RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 KRT28Q7Z3Y7 464 aa23.71■■□□□ 1.39
SHOX-204ENST00000554971 POLR3GLQ9BT43 218 aa23.71■■□□□ 1.39
SHOX-204ENST00000554971 USP6P35125 1406 aa23.7■■□□□ 1.38
SHOX-204ENST00000554971 ALS2Q96Q42 1657 aa23.7■■□□□ 1.38
SHOX-204ENST00000554971 PSME1Q06323 249 aa23.69■■□□□ 1.38
SHOX-204ENST00000554971 SSH2Q76I76 1423 aa23.69■■□□□ 1.38
SHOX-204ENST00000554971 ANKRD36BQ8N2N9 1353 aa23.66■■□□□ 1.38
SHOX-204ENST00000554971 KTN1Q86UP2 1357 aaKnown RBP23.65■■□□□ 1.38
SHOX-204ENST00000554971 SBNO1A3KN83 1393 aa23.65■■□□□ 1.38
SHOX-204ENST00000554971 SHPRHQ149N8 1683 aa23.65■■□□□ 1.38
SHOX-204ENST00000554971 TNS3Q68CZ2 1445 aa23.65■■□□□ 1.38
SHOX-204ENST00000554971 SPATA31A3Q5VYP0 1347 aa23.64■■□□□ 1.37
SHOX-204ENST00000554971 LRRC59Q96AG4 307 aaKnown RBP23.63■■□□□ 1.37
SHOX-204ENST00000554971 ZNF692Q9BU19 519 aaPredicted RBP23.63■■□□□ 1.37
SHOX-204ENST00000554971 PIK3C2AO00443 1686 aa23.63■■□□□ 1.37
SHOX-204ENST00000554971 TERF2IPQ9NYB0 399 aa23.63■■□□□ 1.37
SHOX-204ENST00000554971 CARD14Q9BXL6 1004 aa23.61■■□□□ 1.37
SHOX-204ENST00000554971 PNPLA6Q8IY17 1366 aa23.61■■□□□ 1.37
SHOX-204ENST00000554971 MARF1Q9Y4F3 1742 aaKnown RBP23.61■■□□□ 1.37
SHOX-204ENST00000554971 HDGFL2Q7Z4V5 671 aaPredicted RBP23.61■■□□□ 1.37
SHOX-204ENST00000554971 COL22A1Q8NFW1 1626 aaPredicted RBP23.6■■□□□ 1.37
SHOX-204ENST00000554971 EDC4Q6P2E9 1401 aaKnown RBP23.6■■□□□ 1.37
SHOX-204ENST00000554971 PAK3O75914 559 aaPredicted RBP23.59■■□□□ 1.37
SHOX-204ENST00000554971 CRYBG1Q9Y4K1 1723 aa23.59■■□□□ 1.37
SHOX-204ENST00000554971 TTC21BQ7Z4L5 1316 aa23.59■■□□□ 1.37
SHOX-204ENST00000554971 BRD4O60885 1362 aaPredicted RBP23.58■■□□□ 1.37
SHOX-204ENST00000554971 JCADQ9P266 1359 aa23.58■■□□□ 1.37
SHOX-204ENST00000554971 PANK3Q9H999 370 aa23.57■■□□□ 1.36
SHOX-204ENST00000554971 ABCA3Q99758 1704 aa23.57■■□□□ 1.36
SHOX-204ENST00000554971 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.55■■□□□ 1.36
SHOX-204ENST00000554971 NSD3Q9BZ95 1437 aa23.55■■□□□ 1.36
SHOX-204ENST00000554971 MED1Q15648 1581 aaPredicted RBP23.55■■□□□ 1.36
SHOX-204ENST00000554971 LMOD2Q6P5Q4 547 aa23.55■■□□□ 1.36
SHOX-204ENST00000554971 ARHGEF10O15013 1369 aa23.54■■□□□ 1.36
SHOX-204ENST00000554971 NUTM2GQ5VZR2 741 aa23.54■■□□□ 1.36
SHOX-204ENST00000554971 USP54Q70EL1 1684 aa23.53■■□□□ 1.36
SHOX-204ENST00000554971 KIF20BQ96Q89 1820 aa23.53■■□□□ 1.36
SHOX-204ENST00000554971 ABTB2Q8N961 1025 aa23.53■■□□□ 1.36
SHOX-204ENST00000554971 TTC21AQ8NDW8 1320 aa23.52■■□□□ 1.36
SHOX-204ENST00000554971 NME9Q86XW9 330 aa23.52■■□□□ 1.36
SHOX-204ENST00000554971 ZRANB1Q9UGI0 708 aa23.52■■□□□ 1.36
SHOX-204ENST00000554971 PHRF1Q9P1Y6 1649 aaKnown RBP23.52■■□□□ 1.35
SHOX-204ENST00000554971 CABLES1Q8TDN4 633 aa23.51■■□□□ 1.35
SHOX-204ENST00000554971 NEFLP07196 543 aa23.51■■□□□ 1.35
SHOX-204ENST00000554971 LRP6O75581 1613 aa23.51■■□□□ 1.35
SHOX-204ENST00000554971 PER1O15534 1290 aaPredicted RBP23.5■■□□□ 1.35
SHOX-204ENST00000554971 PRKRIP1Q9H875 184 aaPredicted RBP23.5■■□□□ 1.35
SHOX-204ENST00000554971 FYB1O15117 783 aa23.48■■□□□ 1.35
SHOX-204ENST00000554971 PLEKHG5O94827 1062 aa23.48■■□□□ 1.35
SHOX-204ENST00000554971 OVOS2A0A0J9YW53 1432 aa23.47■■□□□ 1.35
SHOX-204ENST00000554971 OVOS2Q6IE36 1432 aa23.47■■□□□ 1.35
SHOX-204ENST00000554971 USP19O94966 1318 aa23.47■■□□□ 1.35
SHOX-204ENST00000554971 NLRP6P59044 892 aa23.47■■□□□ 1.35
SHOX-204ENST00000554971 USP31Q70CQ4 1352 aa23.47■■□□□ 1.35
SHOX-204ENST00000554971 SLIT3O75094 1523 aa23.46■■□□□ 1.35
SHOX-204ENST00000554971 SPATA31A6Q5VVP1 1343 aa23.46■■□□□ 1.35
SHOX-204ENST00000554971 ANKRD26Q9UPS8 1709 aa23.44■■□□□ 1.34
SHOX-204ENST00000554971 GGNBP2Q9H3C7 697 aa23.44■■□□□ 1.34
SHOX-204ENST00000554971 NLRP13Q86W25 1043 aa23.43■■□□□ 1.34
SHOX-204ENST00000554971 NUTM2BA6NNL0 878 aaPredicted RBP23.43■■□□□ 1.34
SHOX-204ENST00000554971 NUTM2EB1AL46 878 aaPredicted RBP23.43■■□□□ 1.34
SHOX-204ENST00000554971 NUTM2AQ8IVF1 878 aaPredicted RBP23.43■■□□□ 1.34
SHOX-204ENST00000554971 CGNL1Q0VF96 1302 aa23.42■■□□□ 1.34
SHOX-204ENST00000554971 AMER1Q5JTC6 1135 aaPredicted RBP23.42■■□□□ 1.34
SHOX-204ENST00000554971 FKBP8Q14318 412 aa23.41■■□□□ 1.34
SHOX-204ENST00000554971 NFAT5O94916 1531 aa23.41■■□□□ 1.34
SHOX-204ENST00000554971 KNSTRNQ9Y448 316 aa23.41■■□□□ 1.34
SHOX-204ENST00000554971 HNRNPUQ00839 825 aaKnown RBP eCLIP23.4■■□□□ 1.34
SHOX-204ENST00000554971 GCP02774 474 aa23.39■■□□□ 1.34
SHOX-204ENST00000554971 ADAMTS2O95450 1211 aa23.37■■□□□ 1.33
SHOX-204ENST00000554971 LTN1O94822 1766 aa23.37■■□□□ 1.33
SHOX-204ENST00000554971 FBLN1P23142 703 aa23.37■■□□□ 1.33
SHOX-204ENST00000554971 COG3Q96JB2 828 aa23.37■■□□□ 1.33
SHOX-204ENST00000554971 SOX12O15370 315 aa23.36■■□□□ 1.33
SHOX-204ENST00000554971 NSD2O96028 1365 aa23.34■■□□□ 1.33
SHOX-204ENST00000554971 KIAA0232Q92628 1395 aa23.34■■□□□ 1.33
SHOX-204ENST00000554971 ZC3H6P61129 1189 aaKnown RBP23.34■■□□□ 1.33
SHOX-204ENST00000554971 ERICH6BQ5W0A0 696 aa23.34■■□□□ 1.33
SHOX-204ENST00000554971 MAP2P11137 1827 aaKnown RBP23.34■■□□□ 1.33
SHOX-204ENST00000554971 HAP1P54257 671 aaPredicted RBP23.33■■□□□ 1.33
SHOX-204ENST00000554971 COL18A1P39060 1754 aa23.33■■□□□ 1.33
SHOX-204ENST00000554971 PLCH1Q4KWH8 1693 aa23.33■■□□□ 1.32
SHOX-204ENST00000554971 MRS2Q9HD23 443 aa23.33■■□□□ 1.32
SHOX-204ENST00000554971 CPDO75976 1380 aa23.33■■□□□ 1.32
SHOX-204ENST00000554971 NPC1L1Q9UHC9 1359 aa23.33■■□□□ 1.32
SHOX-204ENST00000554971 KCNH5Q8NCM2 988 aa23.31■■□□□ 1.32
SHOX-204ENST00000554971 RGPD5Q99666 1765 aa23.31■■□□□ 1.32
SHOX-204ENST00000554971 FAM83GA6ND36 823 aa23.31■■□□□ 1.32
SHOX-204ENST00000554971 CC2D1BQ5T0F9 858 aaKnown RBP23.31■■□□□ 1.32
SHOX-204ENST00000554971 LMO7Q8WWI1 1683 aa23.31■■□□□ 1.32
SHOX-204ENST00000554971 COL14A1Q05707 1796 aaKnown RBP23.3■■□□□ 1.32
SHOX-204ENST00000554971 ARHGEF25Q86VW2 580 aa23.29■■□□□ 1.32
SHOX-204ENST00000554971 C8orf37Q96NL8 207 aa23.29■■□□□ 1.32
SHOX-204ENST00000554971 ZBED9Q6R2W3 1325 aa23.29■■□□□ 1.32
SHOX-204ENST00000554971 CHRNA2Q15822 529 aa23.29■■□□□ 1.32
SHOX-204ENST00000554971 CNGB1Q14028 1251 aaPredicted RBP23.28■■□□□ 1.32
SHOX-204ENST00000554971 PEAK1Q9H792 1746 aa23.28■■□□□ 1.32
SHOX-204ENST00000554971 PRDM11Q9NQV5 511 aa23.27■■□□□ 1.32
SHOX-204ENST00000554971 SLIT2O94813 1529 aa23.27■■□□□ 1.32
SHOX-204ENST00000554971 NWD2Q9ULI1 1742 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms