RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-219	ENST00000541341	UNC5CL	Q8IV45	518 aa		13.98	□□□□□ -0.17
CHFR-219	ENST00000541341	PRAM1	Q96QH2	718 aa		13.98	□□□□□ -0.17
CHFR-219	ENST00000541341	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.98	□□□□□ -0.17
CHFR-219	ENST00000541341	ZRANB1	Q9UGI0	708 aa		13.98	□□□□□ -0.17
CHFR-219	ENST00000541341	SLIT2	O94813	1529 aa		13.98	□□□□□ -0.17
CHFR-219	ENST00000541341	TNS3	Q68CZ2	1445 aa		13.98	□□□□□ -0.17
CHFR-219	ENST00000541341	DEFB132	Q7Z7B7	95 aa		13.97	□□□□□ -0.17
CHFR-219	ENST00000541341		A0A0G2JS52	829 aa		13.96	□□□□□ -0.17
CHFR-219	ENST00000541341	L3MBTL2	Q969R5	705 aa		13.96	□□□□□ -0.17
CHFR-219	ENST00000541341	C14orf93	Q9H972	538 aa	Known RBP	13.96	□□□□□ -0.17
CHFR-219	ENST00000541341	ALS2	Q96Q42	1657 aa		13.95	□□□□□ -0.18
CHFR-219	ENST00000541341	PSME1	Q06323	249 aa		13.95	□□□□□ -0.18
CHFR-219	ENST00000541341	POGK	Q9P215	609 aa		13.95	□□□□□ -0.18
CHFR-219	ENST00000541341	KDM2A	Q9Y2K7	1162 aa		13.95	□□□□□ -0.18
CHFR-219	ENST00000541341	SEPT12	Q8IYM1	358 aa		13.94	□□□□□ -0.18
CHFR-219	ENST00000541341	TRAK1	Q9UPV9	953 aa		13.94	□□□□□ -0.18
CHFR-219	ENST00000541341	CRYBG1	Q9Y4K1	1723 aa		13.94	□□□□□ -0.18
CHFR-219	ENST00000541341	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.93	□□□□□ -0.18
CHFR-219	ENST00000541341	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.93	□□□□□ -0.18
CHFR-219	ENST00000541341	KTN1	Q86UP2	1357 aa	Known RBP	13.93	□□□□□ -0.18
CHFR-219	ENST00000541341	DCAF11	Q8TEB1	546 aa		13.92	□□□□□ -0.18
CHFR-219	ENST00000541341	ITSN1	Q15811	1721 aa		13.92	□□□□□ -0.18
CHFR-219	ENST00000541341	ADGRB2	O60241	1585 aa		13.92	□□□□□ -0.18
CHFR-219	ENST00000541341	COL14A1	Q05707	1796 aa	Known RBP	13.91	□□□□□ -0.18
CHFR-219	ENST00000541341	FAM83G	A6ND36	823 aa		13.91	□□□□□ -0.18
CHFR-219	ENST00000541341	FAM182B	Q5T319	152 aa		13.91	□□□□□ -0.18
CHFR-219	ENST00000541341	ADGRB1	O14514	1584 aa		13.91	□□□□□ -0.18
CHFR-219	ENST00000541341	BLM	P54132	1417 aa	Predicted RBP	13.9	□□□□□ -0.18
CHFR-219	ENST00000541341	ANP32A	P39687	249 aa	Known RBP	13.9	□□□□□ -0.18
CHFR-219	ENST00000541341	ROCK2	O75116	1388 aa	Known RBP	13.9	□□□□□ -0.18
CHFR-219	ENST00000541341	DLC1	Q96QB1	1528 aa		13.9	□□□□□ -0.19
CHFR-219	ENST00000541341	SBNO1	A3KN83	1393 aa		13.89	□□□□□ -0.19
CHFR-219	ENST00000541341	PAK3	O75914	559 aa	Predicted RBP	13.89	□□□□□ -0.19
CHFR-219	ENST00000541341	SF3B2	Q13435	895 aa	Known RBP	13.89	□□□□□ -0.19
CHFR-219	ENST00000541341	VPS72	Q15906	364 aa		13.89	□□□□□ -0.19
CHFR-219	ENST00000541341	FAM98C	Q17RN3	349 aa	Known RBP	13.89	□□□□□ -0.19
CHFR-219	ENST00000541341	CCDC125	Q86Z20	511 aa		13.89	□□□□□ -0.19
CHFR-219	ENST00000541341	RGPD1	P0DJD0	1748 aa		13.89	□□□□□ -0.19
CHFR-219	ENST00000541341	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.89	□□□□□ -0.19
CHFR-219	ENST00000541341	PRR36	Q9H6K5	1346 aa		13.89	□□□□□ -0.19
CHFR-219	ENST00000541341	PSD	A5PKW4	1024 aa	Predicted RBP	13.88	□□□□□ -0.19
CHFR-219	ENST00000541341	KRT27	Q7Z3Y8	459 aa		13.88	□□□□□ -0.19
CHFR-219	ENST00000541341	SIRT1	Q96EB6	747 aa		13.88	□□□□□ -0.19
CHFR-219	ENST00000541341	BTG4	Q9NY30	223 aa		13.88	□□□□□ -0.19
CHFR-219	ENST00000541341	SMG6	Q86US8	1419 aa	Known RBP	13.88	□□□□□ -0.19
CHFR-219	ENST00000541341	TNS1	Q9HBL0	1735 aa	Known RBP	13.87	□□□□□ -0.19
CHFR-219	ENST00000541341	ARHGEF10	O15013	1369 aa		13.87	□□□□□ -0.19
CHFR-219	ENST00000541341	GPRASP1	Q5JY77	1395 aa		13.86	□□□□□ -0.19
CHFR-219	ENST00000541341	CCDC7	Q96M83	1385 aa		13.86	□□□□□ -0.19
CHFR-219	ENST00000541341	TULP4	Q9NRJ4	1543 aa		13.86	□□□□□ -0.19
CHFR-219	ENST00000541341	HSPA5	P11021	654 aa	Known RBP	13.86	□□□□□ -0.19
CHFR-219	ENST00000541341	RTL5	Q5HYW3	569 aa	Predicted RBP	13.86	□□□□□ -0.19
CHFR-219	ENST00000541341	NUTM2G	Q5VZR2	741 aa		13.86	□□□□□ -0.19
CHFR-219	ENST00000541341	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.86	□□□□□ -0.19
CHFR-219	ENST00000541341	NOP58	Q9Y2X3	529 aa	Known RBP	13.86	□□□□□ -0.19
CHFR-219	ENST00000541341	ANKAR	Q7Z5J8	1434 aa		13.85	□□□□□ -0.19
CHFR-219	ENST00000541341	NBPF8	Q3BBV2	869 aa		13.85	□□□□□ -0.19
CHFR-219	ENST00000541341	NGDN	Q8NEJ9	315 aa	Known RBP	13.85	□□□□□ -0.19
CHFR-219	ENST00000541341	WASHC2A	Q641Q2	1341 aa		13.85	□□□□□ -0.19
CHFR-219	ENST00000541341	USP35	Q9P2H5	1018 aa		13.84	□□□□□ -0.19
CHFR-219	ENST00000541341	MRS2	Q9HD23	443 aa		13.83	□□□□□ -0.2
CHFR-219	ENST00000541341	TOPAZ1	Q8N9V7	1692 aa		13.82	□□□□□ -0.2
CHFR-219	ENST00000541341	THSD7A	Q9UPZ6	1657 aa		13.82	□□□□□ -0.2
CHFR-219	ENST00000541341	WASL	O00401	505 aa	Predicted RBP	13.82	□□□□□ -0.2
CHFR-219	ENST00000541341	MSH5	O43196	834 aa		13.82	□□□□□ -0.2
CHFR-219	ENST00000541341	EN1	Q05925	392 aa	Predicted RBP	13.82	□□□□□ -0.2
CHFR-219	ENST00000541341	CHRNA2	Q15822	529 aa		13.82	□□□□□ -0.2
CHFR-219	ENST00000541341	LRP5	O75197	1615 aa		13.82	□□□□□ -0.2
CHFR-219	ENST00000541341	STRN4	Q9NRL3	753 aa		13.81	□□□□□ -0.2
CHFR-219	ENST00000541341	ONECUT3	O60422	494 aa	Predicted RBP	13.8	□□□□□ -0.2
CHFR-219	ENST00000541341	PRDM11	Q9NQV5	511 aa		13.8	□□□□□ -0.2
CHFR-219	ENST00000541341	RNF123	Q5XPI4	1314 aa		13.8	□□□□□ -0.2
CHFR-219	ENST00000541341	ATP7B	P35670	1465 aa		13.8	□□□□□ -0.2
CHFR-219	ENST00000541341	BAG6	P46379	1132 aa		13.79	□□□□□ -0.2
CHFR-219	ENST00000541341	ZC3H6	P61129	1189 aa	Known RBP	13.79	□□□□□ -0.2
CHFR-219	ENST00000541341	NUDC	Q9Y266	331 aa		13.79	□□□□□ -0.2
CHFR-219	ENST00000541341	KIAA0232	Q92628	1395 aa		13.79	□□□□□ -0.2
CHFR-219	ENST00000541341	NUDT16	Q96DE0	195 aa	Known RBP	13.78	□□□□□ -0.2
CHFR-219	ENST00000541341	IPO9	Q96P70	1041 aa	Known RBP	13.78	□□□□□ -0.2
CHFR-219	ENST00000541341	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.78	□□□□□ -0.2
CHFR-219	ENST00000541341	SPATA31A5	Q5VU36	1347 aa		13.78	□□□□□ -0.2
CHFR-219	ENST00000541341	SPATA31A7	Q8IWB4	1347 aa		13.78	□□□□□ -0.2
CHFR-219	ENST00000541341	QRICH2	Q9H0J4	1663 aa		13.78	□□□□□ -0.2
CHFR-219	ENST00000541341	RGPD5	Q99666	1765 aa		13.78	□□□□□ -0.2
CHFR-219	ENST00000541341	INSR	P06213	1382 aa		13.77	□□□□□ -0.21
CHFR-219	ENST00000541341	EIF3A	Q14152	1382 aa	Known RBP	13.77	□□□□□ -0.21
CHFR-219	ENST00000541341	NBPF1	Q3BBV0	1214 aa		13.77	□□□□□ -0.21
CHFR-219	ENST00000541341	NRK	Q7Z2Y5	1582 aa		13.76	□□□□□ -0.21
CHFR-219	ENST00000541341	ZBTB7C	A1YPR0	619 aa		13.76	□□□□□ -0.21
CHFR-219	ENST00000541341	DEK	P35659	375 aa	Known RBP	13.76	□□□□□ -0.21
CHFR-219	ENST00000541341	PDE3B	Q13370	1112 aa		13.76	□□□□□ -0.21
CHFR-219	ENST00000541341	R3HDM1	Q15032	1099 aa	Known RBP	13.76	□□□□□ -0.21
CHFR-219	ENST00000541341	CCDC136	Q96JN2	1154 aa		13.76	□□□□□ -0.21
CHFR-219	ENST00000541341	CDK19	Q9BWU1	502 aa		13.76	□□□□□ -0.21
CHFR-219	ENST00000541341	TRIM37	O94972	964 aa		13.75	□□□□□ -0.21
CHFR-219	ENST00000541341	MS4A1	P11836	297 aa		13.75	□□□□□ -0.21
CHFR-219	ENST00000541341	EZH2	Q15910	746 aa	Known RBP	13.75	□□□□□ -0.21
CHFR-219	ENST00000541341	NUP188	Q5SRE5	1749 aa		13.75	□□□□□ -0.21
CHFR-219	ENST00000541341	ACE	P12821	1306 aa		13.74	□□□□□ -0.21
CHFR-219	ENST00000541341	TCERG1	O14776	1098 aa	Known RBP	13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms