RNA–Protein interactions for RNA: ENST00000565815.1

LINC00561-201, long intergenic non-protein coding RNA 561, humanhuman

BASIC

Gene LINC00561, Length 2,738 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00561-201ENST00000565815 HDGFL1Q5TGJ6 251 aa7.66□□□□□ -1.18
LINC00561-201ENST00000565815 CALR3Q96L12 384 aaKnown RBP7.66□□□□□ -1.18
LINC00561-201ENST00000565815 JUNDP17535 347 aa7.65□□□□□ -1.18
LINC00561-201ENST00000565815 SCRIBQ14160 1630 aa7.65□□□□□ -1.18
LINC00561-201ENST00000565815 PIK3CDO00329 1044 aa7.65□□□□□ -1.18
LINC00561-201ENST00000565815 CCDC24Q8N4L8 307 aa7.65□□□□□ -1.18
LINC00561-201ENST00000565815 ARXQ96QS3 562 aa7.65□□□□□ -1.18
LINC00561-201ENST00000565815 NUDT12Q9BQG2 462 aa7.65□□□□□ -1.18
LINC00561-201ENST00000565815 PLA2G2CQ5R387 149 aa7.65□□□□□ -1.19
LINC00561-201ENST00000565815 PRR14Q9BWN1 585 aa7.64□□□□□ -1.19
LINC00561-201ENST00000565815 DXOO77932 396 aaKnown RBP7.64□□□□□ -1.19
LINC00561-201ENST00000565815 DESI1Q6ICB0 168 aa7.64□□□□□ -1.19
LINC00561-201ENST00000565815 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.63□□□□□ -1.19
LINC00561-201ENST00000565815 SALL2Q9Y467 1007 aaPredicted RBP7.63□□□□□ -1.19
LINC00561-201ENST00000565815 HOMEZQ8IX15 550 aa7.63□□□□□ -1.19
LINC00561-201ENST00000565815 FCF1Q9Y324 198 aaKnown RBP7.63□□□□□ -1.19
LINC00561-201ENST00000565815 LINC01559Q495D7 138 aa7.62□□□□□ -1.19
LINC00561-201ENST00000565815 SPNS2Q8IVW8 549 aa7.62□□□□□ -1.19
LINC00561-201ENST00000565815 CCNYL3P0C7X3 344 aa7.62□□□□□ -1.19
LINC00561-201ENST00000565815 PTPRNQ16849 979 aa7.62□□□□□ -1.19
LINC00561-201ENST00000565815 FKBPLQ9UIM3 349 aa7.62□□□□□ -1.19
LINC00561-201ENST00000565815 ADH1BP00325 375 aa7.61□□□□□ -1.19
LINC00561-201ENST00000565815 MMP16P51512 607 aa7.61□□□□□ -1.19
LINC00561-201ENST00000565815 MSS51Q4VC12 460 aa7.61□□□□□ -1.19
LINC00561-201ENST00000565815 CARD14Q9BXL6 1004 aa7.61□□□□□ -1.19
LINC00561-201ENST00000565815 CDCA8Q53HL2 280 aa7.6□□□□□ -1.19
LINC00561-201ENST00000565815 UNC93B1Q9H1C4 597 aa7.6□□□□□ -1.19
LINC00561-201ENST00000565815 EVA1BQ9NVM1 165 aa7.6□□□□□ -1.19
LINC00561-201ENST00000565815 C4orf48Q5BLP8 95 aa7.59□□□□□ -1.19
LINC00561-201ENST00000565815 CFAP70Q5T0N1 1121 aa7.59□□□□□ -1.19
LINC00561-201ENST00000565815 NECTIN2Q92692 538 aa7.59□□□□□ -1.19
LINC00561-201ENST00000565815 RNF166Q96A37 237 aaPredicted RBP7.59□□□□□ -1.19
LINC00561-201ENST00000565815 ALG2Q9H553 416 aa7.59□□□□□ -1.19
LINC00561-201ENST00000565815 SOCS7O14512 581 aa7.59□□□□□ -1.19
LINC00561-201ENST00000565815 CCDC97Q96F63 343 aaPredicted RBP7.59□□□□□ -1.19
LINC00561-201ENST00000565815 SLC6A16Q9GZN6 736 aa7.59□□□□□ -1.19
LINC00561-201ENST00000565815 ERCC6Q03468 1493 aa7.59□□□□□ -1.19
LINC00561-201ENST00000565815 MAGEB6P1A0A0J9YX57 407 aa7.58□□□□□ -1.2
LINC00561-201ENST00000565815 TSGA10IPQ3SY00 556 aa7.58□□□□□ -1.2
LINC00561-201ENST00000565815 TBC1D9Q6ZT07 1266 aa7.58□□□□□ -1.2
LINC00561-201ENST00000565815 DEPDC4Q8N2C3 294 aa7.58□□□□□ -1.2
LINC00561-201ENST00000565815 IL21Q9HBE4 155 aa7.58□□□□□ -1.2
LINC00561-201ENST00000565815 KCNH2Q12809 1159 aa7.57□□□□□ -1.2
LINC00561-201ENST00000565815 FAM174AQ8TBP5 190 aa7.57□□□□□ -1.2
LINC00561-201ENST00000565815 FOXJ1Q92949 421 aa7.57□□□□□ -1.2
LINC00561-201ENST00000565815 BAP1Q92560 729 aa7.57□□□□□ -1.2
LINC00561-201ENST00000565815 PALM3A6NDB9 673 aaPredicted RBP7.56□□□□□ -1.2
LINC00561-201ENST00000565815 RETREG2Q8NC44 543 aa7.56□□□□□ -1.2
LINC00561-201ENST00000565815 TFIP11Q9UBB9 837 aaKnown RBP7.56□□□□□ -1.2
LINC00561-201ENST00000565815 RNF223E7ERA6 249 aa7.56□□□□□ -1.2
LINC00561-201ENST00000565815 EMID1Q96A84 441 aaPredicted RBP7.55□□□□□ -1.2
LINC00561-201ENST00000565815 NCAPD3P42695 1498 aa7.55□□□□□ -1.2
LINC00561-201ENST00000565815 ZBBXA8MT70 800 aa7.55□□□□□ -1.2
LINC00561-201ENST00000565815 PPP1R12CQ9BZL4 782 aa7.55□□□□□ -1.2
LINC00561-201ENST00000565815 ADAM32Q8TC27 787 aa7.54□□□□□ -1.2
LINC00561-201ENST00000565815 PRM3Q9NNZ6 103 aa7.54□□□□□ -1.2
LINC00561-201ENST00000565815 SERPINA10Q9UK55 444 aa7.54□□□□□ -1.2
LINC00561-201ENST00000565815 LMOD1P29536 600 aaPredicted RBP7.53□□□□□ -1.2
LINC00561-201ENST00000565815 TRIM26Q12899 539 aaPredicted RBP7.53□□□□□ -1.2
LINC00561-201ENST00000565815 NR1H3Q13133 447 aa7.53□□□□□ -1.2
LINC00561-201ENST00000565815 WASHC4Q2M389 1173 aa7.52□□□□□ -1.21
LINC00561-201ENST00000565815 PPP1R18Q6NYC8 613 aa7.52□□□□□ -1.21
LINC00561-201ENST00000565815 NYAP1Q6ZVC0 841 aa7.52□□□□□ -1.21
LINC00561-201ENST00000565815 SKOR1P84550 965 aa7.51□□□□□ -1.21
LINC00561-201ENST00000565815 SEMA3FQ13275 785 aa7.51□□□□□ -1.21
LINC00561-201ENST00000565815 SH3BP5LQ7L8J4 393 aa7.51□□□□□ -1.21
LINC00561-201ENST00000565815 PCDHB9Q9Y5E1 797 aa7.51□□□□□ -1.21
LINC00561-201ENST00000565815 MAFBQ9Y5Q3 323 aaPredicted RBP7.51□□□□□ -1.21
LINC00561-201ENST00000565815 SH3BP2P78314 561 aa7.5□□□□□ -1.21
LINC00561-201ENST00000565815 SRPK2P78362 688 aaKnown RBP7.5□□□□□ -1.21
LINC00561-201ENST00000565815 SH3RF1Q7Z6J0 888 aa7.5□□□□□ -1.21
LINC00561-201ENST00000565815 RAB15P59190 212 aa7.5□□□□□ -1.21
LINC00561-201ENST00000565815 MMRN1Q13201 1228 aa7.5□□□□□ -1.21
LINC00561-201ENST00000565815 ZNF511Q8NB15 262 aa7.5□□□□□ -1.21
LINC00561-201ENST00000565815 WWC1Q8IX03 1113 aa7.5□□□□□ -1.21
LINC00561-201ENST00000565815 LGR5O75473 907 aa7.49□□□□□ -1.21
LINC00561-201ENST00000565815 AGERQ15109 404 aa7.49□□□□□ -1.21
LINC00561-201ENST00000565815 ARHGAP9Q9BRR9 750 aa7.49□□□□□ -1.21
LINC00561-201ENST00000565815 HMGXB3Q12766 1538 aa7.49□□□□□ -1.21
LINC00561-201ENST00000565815 ITGBL1O95965 494 aaPredicted RBP7.49□□□□□ -1.21
LINC00561-201ENST00000565815 KCNC4Q03721 635 aa7.48□□□□□ -1.21
LINC00561-201ENST00000565815 ERFEQ4G0M1 354 aa7.48□□□□□ -1.21
LINC00561-201ENST00000565815 SMARCA2P51531 1590 aa7.47□□□□□ -1.21
LINC00561-201ENST00000565815 STAU1O95793 577 aaKnown RBP7.47□□□□□ -1.21
LINC00561-201ENST00000565815 TRIM32Q13049 653 aa7.47□□□□□ -1.21
LINC00561-201ENST00000565815 NCOA4Q13772 614 aa7.47□□□□□ -1.21
LINC00561-201ENST00000565815 CDCA7Q9BWT1 371 aaPredicted RBP7.47□□□□□ -1.21
LINC00561-201ENST00000565815 HCSTQ9UBK5 93 aa7.47□□□□□ -1.21
LINC00561-201ENST00000565815 CEP126Q9P2H0 1117 aa7.47□□□□□ -1.21
LINC00561-201ENST00000565815 TLL2Q9Y6L7 1015 aa7.47□□□□□ -1.21
LINC00561-201ENST00000565815 SKIP12755 728 aa7.46□□□□□ -1.21
LINC00561-201ENST00000565815 SCNN1AP37088 669 aa7.46□□□□□ -1.21
LINC00561-201ENST00000565815 EIF4G2P78344 907 aaKnown RBP eCLIP7.46□□□□□ -1.21
LINC00561-201ENST00000565815 PDXDC2PQ6P474 469 aa7.46□□□□□ -1.21
LINC00561-201ENST00000565815 STK32AQ8WU08 396 aa7.46□□□□□ -1.21
LINC00561-201ENST00000565815 GIGYF1O75420 1035 aaPredicted RBP7.46□□□□□ -1.22
LINC00561-201ENST00000565815 CRTC2Q53ET0 693 aaPredicted RBP7.46□□□□□ -1.22
LINC00561-201ENST00000565815 ZBTB33Q86T24 672 aa7.46□□□□□ -1.22
LINC00561-201ENST00000565815 CCDC85AQ96PX6 553 aaPredicted RBP7.46□□□□□ -1.22
LINC00561-201ENST00000565815 USP17L3A6NCW0 530 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms