RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 ORAI2Q96SN7 254 aa12.9□□□□□ -0.34
DDX55-208ENST00000541259 CD163L1Q9NR16 1453 aa12.9□□□□□ -0.34
DDX55-208ENST00000541259 PLEKHG3A1L390 1219 aa12.89□□□□□ -0.35
DDX55-208ENST00000541259 ESCO1Q5FWF5 840 aa12.89□□□□□ -0.35
DDX55-208ENST00000541259 CARD14Q9BXL6 1004 aa12.88□□□□□ -0.35
DDX55-208ENST00000541259 SLAIN2Q9P270 581 aa12.88□□□□□ -0.35
DDX55-208ENST00000541259 MON2Q7Z3U7 1717 aa12.88□□□□□ -0.35
DDX55-208ENST00000541259 ACEP12821 1306 aa12.88□□□□□ -0.35
DDX55-208ENST00000541259 A0A1W2PP64 1363 aa12.87□□□□□ -0.35
DDX55-208ENST00000541259 NINLQ9Y2I6 1382 aa12.87□□□□□ -0.35
DDX55-208ENST00000541259 CERKQ8TCT0 537 aa12.87□□□□□ -0.35
DDX55-208ENST00000541259 PHF8Q9UPP1 1060 aa12.87□□□□□ -0.35
DDX55-208ENST00000541259 PER1O15534 1290 aaPredicted RBP12.86□□□□□ -0.35
DDX55-208ENST00000541259 CPSF1Q10570 1443 aaKnown RBP12.86□□□□□ -0.35
DDX55-208ENST00000541259 KIF1AQ12756 1690 aa12.86□□□□□ -0.35
DDX55-208ENST00000541259 ANKRD36BQ8N2N9 1353 aa12.85□□□□□ -0.35
DDX55-208ENST00000541259 NGDNQ8NEJ9 315 aaKnown RBP12.85□□□□□ -0.35
DDX55-208ENST00000541259 TERF2IPQ9NYB0 399 aa12.85□□□□□ -0.35
DDX55-208ENST00000541259 POLR3AO14802 1390 aaPredicted RBP12.84□□□□□ -0.35
DDX55-208ENST00000541259 BRINP3Q76B58 766 aa12.84□□□□□ -0.35
DDX55-208ENST00000541259 HDGFL2Q7Z4V5 671 aaPredicted RBP12.84□□□□□ -0.35
DDX55-208ENST00000541259 DDX17Q92841 729 aaKnown RBP12.84□□□□□ -0.35
DDX55-208ENST00000541259 IQSEC2Q5JU85 1478 aa12.84□□□□□ -0.35
DDX55-208ENST00000541259 ROBO1Q9Y6N7 1651 aa12.83□□□□□ -0.35
DDX55-208ENST00000541259 KTN1Q86UP2 1357 aaKnown RBP12.83□□□□□ -0.36
DDX55-208ENST00000541259 NRKQ7Z2Y5 1582 aa12.83□□□□□ -0.36
DDX55-208ENST00000541259 NSD3Q9BZ95 1437 aa12.83□□□□□ -0.36
DDX55-208ENST00000541259 FOXO3O43524 673 aa12.83□□□□□ -0.36
DDX55-208ENST00000541259 DIEXFQ68CQ4 756 aaKnown RBP12.83□□□□□ -0.36
DDX55-208ENST00000541259 KIF20BQ96Q89 1820 aa12.83□□□□□ -0.36
DDX55-208ENST00000541259 XPCQ01831 940 aaPredicted RBP12.82□□□□□ -0.36
DDX55-208ENST00000541259 CNGB1Q14028 1251 aaPredicted RBP12.82□□□□□ -0.36
DDX55-208ENST00000541259 USP6P35125 1406 aa12.81□□□□□ -0.36
DDX55-208ENST00000541259 UBAP1LF5GYI3 381 aa12.81□□□□□ -0.36
DDX55-208ENST00000541259 PSME1Q06323 249 aa12.81□□□□□ -0.36
DDX55-208ENST00000541259 KNSTRNQ9Y448 316 aa12.81□□□□□ -0.36
DDX55-208ENST00000541259 TRPM3Q9HCF6 1732 aaPredicted RBP12.81□□□□□ -0.36
DDX55-208ENST00000541259 NHSL1Q5SYE7 1610 aa12.8□□□□□ -0.36
DDX55-208ENST00000541259 SSH2Q76I76 1423 aa12.8□□□□□ -0.36
DDX55-208ENST00000541259 TOM1O60784 492 aa12.8□□□□□ -0.36
DDX55-208ENST00000541259 PIP4K2BP78356 416 aa12.8□□□□□ -0.36
DDX55-208ENST00000541259 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.8□□□□□ -0.36
DDX55-208ENST00000541259 EDC4Q6P2E9 1401 aaKnown RBP12.79□□□□□ -0.36
DDX55-208ENST00000541259 AMER1Q5JTC6 1135 aaPredicted RBP12.79□□□□□ -0.36
DDX55-208ENST00000541259 CC2D1BQ5T0F9 858 aaKnown RBP12.79□□□□□ -0.36
DDX55-208ENST00000541259 KRT28Q7Z3Y7 464 aa12.79□□□□□ -0.36
DDX55-208ENST00000541259 ZRANB1Q9UGI0 708 aa12.79□□□□□ -0.36
DDX55-208ENST00000541259 TTC21BQ7Z4L5 1316 aa12.79□□□□□ -0.36
DDX55-208ENST00000541259 ANKRD26Q9UPS8 1709 aa12.79□□□□□ -0.36
DDX55-208ENST00000541259 PIK3C2AO00443 1686 aa12.78□□□□□ -0.36
DDX55-208ENST00000541259 NME9Q86XW9 330 aa12.78□□□□□ -0.36
DDX55-208ENST00000541259 PXDNQ92626 1479 aa12.78□□□□□ -0.36
DDX55-208ENST00000541259 MARF1Q9Y4F3 1742 aaKnown RBP12.77□□□□□ -0.36
DDX55-208ENST00000541259 FYB1O15117 783 aa12.77□□□□□ -0.37
DDX55-208ENST00000541259 PAK3O75914 559 aaPredicted RBP12.77□□□□□ -0.37
DDX55-208ENST00000541259 GGNBP2Q9H3C7 697 aa12.77□□□□□ -0.37
DDX55-208ENST00000541259 ALS2Q96Q42 1657 aa12.77□□□□□ -0.37
DDX55-208ENST00000541259 AKT1S1Q96B36 256 aa12.76□□□□□ -0.37
DDX55-208ENST00000541259 CGNL1Q0VF96 1302 aa12.76□□□□□ -0.37
DDX55-208ENST00000541259 NPHP3Q7Z494 1330 aa12.76□□□□□ -0.37
DDX55-208ENST00000541259 PHLPP1O60346 1717 aa12.76□□□□□ -0.37
DDX55-208ENST00000541259 NUTM2GQ5VZR2 741 aa12.75□□□□□ -0.37
DDX55-208ENST00000541259 MAP2P11137 1827 aaKnown RBP12.74□□□□□ -0.37
DDX55-208ENST00000541259 AHDC1Q5TGY3 1603 aaPredicted RBP12.74□□□□□ -0.37
DDX55-208ENST00000541259 SOS2Q07890 1332 aaPredicted RBP12.74□□□□□ -0.37
DDX55-208ENST00000541259 TTC21AQ8NDW8 1320 aa12.74□□□□□ -0.37
DDX55-208ENST00000541259 BRD4O60885 1362 aaPredicted RBP12.73□□□□□ -0.37
DDX55-208ENST00000541259 NPC1L1Q9UHC9 1359 aa12.73□□□□□ -0.37
DDX55-208ENST00000541259 ABTB2Q8N961 1025 aa12.73□□□□□ -0.37
DDX55-208ENST00000541259 PRKRIP1Q9H875 184 aaPredicted RBP12.73□□□□□ -0.37
DDX55-208ENST00000541259 USP54Q70EL1 1684 aa12.73□□□□□ -0.37
DDX55-208ENST00000541259 SBNO1A3KN83 1393 aa12.72□□□□□ -0.37
DDX55-208ENST00000541259 SPATA31A3Q5VYP0 1347 aa12.72□□□□□ -0.37
DDX55-208ENST00000541259 ANP32CO43423 234 aa12.72□□□□□ -0.37
DDX55-208ENST00000541259 LMOD2Q6P5Q4 547 aa12.72□□□□□ -0.37
DDX55-208ENST00000541259 MIER1Q8N108 512 aa12.72□□□□□ -0.37
DDX55-208ENST00000541259 COL16A1Q07092 1604 aaPredicted RBP12.71□□□□□ -0.37
DDX55-208ENST00000541259 PLEKHG5O94827 1062 aa12.71□□□□□ -0.37
DDX55-208ENST00000541259 FBLN1P23142 703 aa12.71□□□□□ -0.37
DDX55-208ENST00000541259 TNNT2P45379 298 aaPredicted RBP12.71□□□□□ -0.37
DDX55-208ENST00000541259 VASPP50552 380 aaPredicted RBP12.71□□□□□ -0.37
DDX55-208ENST00000541259 NLRP6P59044 892 aa12.71□□□□□ -0.37
DDX55-208ENST00000541259 MORC1Q86VD1 984 aa12.71□□□□□ -0.37
DDX55-208ENST00000541259 OVOS2A0A0J9YW53 1432 aa12.71□□□□□ -0.38
DDX55-208ENST00000541259 TNS3Q68CZ2 1445 aa12.71□□□□□ -0.38
DDX55-208ENST00000541259 OVOS2Q6IE36 1432 aa12.71□□□□□ -0.38
DDX55-208ENST00000541259 NSD2O96028 1365 aa12.7□□□□□ -0.38
DDX55-208ENST00000541259 USP31Q70CQ4 1352 aa12.7□□□□□ -0.38
DDX55-208ENST00000541259 PARD3Q8TEW0 1356 aa12.7□□□□□ -0.38
DDX55-208ENST00000541259 COG3Q96JB2 828 aa12.7□□□□□ -0.38
DDX55-208ENST00000541259 CRYBG1Q9Y4K1 1723 aa12.7□□□□□ -0.38
DDX55-208ENST00000541259 RALBP1Q15311 655 aa12.69□□□□□ -0.38
DDX55-208ENST00000541259 MED1Q15648 1581 aaPredicted RBP12.69□□□□□ -0.38
DDX55-208ENST00000541259 NLRP13Q86W25 1043 aa12.68□□□□□ -0.38
DDX55-208ENST00000541259 PHRF1Q9P1Y6 1649 aaKnown RBP12.68□□□□□ -0.38
DDX55-208ENST00000541259 ABCA3Q99758 1704 aa12.68□□□□□ -0.38
DDX55-208ENST00000541259 LTN1O94822 1766 aa12.67□□□□□ -0.38
DDX55-208ENST00000541259 SOX12O15370 315 aa12.67□□□□□ -0.38
DDX55-208ENST00000541259 PPP2R1AP30153 589 aa12.67□□□□□ -0.38
DDX55-208ENST00000541259 CABLES1Q8TDN4 633 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms