RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 GOLGA2Q08379 1002 aa17.23■□□□□ 0.35
VPS4A-204ENST00000566354 C20orf194Q5TEA3 1177 aa17.23■□□□□ 0.35
VPS4A-204ENST00000566354 PKNOX2Q96KN3 472 aa17.23■□□□□ 0.35
VPS4A-204ENST00000566354 NPC1L1Q9UHC9 1359 aa17.23■□□□□ 0.35
VPS4A-204ENST00000566354 CENPQQ7L2Z9 268 aaPredicted RBP17.22■□□□□ 0.35
VPS4A-204ENST00000566354 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.22■□□□□ 0.35
VPS4A-204ENST00000566354 PUS7Q96PZ0 661 aaKnown RBP17.22■□□□□ 0.35
VPS4A-204ENST00000566354 PTCH1Q13635 1447 aa17.22■□□□□ 0.35
VPS4A-204ENST00000566354 WASLO00401 505 aaPredicted RBP17.21■□□□□ 0.35
VPS4A-204ENST00000566354 CARD14Q9BXL6 1004 aa17.2■□□□□ 0.34
VPS4A-204ENST00000566354 NEFMP07197 916 aa17.19■□□□□ 0.34
VPS4A-204ENST00000566354 ATAD2Q6PL18 1390 aa17.19■□□□□ 0.34
VPS4A-204ENST00000566354 LAS1LQ9Y4W2 734 aaKnown RBP17.19■□□□□ 0.34
VPS4A-204ENST00000566354 SLFN5Q08AF3 891 aa17.18■□□□□ 0.34
VPS4A-204ENST00000566354 RBM33Q96EV2 1170 aaKnown RBP17.18■□□□□ 0.34
VPS4A-204ENST00000566354 SKAP1Q86WV1 359 aa17.17■□□□□ 0.34
VPS4A-204ENST00000566354 TRMT2AQ8IZ69 625 aaKnown RBP17.16■□□□□ 0.34
VPS4A-204ENST00000566354 ADGRB2O60241 1585 aa17.16■□□□□ 0.34
VPS4A-204ENST00000566354 STRCQ7RTU9 1775 aa17.16■□□□□ 0.34
VPS4A-204ENST00000566354 PODXL2Q9NZ53 605 aa17.15■□□□□ 0.34
VPS4A-204ENST00000566354 CABP1Q9NZU7 370 aa17.15■□□□□ 0.34
VPS4A-204ENST00000566354 NUTM2FA1L443 756 aa17.15■□□□□ 0.34
VPS4A-204ENST00000566354 ANKRD36BQ8N2N9 1353 aa17.14■□□□□ 0.33
VPS4A-204ENST00000566354 PRR36Q9H6K5 1346 aa17.14■□□□□ 0.33
VPS4A-204ENST00000566354 NSD3Q9BZ95 1437 aa17.14■□□□□ 0.33
VPS4A-204ENST00000566354 FAM161AQ3B820 660 aa17.14■□□□□ 0.33
VPS4A-204ENST00000566354 NUDT16Q96DE0 195 aaKnown RBP17.14■□□□□ 0.33
VPS4A-204ENST00000566354 NGEFQ8N5V2 710 aa17.13■□□□□ 0.33
VPS4A-204ENST00000566354 A0A1W2PP64 1363 aa17.13■□□□□ 0.33
VPS4A-204ENST00000566354 NINLQ9Y2I6 1382 aa17.13■□□□□ 0.33
VPS4A-204ENST00000566354 CD163L1Q9NR16 1453 aa17.13■□□□□ 0.33
VPS4A-204ENST00000566354 ATP7BP35670 1465 aa17.12■□□□□ 0.33
VPS4A-204ENST00000566354 NWD1Q149M9 1564 aa17.12■□□□□ 0.33
VPS4A-204ENST00000566354 NKTRP30414 1462 aaKnown RBP17.11■□□□□ 0.33
VPS4A-204ENST00000566354 PPIP5K1Q6PFW1 1433 aa17.11■□□□□ 0.33
VPS4A-204ENST00000566354 NALCNQ8IZF0 1738 aa17.1■□□□□ 0.33
VPS4A-204ENST00000566354 CCDC61Q9Y6R9 512 aa17.1■□□□□ 0.33
VPS4A-204ENST00000566354 E9PSI1 815 aa17.09■□□□□ 0.33
VPS4A-204ENST00000566354 APAF1O14727 1248 aa17.09■□□□□ 0.33
VPS4A-204ENST00000566354 C8orf34Q49A92 452 aa17.09■□□□□ 0.33
VPS4A-204ENST00000566354 CCDC146Q8IYE0 955 aa17.09■□□□□ 0.33
VPS4A-204ENST00000566354 TERF2IPQ9NYB0 399 aa17.09■□□□□ 0.33
VPS4A-204ENST00000566354 STRCP1A6NGW2 1772 aa17.09■□□□□ 0.33
VPS4A-204ENST00000566354 USP32Q8NFA0 1604 aa17.08■□□□□ 0.33
VPS4A-204ENST00000566354 RGPD8O14715 1765 aaPredicted RBP17.08■□□□□ 0.32
VPS4A-204ENST00000566354 HDGFL2Q7Z4V5 671 aaPredicted RBP17.07■□□□□ 0.32
VPS4A-204ENST00000566354 PROSER2Q86WR7 435 aaPredicted RBP17.07■□□□□ 0.32
VPS4A-204ENST00000566354 TOPAZ1Q8N9V7 1692 aa17.06■□□□□ 0.32
VPS4A-204ENST00000566354 SPINK5Q9NQ38 1064 aaPredicted RBP17.06■□□□□ 0.32
VPS4A-204ENST00000566354 ADGRL3Q9HAR2 1447 aa17.05■□□□□ 0.32
VPS4A-204ENST00000566354 CGNL1Q0VF96 1302 aa17.05■□□□□ 0.32
VPS4A-204ENST00000566354 C14orf37Q86TY3 774 aa17.05■□□□□ 0.32
VPS4A-204ENST00000566354 CPSF1Q10570 1443 aaKnown RBP17.05■□□□□ 0.32
VPS4A-204ENST00000566354 FMN2Q9NZ56 1722 aa17.04■□□□□ 0.32
VPS4A-204ENST00000566354 CDC42BPGQ6DT37 1551 aa17.04■□□□□ 0.32
VPS4A-204ENST00000566354 BCAR3O75815 825 aa17.03■□□□□ 0.32
VPS4A-204ENST00000566354 PDE3AQ14432 1141 aa17.03■□□□□ 0.32
VPS4A-204ENST00000566354 PLEKHG5O94827 1062 aa17.03■□□□□ 0.32
VPS4A-204ENST00000566354 NFKBIBQ15653 356 aa17.03■□□□□ 0.32
VPS4A-204ENST00000566354 RGS3P49796 1198 aa17.02■□□□□ 0.32
VPS4A-204ENST00000566354 PMFBP1Q8TBY8 1022 aa17.02■□□□□ 0.32
VPS4A-204ENST00000566354 ITSN1Q15811 1721 aa17.02■□□□□ 0.32
VPS4A-204ENST00000566354 POLR3AO14802 1390 aaPredicted RBP17.02■□□□□ 0.32
VPS4A-204ENST00000566354 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.02■□□□□ 0.31
VPS4A-204ENST00000566354 AKAP12Q02952 1782 aa17.01■□□□□ 0.31
VPS4A-204ENST00000566354 ACEP12821 1306 aa17.01■□□□□ 0.31
VPS4A-204ENST00000566354 PLEKHG3A1L390 1219 aa17.01■□□□□ 0.31
VPS4A-204ENST00000566354 GGNBP2Q9H3C7 697 aa17.01■□□□□ 0.31
VPS4A-204ENST00000566354 TMEM94Q12767 1356 aa17.01■□□□□ 0.31
VPS4A-204ENST00000566354 ZNF335Q9H4Z2 1342 aaPredicted RBP17.01■□□□□ 0.31
VPS4A-204ENST00000566354 FYB1O15117 783 aa17.01■□□□□ 0.31
VPS4A-204ENST00000566354 SLC4A3P48751 1232 aa17.01■□□□□ 0.31
VPS4A-204ENST00000566354 MON2Q7Z3U7 1717 aa17■□□□□ 0.31
VPS4A-204ENST00000566354 ANKARQ7Z5J8 1434 aa17■□□□□ 0.31
VPS4A-204ENST00000566354 TNNT2P45379 298 aaPredicted RBP17■□□□□ 0.31
VPS4A-204ENST00000566354 MORC1Q86VD1 984 aa17■□□□□ 0.31
VPS4A-204ENST00000566354 GSE1Q14687 1217 aa16.99■□□□□ 0.31
VPS4A-204ENST00000566354 WWC1Q8IX03 1113 aa16.98■□□□□ 0.31
VPS4A-204ENST00000566354 EDC4Q6P2E9 1401 aaKnown RBP16.98■□□□□ 0.31
VPS4A-204ENST00000566354 NSD2O96028 1365 aa16.98■□□□□ 0.31
VPS4A-204ENST00000566354 DMRT2Q9Y5R5 561 aa16.98■□□□□ 0.31
VPS4A-204ENST00000566354 KIF20BQ96Q89 1820 aa16.98■□□□□ 0.31
VPS4A-204ENST00000566354 ZNF692Q9BU19 519 aaPredicted RBP16.97■□□□□ 0.31
VPS4A-204ENST00000566354 C19orf44Q9H6X5 657 aa16.97■□□□□ 0.31
VPS4A-204ENST00000566354 IGHDP01880 384 aa16.96■□□□□ 0.31
VPS4A-204ENST00000566354 CLUAP1Q96AJ1 413 aa16.96■□□□□ 0.31
VPS4A-204ENST00000566354 AAMPQ13685 434 aa16.96■□□□□ 0.3
VPS4A-204ENST00000566354 NME9Q86XW9 330 aa16.96■□□□□ 0.3
VPS4A-204ENST00000566354 NGDNQ8NEJ9 315 aaKnown RBP16.96■□□□□ 0.3
VPS4A-204ENST00000566354 MAPK8IP3Q9UPT6 1336 aa16.95■□□□□ 0.3
VPS4A-204ENST00000566354 XIRP1Q702N8 1843 aaKnown RBP16.95■□□□□ 0.3
VPS4A-204ENST00000566354 USP6P35125 1406 aa16.95■□□□□ 0.3
VPS4A-204ENST00000566354 ANKRD26Q9UPS8 1709 aa16.95■□□□□ 0.3
VPS4A-204ENST00000566354 IL27Q8NEV9 243 aa16.95■□□□□ 0.3
VPS4A-204ENST00000566354 ZRANB1Q9UGI0 708 aa16.95■□□□□ 0.3
VPS4A-204ENST00000566354 NRKQ7Z2Y5 1582 aa16.94■□□□□ 0.3
VPS4A-204ENST00000566354 CANXP27824 592 aaKnown RBP16.94■□□□□ 0.3
VPS4A-204ENST00000566354 ESCO1Q5FWF5 840 aa16.93■□□□□ 0.3
VPS4A-204ENST00000566354 VIRMAQ69YN4 1812 aaKnown RBP16.93■□□□□ 0.3
VPS4A-204ENST00000566354 RUNDC1Q96C34 613 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms