RNA–Protein interactions for RNA: ENST00000558544.5

TPM1-214, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 1,399 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-214ENST00000558544 SPATA31A3Q5VYP0 1347 aa24.23■■□□□ 1.47
TPM1-214ENST00000558544 PAK3O75914 559 aaPredicted RBP24.23■■□□□ 1.47
TPM1-214ENST00000558544 ABCA3Q99758 1704 aa24.23■■□□□ 1.47
TPM1-214ENST00000558544 HDGFL2Q7Z4V5 671 aaPredicted RBP24.22■■□□□ 1.47
TPM1-214ENST00000558544 TERF2IPQ9NYB0 399 aa24.22■■□□□ 1.47
TPM1-214ENST00000558544 PIK3C2AO00443 1686 aa24.22■■□□□ 1.47
TPM1-214ENST00000558544 ANKRD36BQ8N2N9 1353 aa24.21■■□□□ 1.47
TPM1-214ENST00000558544 LMOD2Q6P5Q4 547 aa24.21■■□□□ 1.47
TPM1-214ENST00000558544 ZNF692Q9BU19 519 aaPredicted RBP24.21■■□□□ 1.47
TPM1-214ENST00000558544 CRYBG1Q9Y4K1 1723 aa24.21■■□□□ 1.47
TPM1-214ENST00000558544 SSH2Q76I76 1423 aa24.2■■□□□ 1.46
TPM1-214ENST00000558544 CCDC7Q96M83 1385 aa24.2■■□□□ 1.46
TPM1-214ENST00000558544 BRD4O60885 1362 aaPredicted RBP24.19■■□□□ 1.46
TPM1-214ENST00000558544 WASHC2AQ641Q2 1341 aa24.18■■□□□ 1.46
TPM1-214ENST00000558544 ARHGEF10O15013 1369 aa24.18■■□□□ 1.46
TPM1-214ENST00000558544 MARF1Q9Y4F3 1742 aaKnown RBP24.17■■□□□ 1.46
TPM1-214ENST00000558544 KIF20BQ96Q89 1820 aa24.17■■□□□ 1.46
TPM1-214ENST00000558544 PHRF1Q9P1Y6 1649 aaKnown RBP24.17■■□□□ 1.46
TPM1-214ENST00000558544 EDC4Q6P2E9 1401 aaKnown RBP24.17■■□□□ 1.46
TPM1-214ENST00000558544 MED1Q15648 1581 aaPredicted RBP24.16■■□□□ 1.46
TPM1-214ENST00000558544 TTC21BQ7Z4L5 1316 aa24.15■■□□□ 1.46
TPM1-214ENST00000558544 PLEKHG5O94827 1062 aa24.14■■□□□ 1.45
TPM1-214ENST00000558544 LRP6O75581 1613 aa24.13■■□□□ 1.45
TPM1-214ENST00000558544 USP54Q70EL1 1684 aa24.13■■□□□ 1.45
TPM1-214ENST00000558544 NUTM2GQ5VZR2 741 aa24.13■■□□□ 1.45
TPM1-214ENST00000558544 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.13■■□□□ 1.45
TPM1-214ENST00000558544 ABTB2Q8N961 1025 aa24.13■■□□□ 1.45
TPM1-214ENST00000558544 SPATA31A6Q5VVP1 1343 aa24.13■■□□□ 1.45
TPM1-214ENST00000558544 TTC21AQ8NDW8 1320 aa24.12■■□□□ 1.45
TPM1-214ENST00000558544 NSD3Q9BZ95 1437 aa24.11■■□□□ 1.45
TPM1-214ENST00000558544 NUTM2BA6NNL0 878 aaPredicted RBP24.11■■□□□ 1.45
TPM1-214ENST00000558544 NUTM2EB1AL46 878 aaPredicted RBP24.11■■□□□ 1.45
TPM1-214ENST00000558544 NUTM2AQ8IVF1 878 aaPredicted RBP24.11■■□□□ 1.45
TPM1-214ENST00000558544 CABLES1Q8TDN4 633 aa24.09■■□□□ 1.45
TPM1-214ENST00000558544 PANK3Q9H999 370 aa24.09■■□□□ 1.45
TPM1-214ENST00000558544 CARD14Q9BXL6 1004 aa24.08■■□□□ 1.45
TPM1-214ENST00000558544 NME9Q86XW9 330 aa24.07■■□□□ 1.44
TPM1-214ENST00000558544 ANKRD26Q9UPS8 1709 aa24.06■■□□□ 1.44
TPM1-214ENST00000558544 SLIT3O75094 1523 aa24.06■■□□□ 1.44
TPM1-214ENST00000558544 HAP1P54257 671 aaPredicted RBP24.05■■□□□ 1.44
TPM1-214ENST00000558544 NLRP6P59044 892 aa24.05■■□□□ 1.44
TPM1-214ENST00000558544 NLRP13Q86W25 1043 aa24.04■■□□□ 1.44
TPM1-214ENST00000558544 ZRANB1Q9UGI0 708 aa24.04■■□□□ 1.44
TPM1-214ENST00000558544 USP19O94966 1318 aa24.04■■□□□ 1.44
TPM1-214ENST00000558544 ADAMTS2O95450 1211 aa24.03■■□□□ 1.44
TPM1-214ENST00000558544 USP31Q70CQ4 1352 aa24.02■■□□□ 1.44
TPM1-214ENST00000558544 OVOS2A0A0J9YW53 1432 aa24.02■■□□□ 1.44
TPM1-214ENST00000558544 OVOS2Q6IE36 1432 aa24.02■■□□□ 1.44
TPM1-214ENST00000558544 MEX3CQ5U5Q3 659 aaKnown RBP24.01■■□□□ 1.43
TPM1-214ENST00000558544 PLCH1Q4KWH8 1693 aa24■■□□□ 1.43
TPM1-214ENST00000558544 LTN1O94822 1766 aa23.99■■□□□ 1.43
TPM1-214ENST00000558544 CGNL1Q0VF96 1302 aa23.98■■□□□ 1.43
TPM1-214ENST00000558544 FYB1O15117 783 aa23.98■■□□□ 1.43
TPM1-214ENST00000558544 GGNBP2Q9H3C7 697 aa23.98■■□□□ 1.43
TPM1-214ENST00000558544 NFAT5O94916 1531 aa23.98■■□□□ 1.43
TPM1-214ENST00000558544 COL14A1Q05707 1796 aaKnown RBP23.97■■□□□ 1.43
TPM1-214ENST00000558544 SOX12O15370 315 aa23.96■■□□□ 1.43
TPM1-214ENST00000558544 COG3Q96JB2 828 aa23.96■■□□□ 1.43
TPM1-214ENST00000558544 ZNF316A6NFI3 1004 aaPredicted RBP23.95■■□□□ 1.42
TPM1-214ENST00000558544 GCP02774 474 aa23.95■■□□□ 1.42
TPM1-214ENST00000558544 C8orf37Q96NL8 207 aa23.95■■□□□ 1.42
TPM1-214ENST00000558544 KNSTRNQ9Y448 316 aa23.95■■□□□ 1.42
TPM1-214ENST00000558544 ZC3H6P61129 1189 aaKnown RBP23.94■■□□□ 1.42
TPM1-214ENST00000558544 KIAA0232Q92628 1395 aa23.94■■□□□ 1.42
TPM1-214ENST00000558544 NWD2Q9ULI1 1742 aa23.93■■□□□ 1.42
TPM1-214ENST00000558544 RGPD5Q99666 1765 aa23.93■■□□□ 1.42
TPM1-214ENST00000558544 PER1O15534 1290 aaPredicted RBP23.91■■□□□ 1.42
TPM1-214ENST00000558544 KCNH5Q8NCM2 988 aa23.91■■□□□ 1.42
TPM1-214ENST00000558544 NRAPQ86VF7 1730 aa23.91■■□□□ 1.42
TPM1-214ENST00000558544 MAP2P11137 1827 aaKnown RBP23.9■■□□□ 1.42
TPM1-214ENST00000558544 NSD2O96028 1365 aa23.9■■□□□ 1.42
TPM1-214ENST00000558544 LMO7Q8WWI1 1683 aa23.9■■□□□ 1.42
TPM1-214ENST00000558544 COL18A1P39060 1754 aa23.9■■□□□ 1.42
TPM1-214ENST00000558544 ZBTB7CA1YPR0 619 aa23.9■■□□□ 1.42
TPM1-214ENST00000558544 NGLY1Q96IV0 654 aa23.9■■□□□ 1.42
TPM1-214ENST00000558544 PRDM11Q9NQV5 511 aa23.9■■□□□ 1.42
TPM1-214ENST00000558544 CPDO75976 1380 aa23.89■■□□□ 1.42
TPM1-214ENST00000558544 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.89■■□□□ 1.42
TPM1-214ENST00000558544 DDX10Q13206 875 aaKnown RBP23.89■■□□□ 1.41
TPM1-214ENST00000558544 PHF23Q9BUL5 403 aaPredicted RBP23.89■■□□□ 1.41
TPM1-214ENST00000558544 AFF2P51816 1311 aa23.88■■□□□ 1.41
TPM1-214ENST00000558544 FAM83GA6ND36 823 aa23.88■■□□□ 1.41
TPM1-214ENST00000558544 CHRNA2Q15822 529 aa23.88■■□□□ 1.41
TPM1-214ENST00000558544 AMER1Q5JTC6 1135 aaPredicted RBP23.88■■□□□ 1.41
TPM1-214ENST00000558544 SLIT2O94813 1529 aa23.87■■□□□ 1.41
TPM1-214ENST00000558544 FBLN1P23142 703 aa23.85■■□□□ 1.41
TPM1-214ENST00000558544 CNGB1Q14028 1251 aaPredicted RBP23.84■■□□□ 1.41
TPM1-214ENST00000558544 CC2D1BQ5T0F9 858 aaKnown RBP23.84■■□□□ 1.41
TPM1-214ENST00000558544 ARHGEF25Q86VW2 580 aa23.84■■□□□ 1.41
TPM1-214ENST00000558544 ABCC6O95255 1503 aa23.83■■□□□ 1.41
TPM1-214ENST00000558544 FNBP4Q8N3X1 1017 aaPredicted RBP23.83■■□□□ 1.41
TPM1-214ENST00000558544 PEAK1Q9H792 1746 aa23.83■■□□□ 1.41
TPM1-214ENST00000558544 CAMTA1Q9Y6Y1 1673 aa23.83■■□□□ 1.41
TPM1-214ENST00000558544 BCL9LQ86UU0 1499 aa23.82■■□□□ 1.4
TPM1-214ENST00000558544 BTG4Q9NY30 223 aa23.82■■□□□ 1.4
TPM1-214ENST00000558544 NPC1L1Q9UHC9 1359 aa23.82■■□□□ 1.4
TPM1-214ENST00000558544 TNNT2P45379 298 aaPredicted RBP23.81■■□□□ 1.4
TPM1-214ENST00000558544 MORC1Q86VD1 984 aa23.81■■□□□ 1.4
TPM1-214ENST00000558544 USP21Q9UK80 565 aa23.81■■□□□ 1.4
TPM1-214ENST00000558544 AATKQ6ZMQ8 1374 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 163.4 ms