RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TRIM29Q14134 588 aa9.45□□□□□ -0.9
VPS13D-211ENST00000543710 ERC1Q8IUD2 1116 aa9.44□□□□□ -0.9
VPS13D-211ENST00000543710 TRIM6-TRIM34B2RNG4 842 aa9.44□□□□□ -0.9
VPS13D-211ENST00000543710 ZKSCAN1P17029 563 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-211ENST00000543710 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-211ENST00000543710 NPHP3Q7Z494 1330 aa9.44□□□□□ -0.9
VPS13D-211ENST00000543710 GCC1Q96CN9 775 aa9.44□□□□□ -0.9
VPS13D-211ENST00000543710 DIAPH3Q9NSV4 1193 aa9.44□□□□□ -0.9
VPS13D-211ENST00000543710 TROQ12816 1431 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-211ENST00000543710 PCF11O94913 1555 aaKnown RBP9.44□□□□□ -0.9
VPS13D-211ENST00000543710 KCNA4P22459 653 aa9.44□□□□□ -0.9
VPS13D-211ENST00000543710 KCNH5Q8NCM2 988 aa9.44□□□□□ -0.9
VPS13D-211ENST00000543710 CWC15Q9P013 229 aaKnown RBP9.44□□□□□ -0.9
VPS13D-211ENST00000543710 CDC45O75419 566 aa9.43□□□□□ -0.9
VPS13D-211ENST00000543710 MRE11P49959 708 aa9.43□□□□□ -0.9
VPS13D-211ENST00000543710 PLEKHO1Q53GL0 409 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-211ENST00000543710 CEP89Q96ST8 783 aa9.43□□□□□ -0.9
VPS13D-211ENST00000543710 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS13D-211ENST00000543710 FAM184AQ8NB25 1140 aa9.43□□□□□ -0.9
VPS13D-211ENST00000543710 TRPC5Q9UL62 973 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-211ENST00000543710 MBD3O95983 291 aa9.43□□□□□ -0.9
VPS13D-211ENST00000543710 DPY19L2Q6NUT2 758 aa9.43□□□□□ -0.9
VPS13D-211ENST00000543710 TOPBP1Q92547 1522 aa9.43□□□□□ -0.9
VPS13D-211ENST00000543710 DIAPH1O60610 1272 aaKnown RBP9.43□□□□□ -0.9
VPS13D-211ENST00000543710 CALRP27797 417 aaKnown RBP9.43□□□□□ -0.9
VPS13D-211ENST00000543710 BIN2Q9UBW5 565 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-211ENST00000543710 DZIP1LQ8IYY4 767 aaKnown RBP9.42□□□□□ -0.9
VPS13D-211ENST00000543710 NESP48681 1621 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 C9orf84Q5VXU9 1444 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 NSD2O96028 1365 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 MARCH6O60337 910 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 AKAP17AQ02040 695 aaKnown RBP9.42□□□□□ -0.9
VPS13D-211ENST00000543710 HSP90AA2PQ14568 343 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-211ENST00000543710 PANK3Q9H999 370 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 CCDC173Q0VFZ6 552 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 CRBNQ96SW2 442 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 AEBP1Q8IUX7 1158 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 SMARCC1Q92922 1105 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-211ENST00000543710 SLC26A8Q96RN1 970 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 TPD52L1Q16890 204 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-211ENST00000543710 DDX54Q8TDD1 881 aaKnown RBP9.42□□□□□ -0.9
VPS13D-211ENST00000543710 PNISRQ8TF01 805 aaKnown RBP9.42□□□□□ -0.9
VPS13D-211ENST00000543710 ARID3AQ99856 593 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 CDCA7Q9BWT1 371 aaPredicted RBP9.42□□□□□ -0.9
VPS13D-211ENST00000543710 BCL2L13Q9BXK5 485 aa9.42□□□□□ -0.9
VPS13D-211ENST00000543710 PDE3AQ14432 1141 aa9.41□□□□□ -0.9
VPS13D-211ENST00000543710 A0A087WZG4 1122 aa9.41□□□□□ -0.9
VPS13D-211ENST00000543710 JDP2Q8WYK2 163 aa9.41□□□□□ -0.9
VPS13D-211ENST00000543710 TRAK1Q9UPV9 953 aa9.41□□□□□ -0.9
VPS13D-211ENST00000543710 SF3A1Q15459 793 aaKnown RBP9.41□□□□□ -0.9
VPS13D-211ENST00000543710 RAD21O60216 631 aa9.4□□□□□ -0.9
VPS13D-211ENST00000543710 SSFA2P28290 1259 aa9.4□□□□□ -0.9
VPS13D-211ENST00000543710 BRMS1Q9HCU9 246 aa9.4□□□□□ -0.9
VPS13D-211ENST00000543710 CIZ1Q9ULV3 898 aaPredicted RBP9.4□□□□□ -0.9
VPS13D-211ENST00000543710 ERBINQ96RT1 1412 aa9.4□□□□□ -0.9
VPS13D-211ENST00000543710 PARP3Q9Y6F1 533 aa9.4□□□□□ -0.9
VPS13D-211ENST00000543710 TAF3Q5VWG9 929 aa9.4□□□□□ -0.9
VPS13D-211ENST00000543710 WDR63Q8IWG1 891 aa9.4□□□□□ -0.9
VPS13D-211ENST00000543710 RDXP35241 583 aaKnown RBP9.4□□□□□ -0.91
VPS13D-211ENST00000543710 DACH1Q9UI36 760 aa9.4□□□□□ -0.91
VPS13D-211ENST00000543710 UNC13AQ9UPW8 1703 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 KIAA0586Q9BVV6 1533 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 KIF22Q14807 665 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 RBM27Q9P2N5 1060 aaKnown RBP9.39□□□□□ -0.91
VPS13D-211ENST00000543710 R3HCC1Q9Y3T6 440 aaKnown RBP9.39□□□□□ -0.91
VPS13D-211ENST00000543710 FLAD1Q8NFF5 587 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 TFCP2L1Q9NZI6 479 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 TNRQ92752 1358 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 ANKRD1Q15327 319 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 SRCIN1Q9C0H9 1055 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 USP21Q9UK80 565 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 ABCC11Q96J66 1382 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 IPO7O95373 1038 aaKnown RBP9.39□□□□□ -0.91
VPS13D-211ENST00000543710 RABEP1Q15276 862 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 NUP160Q12769 1436 aa9.39□□□□□ -0.91
VPS13D-211ENST00000543710 RAD54L2Q9Y4B4 1467 aa9.38□□□□□ -0.91
VPS13D-211ENST00000543710 RUSC2Q8N2Y8 1516 aa9.38□□□□□ -0.91
VPS13D-211ENST00000543710 BECN2A8MW95 431 aa9.38□□□□□ -0.91
VPS13D-211ENST00000543710 XBP1P17861 261 aa9.38□□□□□ -0.91
VPS13D-211ENST00000543710 FAM43AQ8N2R8 423 aa9.38□□□□□ -0.91
VPS13D-211ENST00000543710 DDX49Q9Y6V7 483 aaKnown RBP9.38□□□□□ -0.91
VPS13D-211ENST00000543710 RBM5P52756 815 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS13D-211ENST00000543710 CABP4P57796 275 aa9.38□□□□□ -0.91
VPS13D-211ENST00000543710 HMGN5P82970 282 aaKnown RBP9.38□□□□□ -0.91
VPS13D-211ENST00000543710 AFAP1Q8N556 730 aa9.38□□□□□ -0.91
VPS13D-211ENST00000543710 CCDC43Q96MW1 224 aaKnown RBP9.38□□□□□ -0.91
VPS13D-211ENST00000543710 MYO1BO43795 1136 aa9.38□□□□□ -0.91
VPS13D-211ENST00000543710 CNTROBQ8N137 903 aa9.38□□□□□ -0.91
VPS13D-211ENST00000543710 ZNF692Q9BU19 519 aaPredicted RBP9.38□□□□□ -0.91
VPS13D-211ENST00000543710 SASS6Q6UVJ0 657 aa9.37□□□□□ -0.91
VPS13D-211ENST00000543710 ZNF396Q96N95 335 aaPredicted RBP9.37□□□□□ -0.91
VPS13D-211ENST00000543710 CEBPAP49715 358 aaPredicted RBP9.37□□□□□ -0.91
VPS13D-211ENST00000543710 ST5P78524 1137 aa9.37□□□□□ -0.91
VPS13D-211ENST00000543710 GNL3LQ9NVN8 582 aaKnown RBP9.37□□□□□ -0.91
VPS13D-211ENST00000543710 ATAD2Q6PL18 1390 aa9.37□□□□□ -0.91
VPS13D-211ENST00000543710 ERICH2A1L162 156 aa9.37□□□□□ -0.91
VPS13D-211ENST00000543710 OLFM4Q6UX06 510 aa9.37□□□□□ -0.91
VPS13D-211ENST00000543710 RTN4Q9NQC3 1192 aaKnown RBP9.37□□□□□ -0.91
VPS13D-211ENST00000543710 CCDC66A2RUB6 948 aa9.37□□□□□ -0.91
VPS13D-211ENST00000543710 PRKCSHP14314 528 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms