RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ERCC3P19447 782 aa9.32□□□□□ -0.92
SCFD1-208ENST00000553278 LYPD8Q6UX82 237 aa9.32□□□□□ -0.92
SCFD1-208ENST00000553278 TXNDC2Q86VQ3 553 aa9.32□□□□□ -0.92
SCFD1-208ENST00000553278 PLEKHM2Q8IWE5 1019 aa9.32□□□□□ -0.92
SCFD1-208ENST00000553278 STK32AQ8WU08 396 aa9.32□□□□□ -0.92
SCFD1-208ENST00000553278 LOC105371045A0A1W2PR82 267 aa9.31□□□□□ -0.92
SCFD1-208ENST00000553278 HOXB1P14653 301 aaPredicted RBP9.31□□□□□ -0.92
SCFD1-208ENST00000553278 ARID4AP29374 1257 aaPredicted RBP9.31□□□□□ -0.92
SCFD1-208ENST00000553278 ZNF592Q92610 1267 aa9.31□□□□□ -0.92
SCFD1-208ENST00000553278 RBM47A0AV96 593 aaKnown RBP9.3□□□□□ -0.92
SCFD1-208ENST00000553278 FAM196BA6NMK8 535 aa9.3□□□□□ -0.92
SCFD1-208ENST00000553278 USP17L5A8MUK1 530 aa9.3□□□□□ -0.92
SCFD1-208ENST00000553278 PIK3CDO00329 1044 aa9.3□□□□□ -0.92
SCFD1-208ENST00000553278 RNF40O75150 1001 aa9.3□□□□□ -0.92
SCFD1-208ENST00000553278 SAMD7Q7Z3H4 446 aa9.3□□□□□ -0.92
SCFD1-208ENST00000553278 SLC4A5Q9BY07 1137 aa9.3□□□□□ -0.92
SCFD1-208ENST00000553278 FKBPLQ9UIM3 349 aa9.3□□□□□ -0.92
SCFD1-208ENST00000553278 ZC3H4Q9UPT8 1303 aaKnown RBP9.3□□□□□ -0.92
SCFD1-208ENST00000553278 LARP1Q6PKG0 1096 aaKnown RBP9.29□□□□□ -0.92
SCFD1-208ENST00000553278 MORN1Q5T089 497 aa9.28□□□□□ -0.92
SCFD1-208ENST00000553278 RNF166Q96A37 237 aaPredicted RBP9.28□□□□□ -0.92
SCFD1-208ENST00000553278 USP17L15C9J2P7 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L10C9JJH3 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L13C9JLJ4 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L12C9JPN9 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L11C9JVI0 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L21D6R901 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L18D6R9N7 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L22D6RA61 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L17D6RBQ6 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L19D6RCP7 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L20D6RJB6 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 SSFA2P28290 1259 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 PSEN2P49810 448 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 USP17L24Q0WX57 530 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 PHLDB3Q6NSJ2 640 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 FAM200AQ8TCP9 573 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 MKRN1Q9UHC7 482 aaKnown RBP9.27□□□□□ -0.93
SCFD1-208ENST00000553278 SLC27A5Q9Y2P5 690 aa9.27□□□□□ -0.93
SCFD1-208ENST00000553278 ATP5J2-PTCD1G3V325 749 aa9.26□□□□□ -0.93
SCFD1-208ENST00000553278 LAPTM4BQ86VI4 370 aa9.26□□□□□ -0.93
SCFD1-208ENST00000553278 CDCA7Q9BWT1 371 aaPredicted RBP9.26□□□□□ -0.93
SCFD1-208ENST00000553278 UNCXA6NJT0 531 aa9.25□□□□□ -0.93
SCFD1-208ENST00000553278 ARHGAP33O14559 1287 aa9.25□□□□□ -0.93
SCFD1-208ENST00000553278 LZTS3O60299 673 aaPredicted RBP9.25□□□□□ -0.93
SCFD1-208ENST00000553278 RASA1P20936 1047 aa9.25□□□□□ -0.93
SCFD1-208ENST00000553278 SLFNL1Q499Z3 407 aa9.25□□□□□ -0.93
SCFD1-208ENST00000553278 DEPDC4Q8N2C3 294 aa9.25□□□□□ -0.93
SCFD1-208ENST00000553278 ACTN4O43707 911 aaKnown RBP9.24□□□□□ -0.93
SCFD1-208ENST00000553278 MCCD1P59942 119 aaPredicted RBP9.24□□□□□ -0.93
SCFD1-208ENST00000553278 PUS10Q3MIT2 529 aaKnown RBP9.24□□□□□ -0.93
SCFD1-208ENST00000553278 CRTC2Q53ET0 693 aaPredicted RBP9.24□□□□□ -0.93
SCFD1-208ENST00000553278 CLP1Q92989 425 aaKnown RBP9.24□□□□□ -0.93
SCFD1-208ENST00000553278 USB1Q9BQ65 265 aaKnown RBP9.24□□□□□ -0.93
SCFD1-208ENST00000553278 PRR14Q9BWN1 585 aa9.24□□□□□ -0.93
SCFD1-208ENST00000553278 PTK7Q13308 1070 aa9.23□□□□□ -0.93
SCFD1-208ENST00000553278 FAM174AQ8TBP5 190 aa9.23□□□□□ -0.93
SCFD1-208ENST00000553278 NBPF3Q9H094 633 aa9.23□□□□□ -0.93
SCFD1-208ENST00000553278 SOWAHDA6NJG2 315 aa9.22□□□□□ -0.93
SCFD1-208ENST00000553278 F12P00748 615 aaPredicted RBP9.22□□□□□ -0.93
SCFD1-208ENST00000553278 ATP2B4P23634 1241 aa9.22□□□□□ -0.93
SCFD1-208ENST00000553278 NCOA4Q13772 614 aa9.22□□□□□ -0.93
SCFD1-208ENST00000553278 RNF135Q8IUD6 432 aa9.22□□□□□ -0.93
SCFD1-208ENST00000553278 CEP126Q9P2H0 1117 aa9.22□□□□□ -0.93
SCFD1-208ENST00000553278 GPSM3Q9Y4H4 160 aa9.22□□□□□ -0.93
SCFD1-208ENST00000553278 PTK2Q05397 1052 aa9.21□□□□□ -0.94
SCFD1-208ENST00000553278 DNAJC14Q6Y2X3 702 aaPredicted RBP9.21□□□□□ -0.94
SCFD1-208ENST00000553278 ANKMY2Q8IV38 441 aa9.21□□□□□ -0.94
SCFD1-208ENST00000553278 USP35Q9P2H5 1018 aa9.21□□□□□ -0.94
SCFD1-208ENST00000553278 SALL2Q9Y467 1007 aaPredicted RBP9.21□□□□□ -0.94
SCFD1-208ENST00000553278 FAM69CQ0P6D2 419 aa9.2□□□□□ -0.94
SCFD1-208ENST00000553278 PTPRNQ16849 979 aa9.2□□□□□ -0.94
SCFD1-208ENST00000553278 RNF19BQ6ZMZ0 732 aa9.2□□□□□ -0.94
SCFD1-208ENST00000553278 PLPP7Q8NBV4 271 aa9.2□□□□□ -0.94
SCFD1-208ENST00000553278 ARMC2Q8NEN0 867 aa9.2□□□□□ -0.94
SCFD1-208ENST00000553278 SIRT1Q96EB6 747 aa9.2□□□□□ -0.94
SCFD1-208ENST00000553278 MAP10Q9P2G4 905 aa9.2□□□□□ -0.94
SCFD1-208ENST00000553278 CTHP32929 405 aa9.19□□□□□ -0.94
SCFD1-208ENST00000553278 MARSP56192 900 aaKnown RBP9.19□□□□□ -0.94
SCFD1-208ENST00000553278 SWI5Q1ZZU3 235 aa9.19□□□□□ -0.94
SCFD1-208ENST00000553278 EML3Q32P44 896 aa9.19□□□□□ -0.94
SCFD1-208ENST00000553278 BRICD5Q6PL45 260 aa9.19□□□□□ -0.94
SCFD1-208ENST00000553278 BLOC1S3Q6QNY0 202 aa9.19□□□□□ -0.94
SCFD1-208ENST00000553278 GPKOWQ92917 476 aaPredicted RBP eCLIP9.19□□□□□ -0.94
SCFD1-208ENST00000553278 VPS9D1Q9Y2B5 631 aa9.19□□□□□ -0.94
SCFD1-208ENST00000553278 PCDHB9Q9Y5E1 797 aa9.19□□□□□ -0.94
SCFD1-208ENST00000553278 JUNDP17535 347 aa9.18□□□□□ -0.94
SCFD1-208ENST00000553278 MAP7D1Q3KQU3 841 aa9.18□□□□□ -0.94
SCFD1-208ENST00000553278 DMRTA1Q5VZB9 504 aa9.18□□□□□ -0.94
SCFD1-208ENST00000553278 TRIM50Q86XT4 487 aa9.18□□□□□ -0.94
SCFD1-208ENST00000553278 MRRFQ96E11 262 aaKnown RBP9.18□□□□□ -0.94
SCFD1-208ENST00000553278 ZFRQ96KR1 1074 aaKnown RBP9.18□□□□□ -0.94
SCFD1-208ENST00000553278 BCL2L13Q9BXK5 485 aa9.18□□□□□ -0.94
SCFD1-208ENST00000553278 SLAIN2Q9P270 581 aa9.18□□□□□ -0.94
SCFD1-208ENST00000553278 BIN2Q9UBW5 565 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-208ENST00000553278 FMNL1O95466 1100 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-208ENST00000553278 ATP1A2P50993 1020 aa9.17□□□□□ -0.94
SCFD1-208ENST00000553278 DPYDQ12882 1025 aa9.17□□□□□ -0.94
SCFD1-208ENST00000553278 PDXDC2PQ6P474 469 aa9.17□□□□□ -0.94
SCFD1-208ENST00000553278 OGFOD1Q8N543 542 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms