RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 GJD4Q96KN9 370 aaPredicted RBP9.03□□□□□ -0.96
LINC00560-201ENST00000564593 HMX1Q9NP08 348 aaPredicted RBP9.03□□□□□ -0.96
LINC00560-201ENST00000564593 ZNF330Q9Y3S2 320 aaPredicted RBP9.03□□□□□ -0.96
LINC00560-201ENST00000564593 FAM187AA6NFU0 413 aa9.02□□□□□ -0.97
LINC00560-201ENST00000564593 LCE2AQ5TA79 106 aaPredicted RBP9.02□□□□□ -0.97
LINC00560-201ENST00000564593 ZNF697Q5TEC3 545 aa9.02□□□□□ -0.97
LINC00560-201ENST00000564593 RNF19BQ6ZMZ0 732 aa9.02□□□□□ -0.97
LINC00560-201ENST00000564593 NDUFB9Q9Y6M9 179 aa9.02□□□□□ -0.97
LINC00560-201ENST00000564593 BRICD5Q6PL45 260 aa9.01□□□□□ -0.97
LINC00560-201ENST00000564593 LIAT1Q6ZQX7 453 aa9.01□□□□□ -0.97
LINC00560-201ENST00000564593 HOMEZQ8IX15 550 aa9.01□□□□□ -0.97
LINC00560-201ENST00000564593 USB1Q9BQ65 265 aaKnown RBP9.01□□□□□ -0.97
LINC00560-201ENST00000564593 SALL2Q9Y467 1007 aaPredicted RBP9.01□□□□□ -0.97
LINC00560-201ENST00000564593 GDF9O60383 454 aa9□□□□□ -0.97
LINC00560-201ENST00000564593 FMNL1O95466 1100 aaPredicted RBP9□□□□□ -0.97
LINC00560-201ENST00000564593 TLL1O43897 1013 aa8.99□□□□□ -0.97
LINC00560-201ENST00000564593 DESI1Q6ICB0 168 aa8.99□□□□□ -0.97
LINC00560-201ENST00000564593 TRIM34Q9BYJ4 488 aa8.99□□□□□ -0.97
LINC00560-201ENST00000564593 PER1O15534 1290 aaPredicted RBP8.99□□□□□ -0.97
LINC00560-201ENST00000564593 PPEF1O14829 653 aaPredicted RBP8.98□□□□□ -0.97
LINC00560-201ENST00000564593 S1PR4O95977 384 aa8.98□□□□□ -0.97
LINC00560-201ENST00000564593 THAP11Q96EK4 314 aa8.98□□□□□ -0.97
LINC00560-201ENST00000564593 TNFRSF10AO00220 468 aa8.97□□□□□ -0.97
LINC00560-201ENST00000564593 CCDC82Q8N4S0 544 aa8.97□□□□□ -0.97
LINC00560-201ENST00000564593 EPS8L1Q8TE68 723 aa8.97□□□□□ -0.97
LINC00560-201ENST00000564593 AAASQ9NRG9 546 aa8.97□□□□□ -0.97
LINC00560-201ENST00000564593 NR6A1Q15406 480 aa8.96□□□□□ -0.97
LINC00560-201ENST00000564593 LYPD8Q6UX82 237 aa8.96□□□□□ -0.97
LINC00560-201ENST00000564593 ST8SIA5O15466 376 aa8.95□□□□□ -0.98
LINC00560-201ENST00000564593 ADH1BP00325 375 aa8.94□□□□□ -0.98
LINC00560-201ENST00000564593 IRF5Q13568 498 aa8.94□□□□□ -0.98
LINC00560-201ENST00000564593 SPSB2Q99619 263 aa8.94□□□□□ -0.98
LINC00560-201ENST00000564593 JUNDP17535 347 aa8.93□□□□□ -0.98
LINC00560-201ENST00000564593 WASHC4Q2M389 1173 aa8.93□□□□□ -0.98
LINC00560-201ENST00000564593 CCDC97Q96F63 343 aaPredicted RBP8.93□□□□□ -0.98
LINC00560-201ENST00000564593 POM121CA8CG34 1229 aa8.92□□□□□ -0.98
LINC00560-201ENST00000564593 GPR37L1O60883 481 aa8.92□□□□□ -0.98
LINC00560-201ENST00000564593 SERPINA10Q9UK55 444 aa8.92□□□□□ -0.98
LINC00560-201ENST00000564593 CRIPAKQ8N1N5 446 aa8.91□□□□□ -0.98
LINC00560-201ENST00000564593 FAM160A2Q8N612 972 aaPredicted RBP8.91□□□□□ -0.98
LINC00560-201ENST00000564593 PNMA1Q8ND90 353 aa8.91□□□□□ -0.98
LINC00560-201ENST00000564593 CALR3Q96L12 384 aaKnown RBP8.91□□□□□ -0.98
LINC00560-201ENST00000564593 PTPRNQ16849 979 aa8.9□□□□□ -0.98
LINC00560-201ENST00000564593 MSS51Q4VC12 460 aa8.9□□□□□ -0.98
LINC00560-201ENST00000564593 VAC14Q08AM6 782 aa8.9□□□□□ -0.99
LINC00560-201ENST00000564593 PLA2G2CQ5R387 149 aa8.9□□□□□ -0.99
LINC00560-201ENST00000564593 SLC6A16Q9GZN6 736 aa8.9□□□□□ -0.99
LINC00560-201ENST00000564593 GLMNQ92990 594 aa8.89□□□□□ -0.99
LINC00560-201ENST00000564593 PKD2L1Q9P0L9 805 aa8.89□□□□□ -0.99
LINC00560-201ENST00000564593 WFS1O76024 890 aa8.88□□□□□ -0.99
LINC00560-201ENST00000564593 F12P00748 615 aaPredicted RBP8.88□□□□□ -0.99
LINC00560-201ENST00000564593 CTHP32929 405 aa8.88□□□□□ -0.99
LINC00560-201ENST00000564593 MAP10Q9P2G4 905 aa8.88□□□□□ -0.99
LINC00560-201ENST00000564593 DXOO77932 396 aaKnown RBP8.87□□□□□ -0.99
LINC00560-201ENST00000564593 HDGFL1Q5TGJ6 251 aa8.87□□□□□ -0.99
LINC00560-201ENST00000564593 PRDM9Q9NQV7 894 aa8.87□□□□□ -0.99
LINC00560-201ENST00000564593 CCNYL3P0C7X3 344 aa8.86□□□□□ -0.99
LINC00560-201ENST00000564593 MMP16P51512 607 aa8.86□□□□□ -0.99
LINC00560-201ENST00000564593 NUDT12Q9BQG2 462 aa8.86□□□□□ -0.99
LINC00560-201ENST00000564593 STK17AQ9UEE5 414 aa8.86□□□□□ -0.99
LINC00560-201ENST00000564593 AVPP01185 164 aa8.86□□□□□ -0.99
LINC00560-201ENST00000564593 FOXC1Q12948 553 aa8.86□□□□□ -0.99
LINC00560-201ENST00000564593 EVA1BQ9NVM1 165 aa8.86□□□□□ -0.99
LINC00560-201ENST00000564593 FKBPLQ9UIM3 349 aa8.86□□□□□ -0.99
LINC00560-201ENST00000564593 DACH1Q9UI36 760 aa8.85□□□□□ -0.99
LINC00560-201ENST00000564593 ADAMTS19Q8TE59 1207 aa8.84□□□□□ -0.99
LINC00560-201ENST00000564593 LOC100996750A0A140TA64 210 aa8.83□□□□□ -1
LINC00560-201ENST00000564593 WIPF1O43516 503 aa8.83□□□□□ -1
LINC00560-201ENST00000564593 KCNH2Q12809 1159 aa8.83□□□□□ -1
LINC00560-201ENST00000564593 KRTAP4-6Q9BYQ5 205 aa8.83□□□□□ -1
LINC00560-201ENST00000564593 TOR4AQ9NXH8 423 aa8.83□□□□□ -1
LINC00560-201ENST00000564593 GMPR2Q9P2T1 348 aaKnown RBP8.83□□□□□ -1
LINC00560-201ENST00000564593 C11orf95C9JLR9 678 aaPredicted RBP8.82□□□□□ -1
LINC00560-201ENST00000564593 AXIN1O15169 862 aa8.82□□□□□ -1
LINC00560-201ENST00000564593 RPIAP49247 311 aa8.82□□□□□ -1
LINC00560-201ENST00000564593 NFX1Q12986 1120 aaKnown RBP8.82□□□□□ -1
LINC00560-201ENST00000564593 CTC1Q2NKJ3 1217 aa8.82□□□□□ -1
LINC00560-201ENST00000564593 CCDC24Q8N4L8 307 aa8.82□□□□□ -1
LINC00560-201ENST00000564593 ZC3H4Q9UPT8 1303 aaKnown RBP8.82□□□□□ -1
LINC00560-201ENST00000564593 SOX11P35716 441 aa8.82□□□□□ -1
LINC00560-201ENST00000564593 ARMC2Q8NEN0 867 aa8.82□□□□□ -1
LINC00560-201ENST00000564593 ALG2Q9H553 416 aa8.82□□□□□ -1
LINC00560-201ENST00000564593 ZBBXA8MT70 800 aa8.81□□□□□ -1
LINC00560-201ENST00000564593 EIF4G2P78344 907 aaKnown RBP eCLIP8.81□□□□□ -1
LINC00560-201ENST00000564593 INSM1Q01101 510 aaPredicted RBP8.81□□□□□ -1
LINC00560-201ENST00000564593 NR1H3Q13133 447 aa8.81□□□□□ -1
LINC00560-201ENST00000564593 SEMA3FQ13275 785 aa8.81□□□□□ -1
LINC00560-201ENST00000564593 FBXO45P0C2W1 286 aa8.8□□□□□ -1
LINC00560-201ENST00000564593 SMCPP49901 116 aaPredicted RBP8.8□□□□□ -1
LINC00560-201ENST00000564593 CYP4X1Q8N118 509 aa8.79□□□□□ -1
LINC00560-201ENST00000564593 CD2BP2O95400 341 aaKnown RBP8.78□□□□□ -1
LINC00560-201ENST00000564593 NBPF14Q5TI25 921 aa8.78□□□□□ -1
LINC00560-201ENST00000564593 PDXDC2PQ6P474 469 aa8.78□□□□□ -1
LINC00560-201ENST00000564593 GPKOWQ92917 476 aaPredicted RBP eCLIP8.78□□□□□ -1
LINC00560-201ENST00000564593 UNC93B1Q9H1C4 597 aa8.78□□□□□ -1
LINC00560-201ENST00000564593 PTK2Q05397 1052 aa8.77□□□□□ -1.01
LINC00560-201ENST00000564593 PTCRAQ6ISU1 281 aaPredicted RBP8.77□□□□□ -1.01
LINC00560-201ENST00000564593 PPP1R12CQ9BZL4 782 aa8.76□□□□□ -1.01
LINC00560-201ENST00000564593 GPSM3Q9Y4H4 160 aa8.76□□□□□ -1.01
LINC00560-201ENST00000564593 RFX1P22670 979 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms