571351	PNPLA6	Q8IY17	1366 aa		27.55	■■■□□ 2
TNFRSF12A-203	ENST00000571351	LTN1	O94822	1766 aa		27.55	■■■□□ 2
TNFRSF12A-203	ENST00000571351	MAP3K19	Q56UN5	1328 aa		27.53	■■■□□ 2
TNFRSF12A-203	ENST00000571351	KCNH5	Q8NCM2	988 aa		27.53	■■■□□ 2
TNFRSF12A-203	ENST00000571351	YTHDC1	Q96MU7	727 aa	Known RBP	27.53	■■■□□ 2
TNFRSF12A-203	ENST00000571351	COL3A1	P02461	1466 aa	Predicted RBP	27.51	■■□□□ 1.99
TNFRSF12A-203	ENST00000571351	CDK12	Q9NYV4	1490 aa	Predicted RBP	27.5	■■□□□ 1.99
TNFRSF12A-203	ENST00000571351	PNISR	Q8TF01	805 aa	Known RBP	27.49	■■□□□ 1.99
TNFRSF12A-203	ENST00000571351	INSR	P06213	1382 aa		27.49	■■□□□ 1.99
TNFRSF12A-203	ENST00000571351	PPM1G	O15355	546 aa	Predicted RBP	27.48	■■□□□ 1.99
TNFRSF12A-203	ENST00000571351	ARHGEF25	Q86VW2	580 aa		27.48	■■□□□ 1.99
TNFRSF12A-203	ENST00000571351	HSPA1L	P34931	641 aa		27.47	■■□□□ 1.99
TNFRSF12A-203	ENST00000571351	SHPRH	Q149N8	1683 aa		27.47	■■□□□ 1.99
TNFRSF12A-203	ENST00000571351	ZC3H6	P61129	1189 aa	Known RBP	27.45	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	COL18A1	P39060	1754 aa		27.44	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	FLT4	P35916	1363 aa		27.44	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	KIF24	Q5T7B8	1368 aa		27.44	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	HSP90AB2P	Q58FF8	381 aa		27.43	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	CPD	O75976	1380 aa		27.43	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	FAM9B	Q8IZU0	186 aa		27.43	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	HOXC9	P31274	260 aa		27.42	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	KIAA0232	Q92628	1395 aa		27.41	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	CFAP53	Q96M91	514 aa		27.41	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	RTL1	A6NKG5	1358 aa		27.41	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	JCAD	Q9P266	1359 aa		27.41	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	AMPH	P49418	695 aa		27.4	■■□□□ 1.98
TNFRSF12A-203	ENST00000571351	RGPD5	Q99666	1765 aa		27.4	■■□□□ 1.98

Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms