RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 DCTN1Q14203 1278 aa12.84□□□□□ -0.35
ACTN1-216ENST00000556083 HOMER1Q86YM7 354 aa12.84□□□□□ -0.35
ACTN1-216ENST00000556083 WASHC4Q2M389 1173 aa12.83□□□□□ -0.35
ACTN1-216ENST00000556083 CT47A1Q5JQC4 288 aaPredicted RBP12.83□□□□□ -0.35
ACTN1-216ENST00000556083 PRG4Q92954 1404 aaPredicted RBP12.83□□□□□ -0.36
ACTN1-216ENST00000556083 MRE11P49959 708 aa12.83□□□□□ -0.36
ACTN1-216ENST00000556083 CAVIN1Q6NZI2 390 aaKnown RBP12.83□□□□□ -0.36
ACTN1-216ENST00000556083 BCL2L13Q9BXK5 485 aa12.83□□□□□ -0.36
ACTN1-216ENST00000556083 C9orf84Q5VXU9 1444 aa12.83□□□□□ -0.36
ACTN1-216ENST00000556083 CCDC39Q9UFE4 941 aa12.83□□□□□ -0.36
ACTN1-216ENST00000556083 HSP90B2PQ58FF3 399 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 SYTL4Q96C24 671 aaPredicted RBP12.82□□□□□ -0.36
ACTN1-216ENST00000556083 CTNNA3Q9UI47 895 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 VPS37CA5D8V6 355 aaPredicted RBP12.82□□□□□ -0.36
ACTN1-216ENST00000556083 EPS15P42566 896 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 KRT32Q14532 448 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 PROSER2Q86WR7 435 aaPredicted RBP12.82□□□□□ -0.36
ACTN1-216ENST00000556083 KCNH5Q8NCM2 988 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 FSD1Q9BTV5 496 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 CDKL5O76039 1030 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 ANKLE2Q86XL3 938 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 NEUROD6Q96NK8 337 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 RAD54L2Q9Y4B4 1467 aa12.82□□□□□ -0.36
ACTN1-216ENST00000556083 CCDC141Q6ZP82 1450 aa12.81□□□□□ -0.36
ACTN1-216ENST00000556083 ABTB2Q8N961 1025 aa12.81□□□□□ -0.36
ACTN1-216ENST00000556083 MNS1Q8NEH6 495 aa12.81□□□□□ -0.36
ACTN1-216ENST00000556083 KINO60870 393 aaKnown RBP12.81□□□□□ -0.36
ACTN1-216ENST00000556083 MTHFSP49914 203 aa12.81□□□□□ -0.36
ACTN1-216ENST00000556083 TRIM22Q8IYM9 498 aa12.81□□□□□ -0.36
ACTN1-216ENST00000556083 TCP11L2Q8N4U5 519 aa12.8□□□□□ -0.36
ACTN1-216ENST00000556083 SDF4Q9BRK5 362 aa12.8□□□□□ -0.36
ACTN1-216ENST00000556083 PRDM2Q13029 1718 aa12.8□□□□□ -0.36
ACTN1-216ENST00000556083 STIM1Q13586 685 aa12.8□□□□□ -0.36
ACTN1-216ENST00000556083 ZSCAN31Q96LW9 406 aaPredicted RBP12.8□□□□□ -0.36
ACTN1-216ENST00000556083 FOXD4L1Q9NU39 408 aa12.8□□□□□ -0.36
ACTN1-216ENST00000556083 HMGN5P82970 282 aaKnown RBP12.8□□□□□ -0.36
ACTN1-216ENST00000556083 NOM1Q5C9Z4 860 aaKnown RBP12.8□□□□□ -0.36
ACTN1-216ENST00000556083 ABCC11Q96J66 1382 aa12.8□□□□□ -0.36
ACTN1-216ENST00000556083 HSP90AA2PQ14568 343 aaPredicted RBP12.79□□□□□ -0.36
ACTN1-216ENST00000556083 DNAI2Q9GZS0 605 aa12.79□□□□□ -0.36
ACTN1-216ENST00000556083 CCAR1Q8IX12 1150 aaKnown RBP12.79□□□□□ -0.36
ACTN1-216ENST00000556083 CCAR2Q8N163 923 aaKnown RBP12.79□□□□□ -0.36
ACTN1-216ENST00000556083 ZNF287Q9HBT7 754 aa12.79□□□□□ -0.36
ACTN1-216ENST00000556083 CIZ1Q9ULV3 898 aaPredicted RBP12.79□□□□□ -0.36
ACTN1-216ENST00000556083 SURF6O75683 361 aaKnown RBP12.79□□□□□ -0.36
ACTN1-216ENST00000556083 FCHSD2O94868 740 aa12.79□□□□□ -0.36
ACTN1-216ENST00000556083 TWISTNBQ3B726 338 aaPredicted RBP12.79□□□□□ -0.36
ACTN1-216ENST00000556083 RPAP2Q8IXW5 612 aaPredicted RBP12.79□□□□□ -0.36
ACTN1-216ENST00000556083 WASF1Q92558 559 aa12.79□□□□□ -0.36
ACTN1-216ENST00000556083 MAGEC2Q9UBF1 373 aaPredicted RBP12.79□□□□□ -0.36
ACTN1-216ENST00000556083 PPP2R1AP30153 589 aa12.78□□□□□ -0.36
ACTN1-216ENST00000556083 CDK5RAP3Q96JB5 506 aa12.78□□□□□ -0.36
ACTN1-216ENST00000556083 GGNBP2Q9H3C7 697 aa12.78□□□□□ -0.36
ACTN1-216ENST00000556083 SF3B2Q13435 895 aaKnown RBP12.78□□□□□ -0.36
ACTN1-216ENST00000556083 RTEL1-TNFRSF6BF6WH68 1400 aa12.78□□□□□ -0.36
ACTN1-216ENST00000556083 KRI1Q8N9T8 703 aaKnown RBP12.77□□□□□ -0.36
ACTN1-216ENST00000556083 NOL7Q9UMY1 257 aaKnown RBP12.77□□□□□ -0.36
ACTN1-216ENST00000556083 AQRO60306 1485 aaKnown RBP eCLIP12.77□□□□□ -0.377e-7■■■■□ 19.4
ACTN1-216ENST00000556083 CNKSR2Q8WXI2 1034 aa12.77□□□□□ -0.37
ACTN1-216ENST00000556083 RUSC2Q8N2Y8 1516 aa12.77□□□□□ -0.37
ACTN1-216ENST00000556083 KIAA0586Q9BVV6 1533 aa12.77□□□□□ -0.37
ACTN1-216ENST00000556083 LNPKQ9C0E8 428 aa12.77□□□□□ -0.37
ACTN1-216ENST00000556083 ZNHIT6Q9NWK9 470 aaKnown RBP12.77□□□□□ -0.37
ACTN1-216ENST00000556083 RAD21O60216 631 aa12.76□□□□□ -0.37
ACTN1-216ENST00000556083 CCDC27Q2M243 656 aa12.76□□□□□ -0.37
ACTN1-216ENST00000556083 RRP12Q5JTH9 1297 aaKnown RBP12.76□□□□□ -0.37
ACTN1-216ENST00000556083 HDGFL1Q5TGJ6 251 aa12.76□□□□□ -0.37
ACTN1-216ENST00000556083 ERLIN2O94905 339 aa12.76□□□□□ -0.37
ACTN1-216ENST00000556083 PRKAR2BP31323 418 aa12.76□□□□□ -0.37
ACTN1-216ENST00000556083 CCDC57Q2TAC2 916 aa12.76□□□□□ -0.37
ACTN1-216ENST00000556083 WDR33Q9C0J8 1336 aaKnown RBP12.76□□□□□ -0.37
ACTN1-216ENST00000556083 DESP17661 470 aa12.76□□□□□ -0.37
ACTN1-216ENST00000556083 CYP46A1Q9Y6A2 500 aa12.76□□□□□ -0.37
ACTN1-216ENST00000556083 PRXQ9BXM0 1461 aa12.75□□□□□ -0.37
ACTN1-216ENST00000556083 SYCP1Q15431 976 aa12.75□□□□□ -0.37
ACTN1-216ENST00000556083 POLA1P09884 1462 aaPredicted RBP12.75□□□□□ -0.37
ACTN1-216ENST00000556083 ZRSR2Q15696 482 aaKnown RBP12.75□□□□□ -0.37
ACTN1-216ENST00000556083 ANKRD18AQ8IVF6 992 aa12.75□□□□□ -0.37
ACTN1-216ENST00000556083 CABP2Q9NPB3 220 aa12.75□□□□□ -0.37
ACTN1-216ENST00000556083 ESCO1Q5FWF5 840 aa12.75□□□□□ -0.37
ACTN1-216ENST00000556083 CBFA2T2O43439 604 aa12.74□□□□□ -0.37
ACTN1-216ENST00000556083 CABP4P57796 275 aa12.74□□□□□ -0.37
ACTN1-216ENST00000556083 LRRCC1Q9C099 1032 aa12.74□□□□□ -0.37
ACTN1-216ENST00000556083 PLIN1O60240 522 aa12.74□□□□□ -0.37
ACTN1-216ENST00000556083 FBXW7Q969H0 707 aa12.74□□□□□ -0.37
ACTN1-216ENST00000556083 BMP2KQ9NSY1 1161 aaPredicted RBP12.74□□□□□ -0.37
ACTN1-216ENST00000556083 CWC15Q9P013 229 aaKnown RBP12.74□□□□□ -0.37
ACTN1-216ENST00000556083 HMOX1P09601 288 aa12.74□□□□□ -0.37
ACTN1-216ENST00000556083 TTC39AQ5SRH9 613 aa12.74□□□□□ -0.37
ACTN1-216ENST00000556083 TRIM21P19474 475 aaKnown RBP12.74□□□□□ -0.37
ACTN1-216ENST00000556083 FOXD4L5Q5VV16 416 aaPredicted RBP12.74□□□□□ -0.37
ACTN1-216ENST00000556083 FAM43AQ8N2R8 423 aa12.74□□□□□ -0.37
ACTN1-216ENST00000556083 FOXD4L4Q8WXT5 416 aaPredicted RBP12.74□□□□□ -0.37
ACTN1-216ENST00000556083 CNNM1Q9NRU3 951 aa12.73□□□□□ -0.37
ACTN1-216ENST00000556083 AMOTQ4VCS5 1084 aa12.73□□□□□ -0.37
ACTN1-216ENST00000556083 CFAP70Q5T0N1 1121 aa12.73□□□□□ -0.37
ACTN1-216ENST00000556083 FAM13BQ9NYF5 915 aa12.73□□□□□ -0.37
ACTN1-216ENST00000556083 ZNF652Q9Y2D9 606 aa12.73□□□□□ -0.37
ACTN1-216ENST00000556083 SOGA3Q5TF21 947 aa12.73□□□□□ -0.37
ACTN1-216ENST00000556083 PRAM1Q96QH2 718 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms