RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 DCAF11Q8TEB1 546 aa20.38■□□□□ 0.85
LDLR-213ENST00000560502 ATP7BP35670 1465 aa20.37■□□□□ 0.85
LDLR-213ENST00000560502 KDM2AQ9Y2K7 1162 aa20.37■□□□□ 0.85
LDLR-213ENST00000560502 TOPAZ1Q8N9V7 1692 aa20.36■□□□□ 0.85
LDLR-213ENST00000560502 DEFB132Q7Z7B7 95 aa20.35■□□□□ 0.85
LDLR-213ENST00000560502 CCDC9Q9Y3X0 531 aaKnown RBP20.35■□□□□ 0.85
LDLR-213ENST00000560502 KIAA1210Q9ULL0 1709 aa20.35■□□□□ 0.85
LDLR-213ENST00000560502 THSD7AQ9UPZ6 1657 aa20.35■□□□□ 0.85
LDLR-213ENST00000560502 PHRF1Q9P1Y6 1649 aaKnown RBP20.35■□□□□ 0.85
LDLR-213ENST00000560502 KRT27Q7Z3Y8 459 aa20.34■□□□□ 0.85
LDLR-213ENST00000560502 BTG4Q9NY30 223 aa20.33■□□□□ 0.85
LDLR-213ENST00000560502 RGPD1P0DJD0 1748 aa20.31■□□□□ 0.84
LDLR-213ENST00000560502 NGDNQ8NEJ9 315 aaKnown RBP20.3■□□□□ 0.84
LDLR-213ENST00000560502 LRP5O75197 1615 aa20.3■□□□□ 0.84
LDLR-213ENST00000560502 SPATA31A5Q5VU36 1347 aa20.29■□□□□ 0.84
LDLR-213ENST00000560502 SPATA31A7Q8IWB4 1347 aa20.29■□□□□ 0.84
LDLR-213ENST00000560502 SF3B2Q13435 895 aaKnown RBP20.29■□□□□ 0.84
LDLR-213ENST00000560502 FAM98CQ17RN3 349 aaKnown RBP20.29■□□□□ 0.84
LDLR-213ENST00000560502 TNS1Q9HBL0 1735 aaKnown RBP20.28■□□□□ 0.84
LDLR-213ENST00000560502 NUDT16Q96DE0 195 aaKnown RBP20.28■□□□□ 0.84
LDLR-213ENST00000560502 POLR3AO14802 1390 aaPredicted RBP20.27■□□□□ 0.84
LDLR-213ENST00000560502 CCER1Q8TC90 406 aaPredicted RBP20.27■□□□□ 0.84
LDLR-213ENST00000560502 CLSPNQ9HAW4 1339 aa20.27■□□□□ 0.83
LDLR-213ENST00000560502 KIAA0232Q92628 1395 aa20.25■□□□□ 0.83
LDLR-213ENST00000560502 A0A0G2JS52 829 aa20.25■□□□□ 0.83
LDLR-213ENST00000560502 PAK3O75914 559 aaPredicted RBP20.25■□□□□ 0.83
LDLR-213ENST00000560502 MYT1Q01538 1121 aa20.25■□□□□ 0.83
LDLR-213ENST00000560502 PRDM11Q9NQV5 511 aa20.25■□□□□ 0.83
LDLR-213ENST00000560502 NRKQ7Z2Y5 1582 aa20.25■□□□□ 0.83
LDLR-213ENST00000560502 DISP2A7MBM2 1401 aa20.23■□□□□ 0.83
LDLR-213ENST00000560502 CDK19Q9BWU1 502 aa20.23■□□□□ 0.83
LDLR-213ENST00000560502 BAG6P46379 1132 aa20.22■□□□□ 0.83
LDLR-213ENST00000560502 LMO7Q8WWI1 1683 aa20.22■□□□□ 0.83
LDLR-213ENST00000560502 SPATA31A1Q5TZJ5 1347 aa20.22■□□□□ 0.83
LDLR-213ENST00000560502 PLEKHG3A1L390 1219 aa20.2■□□□□ 0.82
LDLR-213ENST00000560502 ACEP12821 1306 aa20.2■□□□□ 0.82
LDLR-213ENST00000560502 CCDC61Q9Y6R9 512 aa20.19■□□□□ 0.82
LDLR-213ENST00000560502 CHRNA2Q15822 529 aa20.18■□□□□ 0.82
LDLR-213ENST00000560502 NBPF8Q3BBV2 869 aa20.18■□□□□ 0.82
LDLR-213ENST00000560502 FAM182BQ5T319 152 aa20.18■□□□□ 0.82
LDLR-213ENST00000560502 SSH2Q76I76 1423 aa20.18■□□□□ 0.82
LDLR-213ENST00000560502 QRICH2Q9H0J4 1663 aa20.17■□□□□ 0.82
LDLR-213ENST00000560502 CAMTA1Q9Y6Y1 1673 aa20.17■□□□□ 0.82
LDLR-213ENST00000560502 NBPF1Q3BBV0 1214 aa20.17■□□□□ 0.82
LDLR-213ENST00000560502 USP19O94966 1318 aa20.17■□□□□ 0.82
LDLR-213ENST00000560502 CPDO75976 1380 aa20.16■□□□□ 0.82
LDLR-213ENST00000560502 ZC3H6P61129 1189 aaKnown RBP20.15■□□□□ 0.82
LDLR-213ENST00000560502 EN1Q05925 392 aaPredicted RBP20.15■□□□□ 0.82
LDLR-213ENST00000560502 NUTM2GQ5VZR2 741 aa20.15■□□□□ 0.82
LDLR-213ENST00000560502 PSDA5PKW4 1024 aaPredicted RBP20.14■□□□□ 0.81
LDLR-213ENST00000560502 STRN4Q9NRL3 753 aa20.14■□□□□ 0.81
LDLR-213ENST00000560502 PPIP5K1Q6PFW1 1433 aa20.13■□□□□ 0.81
LDLR-213ENST00000560502 RREB1Q92766 1687 aa20.13■□□□□ 0.81
LDLR-213ENST00000560502 BARGINQ6ZT62 677 aa20.12■□□□□ 0.81
LDLR-213ENST00000560502 PARP4Q9UKK3 1724 aaKnown RBP20.11■□□□□ 0.81
LDLR-213ENST00000560502 CENPJQ9HC77 1338 aaPredicted RBP20.11■□□□□ 0.81
LDLR-213ENST00000560502 BRD4O60885 1362 aaPredicted RBP20.1■□□□□ 0.81
LDLR-213ENST00000560502 FAM196AQ6ZSG2 479 aa20.1■□□□□ 0.81
LDLR-213ENST00000560502 ABTB2Q8N961 1025 aa20.1■□□□□ 0.81
LDLR-213ENST00000560502 SLIT3O75094 1523 aa20.09■□□□□ 0.81
LDLR-213ENST00000560502 COL5A2P05997 1499 aaPredicted RBP20.09■□□□□ 0.81
LDLR-213ENST00000560502 NUP188Q5SRE5 1749 aa20.08■□□□□ 0.81
LDLR-213ENST00000560502 LARP1Q6PKG0 1096 aaKnown RBP20.08■□□□□ 0.81
LDLR-213ENST00000560502 CAMKK2Q96RR4 588 aa20.08■□□□□ 0.81
LDLR-213ENST00000560502 TRPM1Q7Z4N2 1603 aa20.08■□□□□ 0.8
LDLR-213ENST00000560502 USP6P35125 1406 aa20.08■□□□□ 0.8
LDLR-213ENST00000560502 PARD3Q8TEW0 1356 aa20.08■□□□□ 0.8
LDLR-213ENST00000560502 PIK3C2AO00443 1686 aa20.07■□□□□ 0.8
LDLR-213ENST00000560502 TRIM37O94972 964 aa20.07■□□□□ 0.8
LDLR-213ENST00000560502 SRPK2P78362 688 aaKnown RBP20.07■□□□□ 0.8
LDLR-213ENST00000560502 EZH2Q15910 746 aaKnown RBP20.07■□□□□ 0.8
LDLR-213ENST00000560502 CABP2Q9NPB3 220 aa20.07■□□□□ 0.8
LDLR-213ENST00000560502 GCP02774 474 aa20.06■□□□□ 0.8
LDLR-213ENST00000560502 EVA1CP58658 441 aa20.06■□□□□ 0.8
LDLR-213ENST00000560502 NLRP13Q86W25 1043 aa20.06■□□□□ 0.8
LDLR-213ENST00000560502 USP35Q9P2H5 1018 aa20.06■□□□□ 0.8
LDLR-213ENST00000560502 COL18A1P39060 1754 aa20.06■□□□□ 0.8
LDLR-213ENST00000560502 PEAK1Q9H792 1746 aa20.05■□□□□ 0.8
LDLR-213ENST00000560502 R3HDM1Q15032 1099 aaKnown RBP20.05■□□□□ 0.8
LDLR-213ENST00000560502 TCP11L2Q8N4U5 519 aa20.05■□□□□ 0.8
LDLR-213ENST00000560502 WNK3Q9BYP7 1800 aa20.04■□□□□ 0.8
LDLR-213ENST00000560502 THRAP3Q9Y2W1 955 aaKnown RBP20.04■□□□□ 0.8
LDLR-213ENST00000560502 AKAP12Q02952 1782 aa20.03■□□□□ 0.8
LDLR-213ENST00000560502 LRRC37A3O60309 1634 aa20.03■□□□□ 0.8
LDLR-213ENST00000560502 CRB1P82279 1406 aa20.02■□□□□ 0.8
LDLR-213ENST00000560502 PDE3BQ13370 1112 aa20.02■□□□□ 0.8
LDLR-213ENST00000560502 RGPD3A6NKT7 1758 aaPredicted RBP20.01■□□□□ 0.79
LDLR-213ENST00000560502 RGPD4Q7Z3J3 1758 aa20.01■□□□□ 0.79
LDLR-213ENST00000560502 AATKQ6ZMQ8 1374 aa20.01■□□□□ 0.79
LDLR-213ENST00000560502 APBA3O96018 575 aa20.01■□□□□ 0.79
LDLR-213ENST00000560502 L3MBTL2Q969R5 705 aa20.01■□□□□ 0.79
LDLR-213ENST00000560502 CABP1Q9NZU7 370 aa20.01■□□□□ 0.79
LDLR-213ENST00000560502 SBF2Q86WG5 1849 aa20.01■□□□□ 0.79
LDLR-213ENST00000560502 NLRP6P59044 892 aa19.97■□□□□ 0.79
LDLR-213ENST00000560502 RGPD5Q99666 1765 aa19.97■□□□□ 0.79
LDLR-213ENST00000560502 EVC2Q86UK5 1308 aa19.97■□□□□ 0.79
LDLR-213ENST00000560502 OVOS2A0A0G2JMS6 1433 aa19.96■□□□□ 0.79
LDLR-213ENST00000560502 OVOS2A0A0J9YW53 1432 aa19.96■□□□□ 0.79
LDLR-213ENST00000560502 OVOS2Q6IE36 1432 aa19.96■□□□□ 0.79
LDLR-213ENST00000560502 CPSF1Q10570 1443 aaKnown RBP19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms