RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 DUOX2Q9NRD8 1548 aa19.28■□□□□ 0.68
CUX1-211ENST00000546411 FAM83GA6ND36 823 aa19.27■□□□□ 0.68
CUX1-211ENST00000546411 CHD1LQ86WJ1 897 aa19.27■□□□□ 0.68
CUX1-211ENST00000546411 ARID3AQ99856 593 aa19.27■□□□□ 0.68
CUX1-211ENST00000546411 ASXL2Q76L83 1435 aa19.27■□□□□ 0.68
CUX1-211ENST00000546411 FYB1O15117 783 aa19.27■□□□□ 0.67
CUX1-211ENST00000546411 CDC45O75419 566 aa19.27■□□□□ 0.67
CUX1-211ENST00000546411 INTS3Q68E01 1043 aaKnown RBP19.26■□□□□ 0.67
CUX1-211ENST00000546411 RLBP1P12271 317 aa19.26■□□□□ 0.67
CUX1-211ENST00000546411 XPCQ01831 940 aaPredicted RBP19.25■□□□□ 0.67
CUX1-211ENST00000546411 ESCO1Q5FWF5 840 aa19.25■□□□□ 0.67
CUX1-211ENST00000546411 GPATCH3Q96I76 525 aa19.25■□□□□ 0.67
CUX1-211ENST00000546411 GORABQ5T7V8 394 aa19.25■□□□□ 0.67
CUX1-211ENST00000546411 ZNF692Q9BU19 519 aaPredicted RBP19.25■□□□□ 0.67
CUX1-211ENST00000546411 CHMP4AQ9BY43 222 aa19.25■□□□□ 0.67
CUX1-211ENST00000546411 ADGRL2O95490 1459 aa19.25■□□□□ 0.67
CUX1-211ENST00000546411 UHRF1BP1Q6BDS2 1440 aa19.24■□□□□ 0.67
CUX1-211ENST00000546411 CEP170Q5SW79 1584 aa19.24■□□□□ 0.67
CUX1-211ENST00000546411 ZRANB1Q9UGI0 708 aa19.24■□□□□ 0.67
CUX1-211ENST00000546411 UBTFL1P0CB47 393 aaPredicted RBP19.24■□□□□ 0.67
CUX1-211ENST00000546411 SURF6O75683 361 aaKnown RBP19.23■□□□□ 0.67
CUX1-211ENST00000546411 CT47B1P0C2W7 299 aaPredicted RBP19.23■□□□□ 0.67
CUX1-211ENST00000546411 SHANK2Q9UPX8 1470 aa19.23■□□□□ 0.67
CUX1-211ENST00000546411 NPHP1O15259 732 aa19.23■□□□□ 0.67
CUX1-211ENST00000546411 DIAPH3Q9NSV4 1193 aa19.23■□□□□ 0.67
CUX1-211ENST00000546411 MCTP1Q6DN14 999 aa19.22■□□□□ 0.67
CUX1-211ENST00000546411 NLRP2Q9NX02 1062 aa19.22■□□□□ 0.67
CUX1-211ENST00000546411 ARHGEF12Q9NZN5 1544 aa19.22■□□□□ 0.67
CUX1-211ENST00000546411 ASXL1Q8IXJ9 1541 aa19.22■□□□□ 0.67
CUX1-211ENST00000546411 TRAK2O60296 914 aa19.21■□□□□ 0.67
CUX1-211ENST00000546411 GCC1Q96CN9 775 aa19.21■□□□□ 0.67
CUX1-211ENST00000546411 HSP90B1P14625 803 aaKnown RBP19.21■□□□□ 0.66
CUX1-211ENST00000546411 HDGFL1Q5TGJ6 251 aa19.2■□□□□ 0.66
CUX1-211ENST00000546411 NINLQ9Y2I6 1382 aa19.2■□□□□ 0.66
CUX1-211ENST00000546411 WASLO00401 505 aaPredicted RBP19.2■□□□□ 0.66
CUX1-211ENST00000546411 TAF7LQ5H9L4 462 aa19.2■□□□□ 0.66
CUX1-211ENST00000546411 DRC7Q8IY82 874 aa19.2■□□□□ 0.66
CUX1-211ENST00000546411 NCKAP5LQ9HCH0 1330 aa19.2■□□□□ 0.66
CUX1-211ENST00000546411 F6X3S4 739 aa19.2■□□□□ 0.66
CUX1-211ENST00000546411 PTMSP20962 102 aa19.2■□□□□ 0.66
CUX1-211ENST00000546411 SMARCA5O60264 1052 aaPredicted RBP19.19■□□□□ 0.66
CUX1-211ENST00000546411 NEK4P51957 841 aa19.19■□□□□ 0.66
CUX1-211ENST00000546411 GAS2L2Q8NHY3 880 aa19.19■□□□□ 0.66
CUX1-211ENST00000546411 COL17A1Q9UMD9 1497 aaPredicted RBP19.19■□□□□ 0.66
CUX1-211ENST00000546411 EXOC6BQ9Y2D4 811 aa19.19■□□□□ 0.66
CUX1-211ENST00000546411 IFIT2P09913 472 aaKnown RBP19.19■□□□□ 0.66
CUX1-211ENST00000546411 HDAC5Q9UQL6 1122 aa19.18■□□□□ 0.66
CUX1-211ENST00000546411 CCDC30Q5VVM6 783 aa19.18■□□□□ 0.66
CUX1-211ENST00000546411 DENND4BO75064 1496 aaPredicted RBP19.18■□□□□ 0.66
CUX1-211ENST00000546411 USHBP1Q8N6Y0 703 aa19.17■□□□□ 0.66
CUX1-211ENST00000546411 NEXNQ0ZGT2 675 aa19.17■□□□□ 0.66
CUX1-211ENST00000546411 IL1RAPL2Q9NP60 686 aa19.17■□□□□ 0.66
CUX1-211ENST00000546411 MAP4K4O95819 1239 aaPredicted RBP19.17■□□□□ 0.66
CUX1-211ENST00000546411 TTC5Q8N0Z6 440 aa19.17■□□□□ 0.66
CUX1-211ENST00000546411 MBD5Q9P267 1494 aa19.17■□□□□ 0.66
CUX1-211ENST00000546411 GCC2Q8IWJ2 1684 aa19.16■□□□□ 0.66
CUX1-211ENST00000546411 CFAP65Q6ZU64 1925 aaKnown RBP19.16■□□□□ 0.66
CUX1-211ENST00000546411 RAPGEF4Q8WZA2 1011 aa19.15■□□□□ 0.66
CUX1-211ENST00000546411 WDR7Q9Y4E6 1490 aa19.15■□□□□ 0.66
CUX1-211ENST00000546411 GNAI2P04899 355 aa19.15■□□□□ 0.66
CUX1-211ENST00000546411 SYAP1Q96A49 352 aaPredicted RBP19.15■□□□□ 0.66
CUX1-211ENST00000546411 GNAI3P08754 354 aa19.15■□□□□ 0.66
CUX1-211ENST00000546411 C8orf34Q49A92 452 aa19.15■□□□□ 0.66
CUX1-211ENST00000546411 TBC1D2Q9BYX2 928 aa19.15■□□□□ 0.66
CUX1-211ENST00000546411 SEC24BO95487 1268 aa19.14■□□□□ 0.65
CUX1-211ENST00000546411 THEMISQ8N1K5 641 aaPredicted RBP19.14■□□□□ 0.65
CUX1-211ENST00000546411 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.14■□□□□ 0.65
CUX1-211ENST00000546411 ABCC10Q5T3U5 1492 aa19.14■□□□□ 0.65
CUX1-211ENST00000546411 MBIPQ9NS73 344 aa19.13■□□□□ 0.65
CUX1-211ENST00000546411 SKOR2Q2VWA4 1001 aaPredicted RBP19.13■□□□□ 0.65
CUX1-211ENST00000546411 RIC3Q7Z5B4 369 aa19.13■□□□□ 0.65
CUX1-211ENST00000546411 G3BP1Q13283 466 aaKnown RBP eCLIP19.13■□□□□ 0.65
CUX1-211ENST00000546411 HSP90AB2PQ58FF8 381 aa19.13■□□□□ 0.65
CUX1-211ENST00000546411 AEBP1Q8IUX7 1158 aa19.12■□□□□ 0.65
CUX1-211ENST00000546411 RNF123Q5XPI4 1314 aa19.12■□□□□ 0.65
CUX1-211ENST00000546411 PHACTR3Q96KR7 559 aa19.12■□□□□ 0.65
CUX1-211ENST00000546411 ZNF530Q6P9A1 599 aaPredicted RBP19.11■□□□□ 0.65
CUX1-211ENST00000546411 AMOTL2Q9Y2J4 779 aa19.11■□□□□ 0.65
CUX1-211ENST00000546411 ANKRD36BQ8N2N9 1353 aa19.11■□□□□ 0.65
CUX1-211ENST00000546411 VPS37CA5D8V6 355 aaPredicted RBP19.11■□□□□ 0.65
CUX1-211ENST00000546411 KRT24Q2M2I5 525 aa19.11■□□□□ 0.65
CUX1-211ENST00000546411 TSPYL6Q8N831 410 aa19.11■□□□□ 0.65
CUX1-211ENST00000546411 RNF214Q8ND24 703 aa19.11■□□□□ 0.65
CUX1-211ENST00000546411 POLKQ9UBT6 870 aa19.11■□□□□ 0.65
CUX1-211ENST00000546411 ABCC2Q92887 1545 aa19.1■□□□□ 0.65
CUX1-211ENST00000546411 GNL2Q13823 731 aaKnown RBP19.1■□□□□ 0.65
CUX1-211ENST00000546411 IFT57Q9NWB7 429 aa19.1■□□□□ 0.65
CUX1-211ENST00000546411 MCM4P33991 863 aa19.1■□□□□ 0.65
CUX1-211ENST00000546411 CAVIN1Q6NZI2 390 aaKnown RBP19.1■□□□□ 0.65
CUX1-211ENST00000546411 DDX58O95786 925 aaKnown RBP19.09■□□□□ 0.65
CUX1-211ENST00000546411 NUCB2P80303 420 aa19.09■□□□□ 0.65
CUX1-211ENST00000546411 POLR3AO14802 1390 aaPredicted RBP19.09■□□□□ 0.65
CUX1-211ENST00000546411 ZKSCAN1P17029 563 aaPredicted RBP19.09■□□□□ 0.65
CUX1-211ENST00000546411 ALDH1L2Q3SY69 923 aa19.08■□□□□ 0.65
CUX1-211ENST00000546411 ZC3H6P61129 1189 aaKnown RBP19.08■□□□□ 0.65
CUX1-211ENST00000546411 SIL1Q9H173 461 aa19.08■□□□□ 0.65
CUX1-211ENST00000546411 CLASRPQ8N2M8 674 aaKnown RBP19.08■□□□□ 0.64
CUX1-211ENST00000546411 SYTL4Q96C24 671 aaPredicted RBP19.08■□□□□ 0.64
CUX1-211ENST00000546411 ABCC11Q96J66 1382 aa19.08■□□□□ 0.64
CUX1-211ENST00000546411 PRPF40AO75400 957 aaKnown RBP19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms