RNA–Protein interactions for RNA: ENST00000556564.5

PTPN21-208, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN21, Length 6,166 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-208ENST00000556564 RUFY2Q8WXA3 655 aa21.29■■□□□ 1
PTPN21-208ENST00000556564 BTBD11A6QL63 1104 aa21.29■■□□□ 1
PTPN21-208ENST00000556564 HDGFL1Q5TGJ6 251 aa21.29■■□□□ 1
PTPN21-208ENST00000556564 AKAP17AQ02040 695 aaKnown RBP21.28■■□□□ 1
PTPN21-208ENST00000556564 SYNE3Q6ZMZ3 975 aa21.28■■□□□ 1
PTPN21-208ENST00000556564 ANO2Q9NQ90 1003 aa21.28■■□□□ 1
PTPN21-208ENST00000556564 WASLO00401 505 aaPredicted RBP21.28■■□□□ 1
PTPN21-208ENST00000556564 SAMD1Q6SPF0 538 aaPredicted RBP21.27■■□□□ 1
PTPN21-208ENST00000556564 NRDCO43847 1150 aa21.27■■□□□ 1
PTPN21-208ENST00000556564 HSP90AB4PQ58FF6 505 aa21.27■■□□□ 1
PTPN21-208ENST00000556564 ZNF518AQ6AHZ1 1483 aa21.27■■□□□ 1
PTPN21-208ENST00000556564 SLC4A2P04920 1241 aa21.26■□□□□ 0.99
PTPN21-208ENST00000556564 A2MP01023 1474 aa21.26■□□□□ 0.99
PTPN21-208ENST00000556564 H3BQV1 296 aa21.26■□□□□ 0.99
PTPN21-208ENST00000556564 IFFO2Q5TF58 517 aa21.26■□□□□ 0.99
PTPN21-208ENST00000556564 GZF1Q9H116 711 aaPredicted RBP21.26■□□□□ 0.99
PTPN21-208ENST00000556564 KRT28Q7Z3Y7 464 aa21.25■□□□□ 0.99
PTPN21-208ENST00000556564 DHX16O60231 1041 aaKnown RBP21.25■□□□□ 0.99
PTPN21-208ENST00000556564 NGLY1Q96IV0 654 aa21.25■□□□□ 0.99
PTPN21-208ENST00000556564 LNPKQ9C0E8 428 aa21.25■□□□□ 0.99
PTPN21-208ENST00000556564 UGGT2Q9NYU1 1516 aa21.25■□□□□ 0.99
PTPN21-208ENST00000556564 PNISRQ8TF01 805 aaKnown RBP21.25■□□□□ 0.99
PTPN21-208ENST00000556564 WASHC4Q2M389 1173 aa21.24■□□□□ 0.99
PTPN21-208ENST00000556564 FAM184AQ8NB25 1140 aa21.24■□□□□ 0.99
PTPN21-208ENST00000556564 BICDL1Q6ZP65 573 aa21.23■□□□□ 0.99
PTPN21-208ENST00000556564 C1orf115Q9H7X2 142 aa21.23■□□□□ 0.99
PTPN21-208ENST00000556564 NOB1Q9ULX3 412 aaKnown RBP21.23■□□□□ 0.99
PTPN21-208ENST00000556564 DUOX2Q9NRD8 1548 aa21.22■□□□□ 0.99
PTPN21-208ENST00000556564 ERC2O15083 957 aa21.22■□□□□ 0.99
PTPN21-208ENST00000556564 CNNM1Q9NRU3 951 aa21.22■□□□□ 0.99
PTPN21-208ENST00000556564 TRAPPC8Q9Y2L5 1435 aa21.22■□□□□ 0.99
PTPN21-208ENST00000556564 CREBRFQ8IUR6 639 aa21.21■□□□□ 0.99
PTPN21-208ENST00000556564 KIF3AQ9Y496 699 aa21.21■□□□□ 0.99
PTPN21-208ENST00000556564 FAM161AQ3B820 660 aa21.21■□□□□ 0.99
PTPN21-208ENST00000556564 MIS18AQ9NYP9 233 aa21.21■□□□□ 0.99
PTPN21-208ENST00000556564 SF3A1Q15459 793 aaKnown RBP21.2■□□□□ 0.98
PTPN21-208ENST00000556564 GNAT3A8MTJ3 354 aa21.2■□□□□ 0.98
PTPN21-208ENST00000556564 NFXL1Q6ZNB6 911 aa21.2■□□□□ 0.98
PTPN21-208ENST00000556564 SURF6O75683 361 aaKnown RBP21.19■□□□□ 0.98
PTPN21-208ENST00000556564 FOXD4L6Q3SYB3 417 aaPredicted RBP21.19■□□□□ 0.98
PTPN21-208ENST00000556564 FOXD4L3Q6VB84 417 aaPredicted RBP21.19■□□□□ 0.98
PTPN21-208ENST00000556564 LRPPRCP42704 1394 aaKnown RBP21.19■□□□□ 0.98
PTPN21-208ENST00000556564 TRDNQ13061 729 aa21.19■□□□□ 0.98
PTPN21-208ENST00000556564 ZKSCAN1P17029 563 aaPredicted RBP21.19■□□□□ 0.98
PTPN21-208ENST00000556564 CWC22Q9HCG8 908 aaKnown RBP21.19■□□□□ 0.98
PTPN21-208ENST00000556564 HSPA2P54652 639 aa21.19■□□□□ 0.98
PTPN21-208ENST00000556564 DNAJC2Q99543 621 aaKnown RBP21.19■□□□□ 0.98
PTPN21-208ENST00000556564 GNAI3P08754 354 aa21.18■□□□□ 0.98
PTPN21-208ENST00000556564 MCTP1Q6DN14 999 aa21.18■□□□□ 0.98
PTPN21-208ENST00000556564 TMOD3Q9NYL9 352 aa21.17■□□□□ 0.98
PTPN21-208ENST00000556564 MSH6P52701 1360 aa21.17■□□□□ 0.98
PTPN21-208ENST00000556564 NCKAP5LQ9HCH0 1330 aa21.17■□□□□ 0.98
PTPN21-208ENST00000556564 UHRF1BP1LA0JNW5 1464 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 UBAP1LF5GYI3 381 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 CSPP1Q1MSJ5 1256 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 PTCD1O75127 700 aaKnown RBP21.16■□□□□ 0.98
PTPN21-208ENST00000556564 REC8O95072 547 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 CCDC34Q96HJ3 373 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 C14orf93Q9H972 538 aaKnown RBP21.16■□□□□ 0.98
PTPN21-208ENST00000556564 ERICH2A1L162 156 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 MCM10Q7L590 875 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 SIL1Q9H173 461 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 EMILIN1Q9Y6C2 1016 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 ABCC2Q92887 1545 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 PTMSP20962 102 aa21.16■□□□□ 0.98
PTPN21-208ENST00000556564 TCEAL9Q9UHQ7 104 aa21.15■□□□□ 0.98
PTPN21-208ENST00000556564 MTMR7Q9Y216 660 aa21.15■□□□□ 0.98
PTPN21-208ENST00000556564 FCHSD2O94868 740 aa21.15■□□□□ 0.98
PTPN21-208ENST00000556564 SYAP1Q96A49 352 aaPredicted RBP21.15■□□□□ 0.98
PTPN21-208ENST00000556564 PDE4AP27815 886 aa21.14■□□□□ 0.97
PTPN21-208ENST00000556564 MPRIPQ6WCQ1 1025 aa21.14■□□□□ 0.97
PTPN21-208ENST00000556564 TTC39AQ5SRH9 613 aa21.14■□□□□ 0.97
PTPN21-208ENST00000556564 BCAR3O75815 825 aa21.13■□□□□ 0.97
PTPN21-208ENST00000556564 RNF20Q5VTR2 975 aa21.13■□□□□ 0.97
PTPN21-208ENST00000556564 GNAI2P04899 355 aa21.13■□□□□ 0.97
PTPN21-208ENST00000556564 DCTN1Q14203 1278 aa21.13■□□□□ 0.97
PTPN21-208ENST00000556564 CADPS2Q86UW7 1296 aa21.13■□□□□ 0.97
PTPN21-208ENST00000556564 NFE2L2Q16236 605 aa21.13■□□□□ 0.97
PTPN21-208ENST00000556564 FSD1Q9BTV5 496 aa21.13■□□□□ 0.97
PTPN21-208ENST00000556564 RIMS2Q9UQ26 1411 aa21.13■□□□□ 0.97
PTPN21-208ENST00000556564 TRIM29Q14134 588 aa21.12■□□□□ 0.97
PTPN21-208ENST00000556564 THUMPD2Q9BTF0 503 aaKnown RBP21.12■□□□□ 0.97
PTPN21-208ENST00000556564 SCAF11Q99590 1463 aaKnown RBP21.12■□□□□ 0.97
PTPN21-208ENST00000556564 CPLX1O14810 134 aa21.12■□□□□ 0.97
PTPN21-208ENST00000556564 CLASRPQ8N2M8 674 aaKnown RBP21.12■□□□□ 0.97
PTPN21-208ENST00000556564 FOSBP53539 338 aa21.12■□□□□ 0.97
PTPN21-208ENST00000556564 INTS3Q68E01 1043 aaKnown RBP21.12■□□□□ 0.97
PTPN21-208ENST00000556564 ACEP12821 1306 aa21.12■□□□□ 0.97
PTPN21-208ENST00000556564 TPM4P67936 248 aa21.11■□□□□ 0.97
PTPN21-208ENST00000556564 CHRNA2Q15822 529 aa21.11■□□□□ 0.97
PTPN21-208ENST00000556564 CPLX2Q6PUV4 134 aaKnown RBP21.11■□□□□ 0.97
PTPN21-208ENST00000556564 TBC1D2BQ9UPU7 963 aa21.11■□□□□ 0.97
PTPN21-208ENST00000556564 STARD3NLO95772 234 aa21.1■□□□□ 0.97
PTPN21-208ENST00000556564 SLC4A3P48751 1232 aa21.1■□□□□ 0.97
PTPN21-208ENST00000556564 ABCC10Q5T3U5 1492 aa21.1■□□□□ 0.97
PTPN21-208ENST00000556564 SRCIN1Q9C0H9 1055 aa21.1■□□□□ 0.97
PTPN21-208ENST00000556564 NINLQ9Y2I6 1382 aa21.1■□□□□ 0.97
PTPN21-208ENST00000556564 WDR63Q8IWG1 891 aa21.1■□□□□ 0.97
PTPN21-208ENST00000556564 L1TD1Q5T7N2 865 aaKnown RBP21.09■□□□□ 0.97
PTPN21-208ENST00000556564 CCDC85AQ96PX6 553 aaPredicted RBP21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms