RNA–Protein interactions for RNA: ENST00000545026.1

LEMD3-206, Transcript of LEM domain containing 3, humanhuman

TSL 3

Gene LEMD3, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-206ENST00000545026 NR1H3Q13133 447 aa11.84□□□□□ -0.51
LEMD3-206ENST00000545026 TJAP1Q5JTD0 557 aa11.84□□□□□ -0.51
LEMD3-206ENST00000545026 NUDT12Q9BQG2 462 aa11.84□□□□□ -0.51
LEMD3-206ENST00000545026 ZC3H4Q9UPT8 1303 aaKnown RBP11.84□□□□□ -0.51
LEMD3-206ENST00000545026 PTPN5P54829 565 aa11.83□□□□□ -0.52
LEMD3-206ENST00000545026 KCNH2Q12809 1159 aa11.83□□□□□ -0.52
LEMD3-206ENST00000545026 ZBBXA8MT70 800 aa11.82□□□□□ -0.52
LEMD3-206ENST00000545026 ZNF516Q92618 1163 aa11.82□□□□□ -0.52
LEMD3-206ENST00000545026 PPP1R15AO75807 674 aaPredicted RBP11.81□□□□□ -0.52
LEMD3-206ENST00000545026 EIF4G2P78344 907 aaKnown RBP eCLIP11.81□□□□□ -0.52
LEMD3-206ENST00000545026 CFAP70Q5T0N1 1121 aa11.81□□□□□ -0.52
LEMD3-206ENST00000545026 UCN2Q96RP3 112 aa11.81□□□□□ -0.52
LEMD3-206ENST00000545026 PPP1R12CQ9BZL4 782 aa11.81□□□□□ -0.52
LEMD3-206ENST00000545026 IL21Q9HBE4 155 aa11.81□□□□□ -0.52
LEMD3-206ENST00000545026 SEMA3FQ13275 785 aa11.8□□□□□ -0.52
LEMD3-206ENST00000545026 MYT1LQ9UL68 1186 aa11.79□□□□□ -0.52
LEMD3-206ENST00000545026 PDIA4P13667 645 aaKnown RBP11.78□□□□□ -0.52
LEMD3-206ENST00000545026 ARMC2Q8NEN0 867 aa11.78□□□□□ -0.52
LEMD3-206ENST00000545026 PALM3A6NDB9 673 aaPredicted RBP11.77□□□□□ -0.53
LEMD3-206ENST00000545026 SLC6A16Q9GZN6 736 aa11.77□□□□□ -0.53
LEMD3-206ENST00000545026 SRPK2P78362 688 aaKnown RBP11.76□□□□□ -0.53
LEMD3-206ENST00000545026 PTCRAQ6ISU1 281 aaPredicted RBP11.76□□□□□ -0.53
LEMD3-206ENST00000545026 PDXDC2PQ6P474 469 aa11.76□□□□□ -0.53
LEMD3-206ENST00000545026 GPKOWQ92917 476 aaPredicted RBP eCLIP11.76□□□□□ -0.53
LEMD3-206ENST00000545026 TFIP11Q9UBB9 837 aaKnown RBP11.76□□□□□ -0.53
LEMD3-206ENST00000545026 GPSM3Q9Y4H4 160 aa11.76□□□□□ -0.53
LEMD3-206ENST00000545026 RFX1P22670 979 aa11.75□□□□□ -0.53
LEMD3-206ENST00000545026 PBXIP1Q96AQ6 731 aa11.75□□□□□ -0.53
LEMD3-206ENST00000545026 OCSTAMPQ9BR26 566 aa11.75□□□□□ -0.53
LEMD3-206ENST00000545026 RETREG2Q8NC44 543 aa11.74□□□□□ -0.53
LEMD3-206ENST00000545026 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.73□□□□□ -0.53
LEMD3-206ENST00000545026 PTK2Q05397 1052 aa11.73□□□□□ -0.53
LEMD3-206ENST00000545026 NBPF14Q5TI25 921 aa11.73□□□□□ -0.53
LEMD3-206ENST00000545026 TBC1D9Q6ZT07 1266 aa11.73□□□□□ -0.53
LEMD3-206ENST00000545026 CCDC24Q8N4L8 307 aa11.73□□□□□ -0.53
LEMD3-206ENST00000545026 NKX2-3Q8TAU0 364 aa11.73□□□□□ -0.53
LEMD3-206ENST00000545026 UNC93B1Q9H1C4 597 aa11.73□□□□□ -0.53
LEMD3-206ENST00000545026 TRIM26Q12899 539 aaPredicted RBP11.72□□□□□ -0.53
LEMD3-206ENST00000545026 TRAIPQ9BWF2 469 aa11.72□□□□□ -0.53
LEMD3-206ENST00000545026 MAFBQ9Y5Q3 323 aaPredicted RBP11.72□□□□□ -0.53
LEMD3-206ENST00000545026 ACIN1Q9UKV3 1341 aaKnown RBP11.71□□□□□ -0.53
LEMD3-206ENST00000545026 LMOD1P29536 600 aaPredicted RBP11.71□□□□□ -0.53
LEMD3-206ENST00000545026 S1PR4O95977 384 aa11.7□□□□□ -0.54
LEMD3-206ENST00000545026 ATP9BO43861 1147 aa11.69□□□□□ -0.54
LEMD3-206ENST00000545026 PIK3CDO00329 1044 aa11.68□□□□□ -0.54
LEMD3-206ENST00000545026 SH3BP5LQ7L8J4 393 aa11.68□□□□□ -0.54
LEMD3-206ENST00000545026 NFATC2IPQ8NCF5 419 aa11.67□□□□□ -0.54
LEMD3-206ENST00000545026 ADAM32Q8TC27 787 aa11.67□□□□□ -0.54
LEMD3-206ENST00000545026 CEP126Q9P2H0 1117 aa11.67□□□□□ -0.54
LEMD3-206ENST00000545026 FCF1Q9Y324 198 aaKnown RBP11.67□□□□□ -0.54
LEMD3-206ENST00000545026 ARHGAP9Q9BRR9 750 aa11.66□□□□□ -0.54
LEMD3-206ENST00000545026 PCDHB9Q9Y5E1 797 aa11.66□□□□□ -0.54
LEMD3-206ENST00000545026 MCCD1P59942 119 aaPredicted RBP11.65□□□□□ -0.54
LEMD3-206ENST00000545026 SH3RF1Q7Z6J0 888 aa11.64□□□□□ -0.55
LEMD3-206ENST00000545026 FAM174AQ8TBP5 190 aa11.64□□□□□ -0.55
LEMD3-206ENST00000545026 BAP1Q92560 729 aa11.64□□□□□ -0.55
LEMD3-206ENST00000545026 ZNF592Q92610 1267 aa11.64□□□□□ -0.55
LEMD3-206ENST00000545026 PCDH10Q9P2E7 1040 aa11.64□□□□□ -0.55
LEMD3-206ENST00000545026 CDCA8Q53HL2 280 aa11.63□□□□□ -0.55
LEMD3-206ENST00000545026 PHTF2Q8N3S3 785 aa11.63□□□□□ -0.55
LEMD3-206ENST00000545026 HCSTQ9UBK5 93 aa11.63□□□□□ -0.55
LEMD3-206ENST00000545026 ITGBL1O95965 494 aaPredicted RBP11.62□□□□□ -0.55
LEMD3-206ENST00000545026 SKIP12755 728 aa11.62□□□□□ -0.55
LEMD3-206ENST00000545026 ZBTB33Q86T24 672 aa11.62□□□□□ -0.55
LEMD3-206ENST00000545026 PODXL2Q9NZ53 605 aa11.62□□□□□ -0.55
LEMD3-206ENST00000545026 ATG7O95352 703 aa11.61□□□□□ -0.55
LEMD3-206ENST00000545026 KCNC4Q03721 635 aa11.61□□□□□ -0.55
LEMD3-206ENST00000545026 KANK4Q5T7N3 995 aaPredicted RBP11.61□□□□□ -0.55
LEMD3-206ENST00000545026 ZNF511Q8NB15 262 aa11.61□□□□□ -0.55
LEMD3-206ENST00000545026 USP17L3A6NCW0 530 aa11.6□□□□□ -0.55
LEMD3-206ENST00000545026 USP17L4A6NCW7 530 aa11.6□□□□□ -0.55
LEMD3-206ENST00000545026 LINC01559Q495D7 138 aa11.6□□□□□ -0.55
LEMD3-206ENST00000545026 SLFNL1Q499Z3 407 aa11.6□□□□□ -0.55
LEMD3-206ENST00000545026 USP17L2Q6R6M4 530 aa11.6□□□□□ -0.55
LEMD3-206ENST00000545026 USP17L1Q7RTZ2 530 aa11.6□□□□□ -0.55
LEMD3-206ENST00000545026 PLEKHM2Q8IWE5 1019 aa11.6□□□□□ -0.55
LEMD3-206ENST00000545026 FOXJ1Q92949 421 aa11.6□□□□□ -0.55
LEMD3-206ENST00000545026 MAGEB6P1A0A0J9YX57 407 aa11.59□□□□□ -0.55
LEMD3-206ENST00000545026 USP17L5A8MUK1 530 aa11.59□□□□□ -0.55
LEMD3-206ENST00000545026 PPEF1O14829 653 aaPredicted RBP11.59□□□□□ -0.55
LEMD3-206ENST00000545026 PDE4CQ08493 712 aa11.59□□□□□ -0.55
LEMD3-206ENST00000545026 C4orf48Q5BLP8 95 aa11.59□□□□□ -0.55
LEMD3-206ENST00000545026 BPHLQ86WA6 291 aaPredicted RBP11.59□□□□□ -0.55
LEMD3-206ENST00000545026 RNF166Q96A37 237 aaPredicted RBP11.59□□□□□ -0.55
LEMD3-206ENST00000545026 CARD14Q9BXL6 1004 aa11.59□□□□□ -0.55
LEMD3-206ENST00000545026 VRTNQ9H8Y1 702 aa11.59□□□□□ -0.55
LEMD3-206ENST00000545026 CHIC2Q9UKJ5 165 aa11.59□□□□□ -0.55
LEMD3-206ENST00000545026 CSB-PGBD3P0DP91 1061 aa11.58□□□□□ -0.56
LEMD3-206ENST00000545026 ERFEQ4G0M1 354 aa11.58□□□□□ -0.56
LEMD3-206ENST00000545026 RNF135Q8IUD6 432 aa11.58□□□□□ -0.56
LEMD3-206ENST00000545026 USTQ9Y2C2 406 aa11.58□□□□□ -0.56
LEMD3-206ENST00000545026 DZIP3Q86Y13 1208 aaKnown RBP11.57□□□□□ -0.56
LEMD3-206ENST00000545026 SPNS2Q8IVW8 549 aa11.57□□□□□ -0.56
LEMD3-206ENST00000545026 KCTD17Q8N5Z5 321 aa11.57□□□□□ -0.56
LEMD3-206ENST00000545026 RNF223E7ERA6 249 aa11.56□□□□□ -0.56
LEMD3-206ENST00000545026 SH3BP2P78314 561 aa11.56□□□□□ -0.56
LEMD3-206ENST00000545026 AGERQ15109 404 aa11.56□□□□□ -0.56
LEMD3-206ENST00000545026 DEPDC4Q8N2C3 294 aa11.56□□□□□ -0.56
LEMD3-206ENST00000545026 ZBTB7CA1YPR0 619 aa11.55□□□□□ -0.56
LEMD3-206ENST00000545026 PLPP7Q8NBV4 271 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms