RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 CCDC7Q96M83 1385 aa9.42□□□□□ -0.9
MSH6-209ENST00000538136 CCDC85AQ96PX6 553 aaPredicted RBP9.42□□□□□ -0.9
MSH6-209ENST00000538136 MYL6BP14649 208 aa9.41□□□□□ -0.9
MSH6-209ENST00000538136 CABP4P57796 275 aa9.41□□□□□ -0.9
MSH6-209ENST00000538136 KDM5DQ9BY66 1539 aa9.41□□□□□ -0.9
MSH6-209ENST00000538136 RPRD2Q5VT52 1461 aaKnown RBP9.41□□□□□ -0.9
MSH6-209ENST00000538136 SHANK2Q9UPX8 1470 aa9.41□□□□□ -0.9
MSH6-209ENST00000538136 RXRBP28702 533 aa9.41□□□□□ -0.9
MSH6-209ENST00000538136 ANXA1P04083 346 aa9.41□□□□□ -0.9
MSH6-209ENST00000538136 KCNH5Q8NCM2 988 aa9.41□□□□□ -0.9
MSH6-209ENST00000538136 TESK2Q96S53 571 aa9.41□□□□□ -0.9
MSH6-209ENST00000538136 ABCA6Q8N139 1617 aa9.41□□□□□ -0.9
MSH6-209ENST00000538136 CAMSAP1Q5T5Y3 1602 aa9.4□□□□□ -0.9
MSH6-209ENST00000538136 A2ML1A8K2U0 1454 aa9.4□□□□□ -0.9
MSH6-209ENST00000538136 PPP2R1AP30153 589 aa9.4□□□□□ -0.9
MSH6-209ENST00000538136 ATAD2Q6PL18 1390 aa9.4□□□□□ -0.9
MSH6-209ENST00000538136 PSDA5PKW4 1024 aaPredicted RBP9.4□□□□□ -0.9
MSH6-209ENST00000538136 SMIM5Q71RC9 77 aa9.4□□□□□ -0.9
MSH6-209ENST00000538136 MAP3K19Q56UN5 1328 aa9.4□□□□□ -0.91
MSH6-209ENST00000538136 CCDC24Q8N4L8 307 aa9.4□□□□□ -0.91
MSH6-209ENST00000538136 TAOK2Q9UL54 1235 aa9.4□□□□□ -0.91
MSH6-209ENST00000538136 SETD1BQ9UPS6 1966 aaKnown RBP9.39□□□□□ -0.91
MSH6-209ENST00000538136 LRPPRCP42704 1394 aaKnown RBP9.39□□□□□ -0.91
MSH6-209ENST00000538136 KIAA0232Q92628 1395 aa9.39□□□□□ -0.91
MSH6-209ENST00000538136 APBA3O96018 575 aa9.39□□□□□ -0.91
MSH6-209ENST00000538136 TSR2Q969E8 191 aaKnown RBP9.39□□□□□ -0.91
MSH6-209ENST00000538136 TSPYL4Q9UJ04 414 aa9.39□□□□□ -0.91
MSH6-209ENST00000538136 CLTCQ00610 1675 aaKnown RBP9.39□□□□□ -0.91
MSH6-209ENST00000538136 PLEKHG1Q9ULL1 1385 aa9.38□□□□□ -0.91
MSH6-209ENST00000538136 ADGRL2O95490 1459 aa9.38□□□□□ -0.91
MSH6-209ENST00000538136 KIDINS220Q9ULH0 1771 aa9.38□□□□□ -0.91
MSH6-209ENST00000538136 CFAP74Q9C0B2 1584 aa9.37□□□□□ -0.91
MSH6-209ENST00000538136 TCP11L2Q8N4U5 519 aa9.37□□□□□ -0.91
MSH6-209ENST00000538136 PRIM1P49642 420 aaKnown RBP9.37□□□□□ -0.91
MSH6-209ENST00000538136 PLEKHO1Q53GL0 409 aaPredicted RBP9.37□□□□□ -0.91
MSH6-209ENST00000538136 DEFB132Q7Z7B7 95 aa9.37□□□□□ -0.91
MSH6-209ENST00000538136 PRAG1Q86YV5 1406 aa9.37□□□□□ -0.91
MSH6-209ENST00000538136 SEPT12Q8IYM1 358 aa9.36□□□□□ -0.91
MSH6-209ENST00000538136 FBXO41Q8TF61 875 aa9.36□□□□□ -0.91
MSH6-209ENST00000538136 AXIN2Q9Y2T1 843 aa9.36□□□□□ -0.91
MSH6-209ENST00000538136 GLI2P10070 1586 aa9.36□□□□□ -0.91
MSH6-209ENST00000538136 MSL1Q68DK7 614 aa9.36□□□□□ -0.91
MSH6-209ENST00000538136 FTSJ3Q8IY81 847 aaKnown RBP9.36□□□□□ -0.91
MSH6-209ENST00000538136 JARID2Q92833 1246 aaPredicted RBP9.36□□□□□ -0.91
MSH6-209ENST00000538136 PLIN1O60240 522 aa9.36□□□□□ -0.91
MSH6-209ENST00000538136 RALBP1Q15311 655 aa9.36□□□□□ -0.91
MSH6-209ENST00000538136 NBPF6Q5VWK0 638 aa9.36□□□□□ -0.91
MSH6-209ENST00000538136 NBPF4Q96M43 638 aa9.36□□□□□ -0.91
MSH6-209ENST00000538136 MAST1Q9Y2H9 1570 aa9.35□□□□□ -0.91
MSH6-209ENST00000538136 A0A1W2PP64 1363 aa9.35□□□□□ -0.91
MSH6-209ENST00000538136 NLRP1Q9C000 1473 aa9.35□□□□□ -0.91
MSH6-209ENST00000538136 CDCA7LQ96GN5 454 aa9.35□□□□□ -0.91
MSH6-209ENST00000538136 TMOD3Q9NYL9 352 aa9.35□□□□□ -0.91
MSH6-209ENST00000538136 POLKQ9UBT6 870 aa9.35□□□□□ -0.91
MSH6-209ENST00000538136 SUPT16HQ9Y5B9 1047 aaKnown RBP9.35□□□□□ -0.91
MSH6-209ENST00000538136 ARHGEF5Q12774 1597 aa9.35□□□□□ -0.91
MSH6-209ENST00000538136 ARHGEF40Q8TER5 1519 aa9.35□□□□□ -0.91
MSH6-209ENST00000538136 EYA1Q99502 592 aa9.35□□□□□ -0.91
MSH6-209ENST00000538136 KIF13AQ9H1H9 1805 aa9.34□□□□□ -0.91
MSH6-209ENST00000538136 FKBP8Q14318 412 aa9.34□□□□□ -0.91
MSH6-209ENST00000538136 NFATC2IPQ8NCF5 419 aa9.34□□□□□ -0.91
MSH6-209ENST00000538136 ZCRB1Q8TBF4 217 aaKnown RBP9.34□□□□□ -0.91
MSH6-209ENST00000538136 TFCP2L1Q9NZI6 479 aa9.34□□□□□ -0.91
MSH6-209ENST00000538136 ADGRL3Q9HAR2 1447 aa9.34□□□□□ -0.91
MSH6-209ENST00000538136 SPG7Q9UQ90 795 aa9.34□□□□□ -0.91
MSH6-209ENST00000538136 ABCC11Q96J66 1382 aa9.34□□□□□ -0.91
MSH6-209ENST00000538136 EIF4A2Q14240 407 aaKnown RBP9.33□□□□□ -0.92
MSH6-209ENST00000538136 TRPC5Q9UL62 973 aaPredicted RBP9.33□□□□□ -0.92
MSH6-209ENST00000538136 STK31Q9BXU1 1019 aa9.33□□□□□ -0.92
MSH6-209ENST00000538136 MAP3K4Q9Y6R4 1608 aa9.33□□□□□ -0.92
MSH6-209ENST00000538136 IL2RBP14784 551 aa9.33□□□□□ -0.92
MSH6-209ENST00000538136 GPTP24298 496 aa9.33□□□□□ -0.92
MSH6-209ENST00000538136 OS9Q13438 667 aaPredicted RBP9.33□□□□□ -0.92
MSH6-209ENST00000538136 MYBBP1AQ9BQG0 1328 aaKnown RBP9.32□□□□□ -0.92
MSH6-209ENST00000538136 KRT24Q2M2I5 525 aa9.32□□□□□ -0.92
MSH6-209ENST00000538136 SMC4Q9NTJ3 1288 aa9.32□□□□□ -0.92
MSH6-209ENST00000538136 KCNQ2O43526 872 aa9.32□□□□□ -0.92
MSH6-209ENST00000538136 HOXC9P31274 260 aa9.32□□□□□ -0.92
MSH6-209ENST00000538136 EN1Q05925 392 aaPredicted RBP9.32□□□□□ -0.92
MSH6-209ENST00000538136 PNNQ9H307 717 aaKnown RBP9.32□□□□□ -0.92
MSH6-209ENST00000538136 FBXW7Q969H0 707 aa9.31□□□□□ -0.92
MSH6-209ENST00000538136 ATF5Q9Y2D1 282 aaPredicted RBP9.31□□□□□ -0.92
MSH6-209ENST00000538136 BTBD11A6QL63 1104 aa9.31□□□□□ -0.92
MSH6-209ENST00000538136 PHACTR3Q96KR7 559 aa9.31□□□□□ -0.92
MSH6-209ENST00000538136 CEP152O94986 1710 aa9.31□□□□□ -0.92
MSH6-209ENST00000538136 FKBP5Q13451 457 aaPredicted RBP9.31□□□□□ -0.92
MSH6-209ENST00000538136 TBC1D2BQ9UPU7 963 aa9.31□□□□□ -0.92
MSH6-209ENST00000538136 ZBTB3Q9H5J0 574 aa9.3□□□□□ -0.92
MSH6-209ENST00000538136 ATP6V1AP38606 617 aa9.3□□□□□ -0.92
MSH6-209ENST00000538136 LGR6Q9HBX8 967 aa9.3□□□□□ -0.92
MSH6-209ENST00000538136 SMG6Q86US8 1419 aaKnown RBP9.3□□□□□ -0.92
MSH6-209ENST00000538136 PTPRUQ92729 1446 aa9.3□□□□□ -0.92
MSH6-209ENST00000538136 G3V3G9 751 aa9.3□□□□□ -0.92
MSH6-209ENST00000538136 TAF7LQ5H9L4 462 aa9.3□□□□□ -0.92
MSH6-209ENST00000538136 DCAF8Q5TAQ9 597 aa9.3□□□□□ -0.92
MSH6-209ENST00000538136 KRT27Q7Z3Y8 459 aa9.3□□□□□ -0.92
MSH6-209ENST00000538136 SPATA31E1Q6ZUB1 1445 aa9.29□□□□□ -0.92
MSH6-209ENST00000538136 FRMPD1Q5SYB0 1578 aa9.29□□□□□ -0.92
MSH6-209ENST00000538136 GOLGA2Q08379 1002 aa9.29□□□□□ -0.92
MSH6-209ENST00000538136 ZNF772Q68DY9 489 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms