RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SIN3AQ96ST3 1273 aa7.5□□□□□ -1.21
LIMA1-203ENST00000547825 CNTLNQ9NXG0 1405 aa7.5□□□□□ -1.21
LIMA1-203ENST00000547825 GALR2O43603 387 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-203ENST00000547825 TMEM92Q6UXU6 159 aa7.49□□□□□ -1.21
LIMA1-203ENST00000547825 CLSPNQ9HAW4 1339 aa7.49□□□□□ -1.21
LIMA1-203ENST00000547825 KIF3CO14782 793 aa7.49□□□□□ -1.21
LIMA1-203ENST00000547825 ZNF326Q5BKZ1 582 aaKnown RBP7.49□□□□□ -1.21
LIMA1-203ENST00000547825 NRXN3Q9Y4C0 1643 aa7.49□□□□□ -1.21
LIMA1-203ENST00000547825 LTBP4Q8N2S1 1624 aa7.49□□□□□ -1.21
LIMA1-203ENST00000547825 NECTIN2Q92692 538 aa7.49□□□□□ -1.21
LIMA1-203ENST00000547825 ALKQ9UM73 1620 aa7.49□□□□□ -1.21
LIMA1-203ENST00000547825 SLIT1O75093 1534 aa7.48□□□□□ -1.21
LIMA1-203ENST00000547825 NLRP7Q8WX94 980 aa7.48□□□□□ -1.21
LIMA1-203ENST00000547825 PHOX2BQ99453 314 aa7.48□□□□□ -1.21
LIMA1-203ENST00000547825 PLA2R1Q13018 1463 aa7.48□□□□□ -1.21
LIMA1-203ENST00000547825 MED14O60244 1454 aa7.47□□□□□ -1.21
LIMA1-203ENST00000547825 ANP32AP39687 249 aaKnown RBP7.47□□□□□ -1.21
LIMA1-203ENST00000547825 SALL2Q9Y467 1007 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-203ENST00000547825 ARHGAP23Q9P227 1491 aa7.47□□□□□ -1.21
LIMA1-203ENST00000547825 HIC1Q14526 733 aa7.47□□□□□ -1.21
LIMA1-203ENST00000547825 AFAP1Q8N556 730 aa7.47□□□□□ -1.21
LIMA1-203ENST00000547825 POM121Q96HA1 1249 aa7.47□□□□□ -1.21
LIMA1-203ENST00000547825 RBM19Q9Y4C8 960 aaKnown RBP7.47□□□□□ -1.21
LIMA1-203ENST00000547825 TIE1P35590 1138 aa7.47□□□□□ -1.21
LIMA1-203ENST00000547825 PTGDRQ13258 359 aa7.46□□□□□ -1.21
LIMA1-203ENST00000547825 CDHR5Q9HBB8 845 aa7.46□□□□□ -1.21
LIMA1-203ENST00000547825 PPLO60437 1756 aa7.46□□□□□ -1.21
LIMA1-203ENST00000547825 RPRD2Q5VT52 1461 aaKnown RBP7.46□□□□□ -1.21
LIMA1-203ENST00000547825 NWD1Q149M9 1564 aa7.46□□□□□ -1.21
LIMA1-203ENST00000547825 PPP1R15AO75807 674 aaPredicted RBP7.46□□□□□ -1.21
LIMA1-203ENST00000547825 FAM161AQ3B820 660 aa7.46□□□□□ -1.21
LIMA1-203ENST00000547825 RSPH4AQ5TD94 716 aa7.46□□□□□ -1.21
LIMA1-203ENST00000547825 IQGAP1P46940 1657 aa7.46□□□□□ -1.22
LIMA1-203ENST00000547825 NOS1P29475 1434 aa7.46□□□□□ -1.22
LIMA1-203ENST00000547825 CHD2O14647 1828 aaKnown RBP7.45□□□□□ -1.22
LIMA1-203ENST00000547825 ERVK-7P63135 1459 aa7.45□□□□□ -1.22
LIMA1-203ENST00000547825 FCHSD2O94868 740 aa7.44□□□□□ -1.22
LIMA1-203ENST00000547825 MCM6Q14566 821 aa7.44□□□□□ -1.22
LIMA1-203ENST00000547825 ZNF777Q9ULD5 760 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-203ENST00000547825 TRAK2O60296 914 aa7.44□□□□□ -1.22
LIMA1-203ENST00000547825 FLIIQ13045 1269 aa7.44□□□□□ -1.22
LIMA1-203ENST00000547825 ADGRB3O60242 1522 aa7.43□□□□□ -1.22
LIMA1-203ENST00000547825 A2ML1A8K2U0 1454 aa7.43□□□□□ -1.22
LIMA1-203ENST00000547825 ATN1P54259 1190 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-203ENST00000547825 TMEM121BQ9BXQ6 578 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-203ENST00000547825 CLTCL1P53675 1640 aa7.43□□□□□ -1.22
LIMA1-203ENST00000547825 PROCA1Q8NCQ7 364 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-203ENST00000547825 BOLA1Q9Y3E2 137 aa7.43□□□□□ -1.22
LIMA1-203ENST00000547825 OXER1Q8TDS5 423 aa7.43□□□□□ -1.22
LIMA1-203ENST00000547825 PTPRTO14522 1441 aa7.42□□□□□ -1.22
LIMA1-203ENST00000547825 HNRNPMP52272 730 aaKnown RBP eCLIP7.42□□□□□ -1.22
LIMA1-203ENST00000547825 TRPM2O94759 1503 aa7.42□□□□□ -1.22
LIMA1-203ENST00000547825 NPDC1Q9NQX5 325 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-203ENST00000547825 NLRP1Q9C000 1473 aa7.42□□□□□ -1.22
LIMA1-203ENST00000547825 KIF1BO60333 1816 aa7.42□□□□□ -1.22
LIMA1-203ENST00000547825 IQSEC2Q5JU85 1478 aa7.42□□□□□ -1.22
LIMA1-203ENST00000547825 IRX5P78411 483 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-203ENST00000547825 MDM2Q00987 491 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-203ENST00000547825 FBXO31Q5XUX0 539 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-203ENST00000547825 XRN1Q8IZH2 1706 aaKnown RBP7.41□□□□□ -1.22
LIMA1-203ENST00000547825 CFDP1Q9UEE9 299 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-203ENST00000547825 LAMC1P11047 1609 aa7.41□□□□□ -1.22
LIMA1-203ENST00000547825 HFM1A2PYH4 1435 aa7.41□□□□□ -1.22
LIMA1-203ENST00000547825 NAIPQ13075 1403 aa7.41□□□□□ -1.22
LIMA1-203ENST00000547825 KNDC1Q76NI1 1749 aa7.41□□□□□ -1.22
LIMA1-203ENST00000547825 CCDC136Q96JN2 1154 aa7.41□□□□□ -1.22
LIMA1-203ENST00000547825 GOPCQ9HD26 462 aa7.4□□□□□ -1.22
LIMA1-203ENST00000547825 POLR3EQ9NVU0 708 aa7.4□□□□□ -1.22
LIMA1-203ENST00000547825 PRAG1Q86YV5 1406 aa7.4□□□□□ -1.22
LIMA1-203ENST00000547825 C19orf67A6NJJ6 358 aa7.4□□□□□ -1.23
LIMA1-203ENST00000547825 EVI5O60447 810 aa7.4□□□□□ -1.23
LIMA1-203ENST00000547825 DEKP35659 375 aaKnown RBP7.39□□□□□ -1.23
LIMA1-203ENST00000547825 B4GALNT3Q6L9W6 998 aa7.39□□□□□ -1.23
LIMA1-203ENST00000547825 SPAG9O60271 1321 aaKnown RBP7.39□□□□□ -1.23
LIMA1-203ENST00000547825 ZMYM3Q14202 1370 aa7.39□□□□□ -1.23
LIMA1-203ENST00000547825 PTGER2P43116 358 aa7.39□□□□□ -1.23
LIMA1-203ENST00000547825 TSR1Q2NL82 804 aaKnown RBP7.39□□□□□ -1.23
LIMA1-203ENST00000547825 CCDC184Q52MB2 194 aa7.39□□□□□ -1.23
LIMA1-203ENST00000547825 PCMTD1Q96MG8 357 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-203ENST00000547825 SETBP1Q9Y6X0 1596 aa7.39□□□□□ -1.23
LIMA1-203ENST00000547825 CFAP65Q6ZU64 1925 aaKnown RBP7.39□□□□□ -1.23
LIMA1-203ENST00000547825 ZFYVE9O95405 1425 aa7.39□□□□□ -1.23
LIMA1-203ENST00000547825 SETD5Q9C0A6 1442 aa7.39□□□□□ -1.23
LIMA1-203ENST00000547825 PDIA4P13667 645 aaKnown RBP7.38□□□□□ -1.23
LIMA1-203ENST00000547825 NEXMIFQ5QGS0 1516 aa7.38□□□□□ -1.23
LIMA1-203ENST00000547825 DIP2AQ14689 1571 aa7.38□□□□□ -1.23
LIMA1-203ENST00000547825 EVX2Q03828 476 aa7.38□□□□□ -1.23
LIMA1-203ENST00000547825 A6NJR5 290 aa7.38□□□□□ -1.23
LIMA1-203ENST00000547825 RBM33Q96EV2 1170 aaKnown RBP7.37□□□□□ -1.23
LIMA1-203ENST00000547825 KIF15Q9NS87 1388 aa7.37□□□□□ -1.23
LIMA1-203ENST00000547825 TMUB1Q9BVT8 246 aa7.37□□□□□ -1.23
LIMA1-203ENST00000547825 MRS2Q9HD23 443 aa7.37□□□□□ -1.23
LIMA1-203ENST00000547825 LAS1LQ9Y4W2 734 aaKnown RBP7.37□□□□□ -1.23
LIMA1-203ENST00000547825 BEGAINQ9BUH8 593 aa7.36□□□□□ -1.23
LIMA1-203ENST00000547825 SSTR3P32745 418 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-203ENST00000547825 FNBP4Q8N3X1 1017 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-203ENST00000547825 SH3D19Q5HYK7 790 aa7.35□□□□□ -1.23
LIMA1-203ENST00000547825 OCEL1Q9H607 264 aa7.35□□□□□ -1.23
LIMA1-203ENST00000547825 NRXN1Q9ULB1 1477 aa7.35□□□□□ -1.23
LIMA1-203ENST00000547825 PROSER2Q86WR7 435 aaPredicted RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms