RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 NECTIN2Q92692 538 aa17.28■□□□□ 0.36
PRPF40B-209ENST00000548825 SLC26A8Q96RN1 970 aa17.28■□□□□ 0.36
PRPF40B-209ENST00000548825 MIS18AQ9NYP9 233 aa17.28■□□□□ 0.36
PRPF40B-209ENST00000548825 MROH2AA6NES4 1674 aa17.28■□□□□ 0.36
PRPF40B-209ENST00000548825 KRT24Q2M2I5 525 aa17.27■□□□□ 0.36
PRPF40B-209ENST00000548825 NGEFQ8N5V2 710 aa17.27■□□□□ 0.36
PRPF40B-209ENST00000548825 KIDINS220Q9ULH0 1771 aa17.27■□□□□ 0.36
PRPF40B-209ENST00000548825 MYOM2P54296 1465 aa17.27■□□□□ 0.35
PRPF40B-209ENST00000548825 INO80Q9ULG1 1556 aaPredicted RBP17.27■□□□□ 0.35
PRPF40B-209ENST00000548825 POLKQ9UBT6 870 aa17.26■□□□□ 0.35
PRPF40B-209ENST00000548825 DDX19BQ9UMR2 479 aa17.26■□□□□ 0.35
PRPF40B-209ENST00000548825 USP35Q9P2H5 1018 aa17.26■□□□□ 0.35
PRPF40B-209ENST00000548825 CEBPAP49715 358 aaPredicted RBP17.26■□□□□ 0.35
PRPF40B-209ENST00000548825 COG3Q96JB2 828 aa17.25■□□□□ 0.35
PRPF40B-209ENST00000548825 IPO8O15397 1037 aaKnown RBP17.25■□□□□ 0.35
PRPF40B-209ENST00000548825 LTV1Q96GA3 475 aaPredicted RBP17.25■□□□□ 0.35
PRPF40B-209ENST00000548825 MYOM1P52179 1685 aa17.24■□□□□ 0.35
PRPF40B-209ENST00000548825 AEBP1Q8IUX7 1158 aa17.24■□□□□ 0.35
PRPF40B-209ENST00000548825 MROH1Q8NDA8 1641 aa17.23■□□□□ 0.35
PRPF40B-209ENST00000548825 SLC4A10Q6U841 1118 aa17.23■□□□□ 0.35
PRPF40B-209ENST00000548825 RBM33Q96EV2 1170 aaKnown RBP17.23■□□□□ 0.35
PRPF40B-209ENST00000548825 C22orf23Q9BZE7 217 aa17.23■□□□□ 0.35
PRPF40B-209ENST00000548825 ATAD2Q6PL18 1390 aa17.23■□□□□ 0.35
PRPF40B-209ENST00000548825 ABCA9Q8IUA7 1624 aa17.22■□□□□ 0.35
PRPF40B-209ENST00000548825 SULT6B1Q6IMI4 303 aa17.22■□□□□ 0.35
PRPF40B-209ENST00000548825 MCM10Q7L590 875 aa17.22■□□□□ 0.35
PRPF40B-209ENST00000548825 PLEKHF1Q96S99 279 aa17.22■□□□□ 0.35
PRPF40B-209ENST00000548825 TBC1D2Q9BYX2 928 aa17.22■□□□□ 0.35
PRPF40B-209ENST00000548825 NUDT16Q96DE0 195 aaKnown RBP17.22■□□□□ 0.35
PRPF40B-209ENST00000548825 USP19O94966 1318 aa17.22■□□□□ 0.35
PRPF40B-209ENST00000548825 SBNO2Q9Y2G9 1366 aa17.22■□□□□ 0.35
PRPF40B-209ENST00000548825 EIF5BO60841 1220 aaKnown RBP17.21■□□□□ 0.34
PRPF40B-209ENST00000548825 YTHDC2Q9H6S0 1430 aaKnown RBP17.2■□□□□ 0.34
PRPF40B-209ENST00000548825 ABCC3O15438 1527 aa17.2■□□□□ 0.34
PRPF40B-209ENST00000548825 TWISTNBQ3B726 338 aaPredicted RBP17.19■□□□□ 0.34
PRPF40B-209ENST00000548825 ZNF428Q96B54 188 aa17.19■□□□□ 0.34
PRPF40B-209ENST00000548825 PNNQ9H307 717 aaKnown RBP17.19■□□□□ 0.34
PRPF40B-209ENST00000548825 C8orf58Q8NAV2 365 aa17.19■□□□□ 0.34
PRPF40B-209ENST00000548825 MBIPQ9NS73 344 aa17.18■□□□□ 0.34
PRPF40B-209ENST00000548825 CCDC27Q2M243 656 aa17.18■□□□□ 0.34
PRPF40B-209ENST00000548825 ADGRB3O60242 1522 aa17.18■□□□□ 0.34
PRPF40B-209ENST00000548825 FCHSD2O94868 740 aa17.18■□□□□ 0.34
PRPF40B-209ENST00000548825 TPRNQ4KMQ1 711 aa17.17■□□□□ 0.34
PRPF40B-209ENST00000548825 TULP4Q9NRJ4 1543 aa17.17■□□□□ 0.34
PRPF40B-209ENST00000548825 QRICH2Q9H0J4 1663 aa17.17■□□□□ 0.34
PRPF40B-209ENST00000548825 ARAP3Q8WWN8 1544 aa17.17■□□□□ 0.34
PRPF40B-209ENST00000548825 HSCBQ8IWL3 235 aa17.17■□□□□ 0.34
PRPF40B-209ENST00000548825 DEPDC5O75140 1603 aa17.16■□□□□ 0.34
PRPF40B-209ENST00000548825 HSP90AB1P08238 724 aaKnown RBP17.16■□□□□ 0.34
PRPF40B-209ENST00000548825 VWDEQ8N2E2 1590 aa17.16■□□□□ 0.34
PRPF40B-209ENST00000548825 KIF16BQ96L93 1317 aa17.16■□□□□ 0.34
PRPF40B-209ENST00000548825 ABCC11Q96J66 1382 aa17.16■□□□□ 0.34
PRPF40B-209ENST00000548825 WASLO00401 505 aaPredicted RBP17.16■□□□□ 0.34
PRPF40B-209ENST00000548825 NFE2L2Q16236 605 aa17.16■□□□□ 0.34
PRPF40B-209ENST00000548825 PHF23Q9BUL5 403 aaPredicted RBP17.16■□□□□ 0.34
PRPF40B-209ENST00000548825 RSPH6AQ9H0K4 717 aa17.16■□□□□ 0.34
PRPF40B-209ENST00000548825 MLH3Q9UHC1 1453 aa17.15■□□□□ 0.34
PRPF40B-209ENST00000548825 TBC1D32Q96NH3 1257 aa17.15■□□□□ 0.34
PRPF40B-209ENST00000548825 HSP90AB2PQ58FF8 381 aa17.15■□□□□ 0.34
PRPF40B-209ENST00000548825 FRMPD1Q5SYB0 1578 aa17.14■□□□□ 0.34
PRPF40B-209ENST00000548825 ADGRB1O14514 1584 aa17.14■□□□□ 0.33
PRPF40B-209ENST00000548825 GLI2P10070 1586 aa17.14■□□□□ 0.33
PRPF40B-209ENST00000548825 NGDNQ8NEJ9 315 aaKnown RBP17.14■□□□□ 0.33
PRPF40B-209ENST00000548825 RBM42Q9BTD8 480 aaKnown RBP17.13■□□□□ 0.33
PRPF40B-209ENST00000548825 CCDC61Q9Y6R9 512 aa17.13■□□□□ 0.33
PRPF40B-209ENST00000548825 FOXO3O43524 673 aa17.13■□□□□ 0.33
PRPF40B-209ENST00000548825 LMOD2Q6P5Q4 547 aa17.13■□□□□ 0.33
PRPF40B-209ENST00000548825 CHD1LQ86WJ1 897 aa17.13■□□□□ 0.33
PRPF40B-209ENST00000548825 ANO8Q9HCE9 1232 aaPredicted RBP17.13■□□□□ 0.33
PRPF40B-209ENST00000548825 HECW2Q9P2P5 1572 aa17.13■□□□□ 0.33
PRPF40B-209ENST00000548825 SMARCA5O60264 1052 aaPredicted RBP17.13■□□□□ 0.33
PRPF40B-209ENST00000548825 ZBTB40Q9NUA8 1239 aa17.13■□□□□ 0.33
PRPF40B-209ENST00000548825 GNAI1P63096 354 aa17.12■□□□□ 0.33
PRPF40B-209ENST00000548825 C16orf71Q8IYS4 520 aaPredicted RBP17.12■□□□□ 0.33
PRPF40B-209ENST00000548825 VAMP4O75379 141 aa17.12■□□□□ 0.33
PRPF40B-209ENST00000548825 NINLQ9Y2I6 1382 aa17.12■□□□□ 0.33
PRPF40B-209ENST00000548825 F6X3S4 739 aa17.11■□□□□ 0.33
PRPF40B-209ENST00000548825 NSD2O96028 1365 aa17.1■□□□□ 0.33
PRPF40B-209ENST00000548825 METP08581 1390 aa17.1■□□□□ 0.33
PRPF40B-209ENST00000548825 AMPHP49418 695 aa17.1■□□□□ 0.33
PRPF40B-209ENST00000548825 FOXD4L5Q5VV16 416 aaPredicted RBP17.1■□□□□ 0.33
PRPF40B-209ENST00000548825 NOL8Q76FK4 1167 aaKnown RBP17.1■□□□□ 0.33
PRPF40B-209ENST00000548825 FOXD4L4Q8WXT5 416 aaPredicted RBP17.1■□□□□ 0.33
PRPF40B-209ENST00000548825 TSPOAP1O95153 1857 aa17.09■□□□□ 0.33
PRPF40B-209ENST00000548825 NRXN1Q9ULB1 1477 aa17.09■□□□□ 0.33
PRPF40B-209ENST00000548825 PPIP5K1Q6PFW1 1433 aa17.09■□□□□ 0.33
PRPF40B-209ENST00000548825 TSHZ3Q63HK5 1081 aa17.08■□□□□ 0.33
PRPF40B-209ENST00000548825 RTF1Q92541 710 aaKnown RBP17.08■□□□□ 0.32
PRPF40B-209ENST00000548825 RIMS2Q9UQ26 1411 aa17.07■□□□□ 0.32
PRPF40B-209ENST00000548825 CAMSAP1Q5T5Y3 1602 aa17.07■□□□□ 0.32
PRPF40B-209ENST00000548825 NCLP19338 710 aaKnown RBP17.07■□□□□ 0.32
PRPF40B-209ENST00000548825 IL13P35225 146 aa17.07■□□□□ 0.32
PRPF40B-209ENST00000548825 SLC4A2P04920 1241 aa17.06■□□□□ 0.32
PRPF40B-209ENST00000548825 OTUD7AQ8TE49 926 aaPredicted RBP17.06■□□□□ 0.32
PRPF40B-209ENST00000548825 MRPL50Q8N5N7 158 aaKnown RBP17.06■□□□□ 0.32
PRPF40B-209ENST00000548825 CALD1Q05682 793 aaKnown RBP17.06■□□□□ 0.32
PRPF40B-209ENST00000548825 ACEP12821 1306 aa17.05■□□□□ 0.32
PRPF40B-209ENST00000548825 USHBP1Q8N6Y0 703 aa17.05■□□□□ 0.32
PRPF40B-209ENST00000548825 HDAC1Q13547 482 aaPredicted RBP17.05■□□□□ 0.32
PRPF40B-209ENST00000548825 EIF4A2Q14240 407 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 135.6 ms