RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ZNF692Q9BU19 519 aaPredicted RBP13.22□□□□□ -0.29
CUX1-216ENST00000558469 KIF20BQ96Q89 1820 aa13.22□□□□□ -0.29
CUX1-216ENST00000558469 NHSL1Q5SYE7 1610 aa13.21□□□□□ -0.29
CUX1-216ENST00000558469 NRKQ7Z2Y5 1582 aa13.21□□□□□ -0.29
CUX1-216ENST00000558469 FOXO3O43524 673 aa13.21□□□□□ -0.29
CUX1-216ENST00000558469 PIP4K2BP78356 416 aa13.21□□□□□ -0.29
CUX1-216ENST00000558469 PSME1Q06323 249 aa13.21□□□□□ -0.29
CUX1-216ENST00000558469 CARD14Q9BXL6 1004 aa13.21□□□□□ -0.29
CUX1-216ENST00000558469 DDX17Q92841 729 aaKnown RBP13.2□□□□□ -0.3
CUX1-216ENST00000558469 SPINK5Q9NQ38 1064 aaPredicted RBP13.2□□□□□ -0.3
CUX1-216ENST00000558469 TRPM3Q9HCF6 1732 aaPredicted RBP13.19□□□□□ -0.3
CUX1-216ENST00000558469 XPCQ01831 940 aaPredicted RBP13.19□□□□□ -0.3
CUX1-216ENST00000558469 KNSTRNQ9Y448 316 aa13.19□□□□□ -0.3
CUX1-216ENST00000558469 USP6P35125 1406 aa13.19□□□□□ -0.3
CUX1-216ENST00000558469 NSD3Q9BZ95 1437 aa13.19□□□□□ -0.3
CUX1-216ENST00000558469 PHLPP1O60346 1717 aa13.19□□□□□ -0.3
CUX1-216ENST00000558469 PER1O15534 1290 aaPredicted RBP13.18□□□□□ -0.3
CUX1-216ENST00000558469 KRT28Q7Z3Y7 464 aa13.18□□□□□ -0.3
CUX1-216ENST00000558469 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.18□□□□□ -0.33e-6■□□□□ 10.3
CUX1-216ENST00000558469 EDC4Q6P2E9 1401 aaKnown RBP13.18□□□□□ -0.3
CUX1-216ENST00000558469 NPHP3Q7Z494 1330 aa13.17□□□□□ -0.3
CUX1-216ENST00000558469 ANKRD26Q9UPS8 1709 aa13.17□□□□□ -0.3
CUX1-216ENST00000558469 CAPN15O75808 1086 aa13.17□□□□□ -0.3
CUX1-216ENST00000558469 PAK3O75914 559 aaPredicted RBP13.17□□□□□ -0.3
CUX1-216ENST00000558469 PXDNQ92626 1479 aa13.16□□□□□ -0.3
CUX1-216ENST00000558469 PIK3C2AO00443 1686 aa13.16□□□□□ -0.3
CUX1-216ENST00000558469 CNGB1Q14028 1251 aaPredicted RBP13.16□□□□□ -0.3
CUX1-216ENST00000558469 FOXD4L1Q9NU39 408 aa13.16□□□□□ -0.3
CUX1-216ENST00000558469 TTC21BQ7Z4L5 1316 aa13.15□□□□□ -0.3
CUX1-216ENST00000558469 ALS2Q96Q42 1657 aa13.15□□□□□ -0.3
CUX1-216ENST00000558469 AHDC1Q5TGY3 1603 aaPredicted RBP13.15□□□□□ -0.3
CUX1-216ENST00000558469 DIEXFQ68CQ4 756 aaKnown RBP13.15□□□□□ -0.3
CUX1-216ENST00000558469 CGNL1Q0VF96 1302 aa13.14□□□□□ -0.31
CUX1-216ENST00000558469 SSH2Q76I76 1423 aa13.14□□□□□ -0.31
CUX1-216ENST00000558469 BRD4O60885 1362 aaPredicted RBP13.14□□□□□ -0.31
CUX1-216ENST00000558469 TTC21AQ8NDW8 1320 aa13.13□□□□□ -0.31
CUX1-216ENST00000558469 MARF1Q9Y4F3 1742 aaKnown RBP13.13□□□□□ -0.31
CUX1-216ENST00000558469 MYCNP04198 464 aaPredicted RBP13.13□□□□□ -0.31
CUX1-216ENST00000558469 AMER1Q5JTC6 1135 aaPredicted RBP13.13□□□□□ -0.31
CUX1-216ENST00000558469 CC2D1BQ5T0F9 858 aaKnown RBP13.13□□□□□ -0.31
CUX1-216ENST00000558469 LMOD2Q6P5Q4 547 aa13.13□□□□□ -0.31
CUX1-216ENST00000558469 NME9Q86XW9 330 aa13.13□□□□□ -0.31
CUX1-216ENST00000558469 SOS2Q07890 1332 aaPredicted RBP13.13□□□□□ -0.31
CUX1-216ENST00000558469 FYB1O15117 783 aa13.12□□□□□ -0.31
CUX1-216ENST00000558469 ABTB2Q8N961 1025 aa13.12□□□□□ -0.31
CUX1-216ENST00000558469 USP54Q70EL1 1684 aa13.12□□□□□ -0.31
CUX1-216ENST00000558469 SBNO1A3KN83 1393 aa13.11□□□□□ -0.31
CUX1-216ENST00000558469 COL16A1Q07092 1604 aaPredicted RBP13.11□□□□□ -0.31
CUX1-216ENST00000558469 NUTM2GQ5VZR2 741 aa13.11□□□□□ -0.31
CUX1-216ENST00000558469 GGNBP2Q9H3C7 697 aa13.11□□□□□ -0.31
CUX1-216ENST00000558469 ZRANB1Q9UGI0 708 aa13.11□□□□□ -0.31
CUX1-216ENST00000558469 MAP2P11137 1827 aaKnown RBP13.11□□□□□ -0.31
CUX1-216ENST00000558469 SAMD1Q6SPF0 538 aaPredicted RBP13.1□□□□□ -0.31
CUX1-216ENST00000558469 TNS3Q68CZ2 1445 aa13.1□□□□□ -0.31
CUX1-216ENST00000558469 SPATA31A3Q5VYP0 1347 aa13.1□□□□□ -0.31
CUX1-216ENST00000558469 NSD2O96028 1365 aa13.09□□□□□ -0.31
CUX1-216ENST00000558469 NPC1L1Q9UHC9 1359 aa13.09□□□□□ -0.31
CUX1-216ENST00000558469 NLRP6P59044 892 aa13.09□□□□□ -0.31
CUX1-216ENST00000558469 COG3Q96JB2 828 aa13.09□□□□□ -0.31
CUX1-216ENST00000558469 CRYBG1Q9Y4K1 1723 aa13.08□□□□□ -0.32
CUX1-216ENST00000558469 ANP32CO43423 234 aa13.08□□□□□ -0.32
CUX1-216ENST00000558469 PLEKHG5O94827 1062 aa13.08□□□□□ -0.32
CUX1-216ENST00000558469 MORC1Q86VD1 984 aa13.08□□□□□ -0.32
CUX1-216ENST00000558469 LRRC59Q96AG4 307 aaKnown RBP13.08□□□□□ -0.32
CUX1-216ENST00000558469 ARHGEF10O15013 1369 aa13.07□□□□□ -0.32
CUX1-216ENST00000558469 PHRF1Q9P1Y6 1649 aaKnown RBP13.07□□□□□ -0.32
CUX1-216ENST00000558469 NLRP13Q86W25 1043 aa13.07□□□□□ -0.32
CUX1-216ENST00000558469 ABCA3Q99758 1704 aa13.07□□□□□ -0.32
CUX1-216ENST00000558469 LTN1O94822 1766 aa13.07□□□□□ -0.32
CUX1-216ENST00000558469 USP31Q70CQ4 1352 aa13.07□□□□□ -0.32
CUX1-216ENST00000558469 OVOS2A0A0J9YW53 1432 aa13.06□□□□□ -0.32
CUX1-216ENST00000558469 OVOS2Q6IE36 1432 aa13.06□□□□□ -0.32
CUX1-216ENST00000558469 ZBTB22O15209 634 aa13.06□□□□□ -0.32
CUX1-216ENST00000558469 TNNT2P45379 298 aaPredicted RBP13.06□□□□□ -0.32
CUX1-216ENST00000558469 MED1Q15648 1581 aaPredicted RBP13.06□□□□□ -0.32
CUX1-216ENST00000558469 COL22A1Q8NFW1 1626 aaPredicted RBP13.06□□□□□ -0.32
CUX1-216ENST00000558469 SHPRHQ149N8 1683 aa13.05□□□□□ -0.32
CUX1-216ENST00000558469 HSPA1LP34931 641 aa13.05□□□□□ -0.32
CUX1-216ENST00000558469 PRKRIP1Q9H875 184 aaPredicted RBP13.05□□□□□ -0.32
CUX1-216ENST00000558469 PARD3Q8TEW0 1356 aa13.05□□□□□ -0.32
CUX1-216ENST00000558469 SOX12O15370 315 aa13.04□□□□□ -0.32
CUX1-216ENST00000558469 RALBP1Q15311 655 aa13.04□□□□□ -0.32
CUX1-216ENST00000558469 FBLN1P23142 703 aa13.03□□□□□ -0.32
CUX1-216ENST00000558469 CABLES1Q8TDN4 633 aa13.03□□□□□ -0.32
CUX1-216ENST00000558469 PNPLA6Q8IY17 1366 aa13.03□□□□□ -0.32
CUX1-216ENST00000558469 SLIT3O75094 1523 aa13.03□□□□□ -0.32
CUX1-216ENST00000558469 FBXO41Q8TF61 875 aa13.02□□□□□ -0.33
CUX1-216ENST00000558469 USP19O94966 1318 aa13.02□□□□□ -0.33
CUX1-216ENST00000558469 RGPD5Q99666 1765 aa13.02□□□□□ -0.33
CUX1-216ENST00000558469 GCP02774 474 aa13.01□□□□□ -0.33
CUX1-216ENST00000558469 HAP1P54257 671 aaPredicted RBP13.01□□□□□ -0.33
CUX1-216ENST00000558469 KCNH5Q8NCM2 988 aa13.01□□□□□ -0.33
CUX1-216ENST00000558469 NFAT5O94916 1531 aa13.01□□□□□ -0.33
CUX1-216ENST00000558469 JCADQ9P266 1359 aa13□□□□□ -0.33
CUX1-216ENST00000558469 MYBBP1AQ9BQG0 1328 aaKnown RBP13□□□□□ -0.33
CUX1-216ENST00000558469 PPP2R1AP30153 589 aa13□□□□□ -0.33
CUX1-216ENST00000558469 DSG3P32926 999 aa13□□□□□ -0.33
CUX1-216ENST00000558469 MIER1Q8N108 512 aa13□□□□□ -0.33
CUX1-216ENST00000558469 RRS1Q15050 365 aaKnown RBP12.99□□□□□ -0.33
CUX1-216ENST00000558469 PEAK1Q9H792 1746 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms