RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CABLES1Q8TDN4 633 aa21.41■■□□□ 1.02
VPS39-210ENST00000568357 PLEKHG3A1L390 1219 aa21.4■■□□□ 1.02
VPS39-210ENST00000568357 PLEKHG5O94827 1062 aa21.4■■□□□ 1.02
VPS39-210ENST00000568357 GJD4Q96KN9 370 aaPredicted RBP21.39■■□□□ 1.01
VPS39-210ENST00000568357 ACEP12821 1306 aa21.38■■□□□ 1.01
VPS39-210ENST00000568357 RALGAPBQ86X10 1494 aa21.38■■□□□ 1.01
VPS39-210ENST00000568357 POLR3AO14802 1390 aaPredicted RBP21.36■■□□□ 1.01
VPS39-210ENST00000568357 ARHGEF10O15013 1369 aa21.36■■□□□ 1.01
VPS39-210ENST00000568357 EVC2Q86UK5 1308 aa21.36■■□□□ 1.01
VPS39-210ENST00000568357 CLSPNQ9HAW4 1339 aa21.36■■□□□ 1.01
VPS39-210ENST00000568357 PAK3O75914 559 aaPredicted RBP21.36■■□□□ 1.01
VPS39-210ENST00000568357 QRICH2Q9H0J4 1663 aa21.35■■□□□ 1.01
VPS39-210ENST00000568357 CABP1Q9NZU7 370 aa21.35■■□□□ 1.01
VPS39-210ENST00000568357 PPIP5K1Q6PFW1 1433 aa21.33■■□□□ 1.01
VPS39-210ENST00000568357 HAP1P54257 671 aaPredicted RBP21.32■■□□□ 1
VPS39-210ENST00000568357 TIMELESSQ9UNS1 1208 aa21.32■■□□□ 1
VPS39-210ENST00000568357 SLIT2O94813 1529 aa21.32■■□□□ 1
VPS39-210ENST00000568357 TRPM3Q9HCF6 1732 aaPredicted RBP21.32■■□□□ 1
VPS39-210ENST00000568357 CCER1Q8TC90 406 aaPredicted RBP21.31■■□□□ 1
VPS39-210ENST00000568357 TOPAZ1Q8N9V7 1692 aa21.3■■□□□ 1
VPS39-210ENST00000568357 ITSN1Q15811 1721 aa21.29■■□□□ 1
VPS39-210ENST00000568357 PSDA5PKW4 1024 aaPredicted RBP21.29■■□□□ 1
VPS39-210ENST00000568357 PLCH1Q4KWH8 1693 aa21.28■■□□□ 1
VPS39-210ENST00000568357 SBNO2Q9Y2G9 1366 aa21.28■■□□□ 1
VPS39-210ENST00000568357 NUTM2GQ5VZR2 741 aa21.28■■□□□ 1
VPS39-210ENST00000568357 ST20-MTHFSA0A0A6YYL1 179 aa21.27■■□□□ 1
VPS39-210ENST00000568357 FAM83GA6ND36 823 aa21.27■■□□□ 1
VPS39-210ENST00000568357 UNC5CLQ8IV45 518 aa21.27■■□□□ 1
VPS39-210ENST00000568357 ALS2Q96Q42 1657 aa21.26■□□□□ 0.99
VPS39-210ENST00000568357 SF3B2Q13435 895 aaKnown RBP21.26■□□□□ 0.99
VPS39-210ENST00000568357 ABTB2Q8N961 1025 aa21.25■□□□□ 0.99
VPS39-210ENST00000568357 TESK2Q96S53 571 aa21.25■□□□□ 0.99
VPS39-210ENST00000568357 SEPT12Q8IYM1 358 aa21.23■□□□□ 0.99
VPS39-210ENST00000568357 ABCA3Q99758 1704 aa21.22■□□□□ 0.99
VPS39-210ENST00000568357 NWD2Q9ULI1 1742 aa21.21■□□□□ 0.99
VPS39-210ENST00000568357 USP6P35125 1406 aa21.21■□□□□ 0.99
VPS39-210ENST00000568357 ZNF692Q9BU19 519 aaPredicted RBP21.2■□□□□ 0.98
VPS39-210ENST00000568357 SSH2Q76I76 1423 aa21.2■□□□□ 0.98
VPS39-210ENST00000568357 BRD4O60885 1362 aaPredicted RBP21.19■□□□□ 0.98
VPS39-210ENST00000568357 RGPD1P0DJD0 1748 aa21.18■□□□□ 0.98
VPS39-210ENST00000568357 NLRP13Q86W25 1043 aa21.18■□□□□ 0.98
VPS39-210ENST00000568357 SLC12A5Q9H2X9 1139 aa21.18■□□□□ 0.98
VPS39-210ENST00000568357 BTG4Q9NY30 223 aa21.18■□□□□ 0.98
VPS39-210ENST00000568357 USP47Q96K76 1375 aa21.18■□□□□ 0.98
VPS39-210ENST00000568357 ZC3H6P61129 1189 aaKnown RBP21.17■□□□□ 0.98
VPS39-210ENST00000568357 TMC1Q8TDI8 760 aa21.17■□□□□ 0.98
VPS39-210ENST00000568357 PUS7Q96PZ0 661 aaKnown RBP21.17■□□□□ 0.98
VPS39-210ENST00000568357 CPSF1Q10570 1443 aaKnown RBP21.17■□□□□ 0.98
VPS39-210ENST00000568357 USP19O94966 1318 aa21.16■□□□□ 0.98
VPS39-210ENST00000568357 TTC21BQ7Z4L5 1316 aa21.16■□□□□ 0.98
VPS39-210ENST00000568357 VPS72Q15906 364 aa21.16■□□□□ 0.98
VPS39-210ENST00000568357 KRT27Q7Z3Y8 459 aa21.16■□□□□ 0.98
VPS39-210ENST00000568357 PRDM11Q9NQV5 511 aa21.16■□□□□ 0.98
VPS39-210ENST00000568357 NRAPQ86VF7 1730 aa21.15■□□□□ 0.98
VPS39-210ENST00000568357 KIAA0232Q92628 1395 aa21.15■□□□□ 0.98
VPS39-210ENST00000568357 BAG6P46379 1132 aa21.15■□□□□ 0.98
VPS39-210ENST00000568357 NLRP6P59044 892 aa21.15■□□□□ 0.98
VPS39-210ENST00000568357 CHRNA2Q15822 529 aa21.15■□□□□ 0.98
VPS39-210ENST00000568357 TNS1Q9HBL0 1735 aaKnown RBP21.15■□□□□ 0.98
VPS39-210ENST00000568357 GCP02774 474 aa21.14■□□□□ 0.97
VPS39-210ENST00000568357 CRYBG1Q9Y4K1 1723 aa21.14■□□□□ 0.97
VPS39-210ENST00000568357 KTN1Q86UP2 1357 aaKnown RBP21.13■□□□□ 0.97
VPS39-210ENST00000568357 SLC24A1O60721 1099 aa21.13■□□□□ 0.97
VPS39-210ENST00000568357 ONECUT3O60422 494 aaPredicted RBP21.12■□□□□ 0.97
VPS39-210ENST00000568357 CCDC9Q9Y3X0 531 aaKnown RBP21.12■□□□□ 0.97
VPS39-210ENST00000568357 CD163L1Q9NR16 1453 aa21.12■□□□□ 0.97
VPS39-210ENST00000568357 EN1Q05925 392 aaPredicted RBP21.1■□□□□ 0.97
VPS39-210ENST00000568357 R3HDM1Q15032 1099 aaKnown RBP21.1■□□□□ 0.97
VPS39-210ENST00000568357 TTC21AQ8NDW8 1320 aa21.09■□□□□ 0.97
VPS39-210ENST00000568357 TMF1P82094 1093 aa21.09■□□□□ 0.97
VPS39-210ENST00000568357 HDGFL2Q7Z4V5 671 aaPredicted RBP21.09■□□□□ 0.97
VPS39-210ENST00000568357 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.09■□□□□ 0.97
VPS39-210ENST00000568357 COL14A1Q05707 1796 aaKnown RBP21.08■□□□□ 0.97
VPS39-210ENST00000568357 TERF2IPQ9NYB0 399 aa21.08■□□□□ 0.97
VPS39-210ENST00000568357 CPDO75976 1380 aa21.08■□□□□ 0.96
VPS39-210ENST00000568357 PHRF1Q9P1Y6 1649 aaKnown RBP21.07■□□□□ 0.96
VPS39-210ENST00000568357 A0A0G2JS52 829 aa21.07■□□□□ 0.96
VPS39-210ENST00000568357 MYT1Q01538 1121 aa21.07■□□□□ 0.96
VPS39-210ENST00000568357 A0A1W2PP64 1363 aa21.06■□□□□ 0.96
VPS39-210ENST00000568357 NRKQ7Z2Y5 1582 aa21.06■□□□□ 0.96
VPS39-210ENST00000568357 AKAP12Q02952 1782 aa21.05■□□□□ 0.96
VPS39-210ENST00000568357 NME9Q86XW9 330 aa21.05■□□□□ 0.96
VPS39-210ENST00000568357 STRN4Q9NRL3 753 aa21.05■□□□□ 0.96
VPS39-210ENST00000568357 PIK3C2AO00443 1686 aa21.05■□□□□ 0.96
VPS39-210ENST00000568357 SPATA31A5Q5VU36 1347 aa21.04■□□□□ 0.96
VPS39-210ENST00000568357 SPATA31A7Q8IWB4 1347 aa21.04■□□□□ 0.96
VPS39-210ENST00000568357 ZBTB7CA1YPR0 619 aa21.03■□□□□ 0.96
VPS39-210ENST00000568357 YY1P25490 414 aa21.03■□□□□ 0.96
VPS39-210ENST00000568357 EVA1CP58658 441 aa21.03■□□□□ 0.96
VPS39-210ENST00000568357 FAM98CQ17RN3 349 aaKnown RBP21.03■□□□□ 0.96
VPS39-210ENST00000568357 FAM182BQ5T319 152 aa21.03■□□□□ 0.96
VPS39-210ENST00000568357 SLIT3O75094 1523 aa21.03■□□□□ 0.96
VPS39-210ENST00000568357 DISP2A7MBM2 1401 aa21.03■□□□□ 0.96
VPS39-210ENST00000568357 THSD7AQ9UPZ6 1657 aa21.02■□□□□ 0.96
VPS39-210ENST00000568357 NINLQ9Y2I6 1382 aa21.02■□□□□ 0.96
VPS39-210ENST00000568357 SOX12O15370 315 aa21.02■□□□□ 0.96
VPS39-210ENST00000568357 CAMTA1Q9Y6Y1 1673 aa21.02■□□□□ 0.95
VPS39-210ENST00000568357 USP31Q70CQ4 1352 aa21.01■□□□□ 0.95
VPS39-210ENST00000568357 KCNH5Q8NCM2 988 aa21.01■□□□□ 0.95
VPS39-210ENST00000568357 CDCA8Q53HL2 280 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 131.7 ms