RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 HAP1P54257 671 aaPredicted RBP16.43■□□□□ 0.22
CLSTN3-206ENST00000535668 MINK1Q8N4C8 1332 aaPredicted RBP16.43■□□□□ 0.22
CLSTN3-206ENST00000535668 ITSN1Q15811 1721 aa16.42■□□□□ 0.22
CLSTN3-206ENST00000535668 BRD4O60885 1362 aaPredicted RBP16.42■□□□□ 0.22
CLSTN3-206ENST00000535668 NUDT16Q96DE0 195 aaKnown RBP16.42■□□□□ 0.22
CLSTN3-206ENST00000535668 BTG4Q9NY30 223 aa16.42■□□□□ 0.22
CLSTN3-206ENST00000535668 THSD7AQ9UPZ6 1657 aa16.41■□□□□ 0.22
CLSTN3-206ENST00000535668 HIRIP3Q9BW71 556 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-206ENST00000535668 CCDC61Q9Y6R9 512 aa16.41■□□□□ 0.22
CLSTN3-206ENST00000535668 NGDNQ8NEJ9 315 aaKnown RBP16.4■□□□□ 0.22
CLSTN3-206ENST00000535668 TOPAZ1Q8N9V7 1692 aa16.4■□□□□ 0.22
CLSTN3-206ENST00000535668 CPDO75976 1380 aa16.39■□□□□ 0.21
CLSTN3-206ENST00000535668 KDM2AQ9Y2K7 1162 aa16.39■□□□□ 0.21
CLSTN3-206ENST00000535668 LRP5O75197 1615 aa16.38■□□□□ 0.21
CLSTN3-206ENST00000535668 SF3B2Q13435 895 aaKnown RBP16.38■□□□□ 0.21
CLSTN3-206ENST00000535668 LMOD2Q6P5Q4 547 aa16.38■□□□□ 0.21
CLSTN3-206ENST00000535668 NBPF8Q3BBV2 869 aa16.37■□□□□ 0.21
CLSTN3-206ENST00000535668 DEFB132Q7Z7B7 95 aa16.37■□□□□ 0.21
CLSTN3-206ENST00000535668 CDK19Q9BWU1 502 aa16.37■□□□□ 0.21
CLSTN3-206ENST00000535668 USP19O94966 1318 aa16.37■□□□□ 0.21
CLSTN3-206ENST00000535668 SPATA31A1Q5TZJ5 1347 aa16.37■□□□□ 0.21
CLSTN3-206ENST00000535668 FAM98CQ17RN3 349 aaKnown RBP16.36■□□□□ 0.21
CLSTN3-206ENST00000535668 BARGINQ6ZT62 677 aa16.36■□□□□ 0.21
CLSTN3-206ENST00000535668 PRDM11Q9NQV5 511 aa16.36■□□□□ 0.21
CLSTN3-206ENST00000535668 BAG6P46379 1132 aa16.35■□□□□ 0.21
CLSTN3-206ENST00000535668 KIAA0232Q92628 1395 aa16.35■□□□□ 0.21
CLSTN3-206ENST00000535668 CCDC9Q9Y3X0 531 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-206ENST00000535668 ACEP12821 1306 aa16.34■□□□□ 0.21
CLSTN3-206ENST00000535668 PARD3Q8TEW0 1356 aa16.34■□□□□ 0.21
CLSTN3-206ENST00000535668 PHRF1Q9P1Y6 1649 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-206ENST00000535668 RGPD1P0DJD0 1748 aa16.33■□□□□ 0.21
CLSTN3-206ENST00000535668 LMO7Q8WWI1 1683 aa16.32■□□□□ 0.2
CLSTN3-206ENST00000535668 FAM196AQ6ZSG2 479 aa16.31■□□□□ 0.2
CLSTN3-206ENST00000535668 THRAP3Q9Y2W1 955 aaKnown RBP16.31■□□□□ 0.2
CLSTN3-206ENST00000535668 SSH2Q76I76 1423 aa16.3■□□□□ 0.2
CLSTN3-206ENST00000535668 C11orf95C9JLR9 678 aaPredicted RBP16.3■□□□□ 0.2
CLSTN3-206ENST00000535668 PAK3O75914 559 aaPredicted RBP16.3■□□□□ 0.2
CLSTN3-206ENST00000535668 NBPF1Q3BBV0 1214 aa16.3■□□□□ 0.2
CLSTN3-206ENST00000535668 NRKQ7Z2Y5 1582 aa16.3■□□□□ 0.2
CLSTN3-206ENST00000535668 CAMTA1Q9Y6Y1 1673 aa16.29■□□□□ 0.2
CLSTN3-206ENST00000535668 TNS1Q9HBL0 1735 aaKnown RBP16.28■□□□□ 0.2
CLSTN3-206ENST00000535668 CENPJQ9HC77 1338 aaPredicted RBP16.28■□□□□ 0.2
CLSTN3-206ENST00000535668 CAMKK2Q96RR4 588 aa16.28■□□□□ 0.2
CLSTN3-206ENST00000535668 GCP02774 474 aa16.27■□□□□ 0.2
CLSTN3-206ENST00000535668 NLRP13Q86W25 1043 aa16.27■□□□□ 0.2
CLSTN3-206ENST00000535668 ABTB2Q8N961 1025 aa16.26■□□□□ 0.19
CLSTN3-206ENST00000535668 AATKQ6ZMQ8 1374 aa16.26■□□□□ 0.19
CLSTN3-206ENST00000535668 USP6P35125 1406 aa16.25■□□□□ 0.19
CLSTN3-206ENST00000535668 PPIP5K1Q6PFW1 1433 aa16.25■□□□□ 0.19
CLSTN3-206ENST00000535668 SLIT3O75094 1523 aa16.24■□□□□ 0.19
CLSTN3-206ENST00000535668 EN1Q05925 392 aaPredicted RBP16.24■□□□□ 0.19
CLSTN3-206ENST00000535668 TCP11L2Q8N4U5 519 aa16.24■□□□□ 0.19
CLSTN3-206ENST00000535668 BCL9O00512 1426 aa16.24■□□□□ 0.19
CLSTN3-206ENST00000535668 COL5A2P05997 1499 aaPredicted RBP16.23■□□□□ 0.19
CLSTN3-206ENST00000535668 ZC3H6P61129 1189 aaKnown RBP16.23■□□□□ 0.19
CLSTN3-206ENST00000535668 CHRNA2Q15822 529 aa16.23■□□□□ 0.19
CLSTN3-206ENST00000535668 PARP4Q9UKK3 1724 aaKnown RBP16.22■□□□□ 0.19
CLSTN3-206ENST00000535668 A0A0G2JS52 829 aa16.21■□□□□ 0.19
CLSTN3-206ENST00000535668 PLEKHG5O94827 1062 aa16.21■□□□□ 0.19
CLSTN3-206ENST00000535668 MYT1Q01538 1121 aa16.21■□□□□ 0.19
CLSTN3-206ENST00000535668 LARP1Q6PKG0 1096 aaKnown RBP16.21■□□□□ 0.19
CLSTN3-206ENST00000535668 L3MBTL2Q969R5 705 aa16.21■□□□□ 0.19
CLSTN3-206ENST00000535668 ZNF692Q9BU19 519 aaPredicted RBP16.21■□□□□ 0.19
CLSTN3-206ENST00000535668 SBNO2Q9Y2G9 1366 aa16.21■□□□□ 0.19
CLSTN3-206ENST00000535668 CRB1P82279 1406 aa16.2■□□□□ 0.18
CLSTN3-206ENST00000535668 SRPK2P78362 688 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-206ENST00000535668 COL18A1P39060 1754 aa16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 RREB1Q92766 1687 aa16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 EVA1CP58658 441 aa16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 FAM182BQ5T319 152 aa16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 CABP2Q9NPB3 220 aa16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 STRN4Q9NRL3 753 aa16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 CABP1Q9NZU7 370 aa16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 ABCC6O95255 1503 aa16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 CPSF1Q10570 1443 aaKnown RBP16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 EVC2Q86UK5 1308 aa16.19■□□□□ 0.18
CLSTN3-206ENST00000535668 RGPD3A6NKT7 1758 aaPredicted RBP16.18■□□□□ 0.18
CLSTN3-206ENST00000535668 RGPD4Q7Z3J3 1758 aa16.18■□□□□ 0.18
CLSTN3-206ENST00000535668 QRICH2Q9H0J4 1663 aa16.18■□□□□ 0.18
CLSTN3-206ENST00000535668 PDE3BQ13370 1112 aa16.18■□□□□ 0.18
CLSTN3-206ENST00000535668 EZH2Q15910 746 aaKnown RBP16.18■□□□□ 0.18
CLSTN3-206ENST00000535668 NUTM2GQ5VZR2 741 aa16.18■□□□□ 0.18
CLSTN3-206ENST00000535668 PEAK1Q9H792 1746 aa16.18■□□□□ 0.18
CLSTN3-206ENST00000535668 TRPM1Q7Z4N2 1603 aa16.17■□□□□ 0.18
CLSTN3-206ENST00000535668 PLSCR1O15162 318 aa16.17■□□□□ 0.18
CLSTN3-206ENST00000535668 TRIM37O94972 964 aa16.17■□□□□ 0.18
CLSTN3-206ENST00000535668 CDCA7Q9BWT1 371 aaPredicted RBP16.17■□□□□ 0.18
CLSTN3-206ENST00000535668 TTC21AQ8NDW8 1320 aa16.17■□□□□ 0.18
CLSTN3-206ENST00000535668 ARHGEF25Q86VW2 580 aa16.16■□□□□ 0.18
CLSTN3-206ENST00000535668 PSDA5PKW4 1024 aaPredicted RBP16.15■□□□□ 0.18
CLSTN3-206ENST00000535668 APBA3O96018 575 aa16.15■□□□□ 0.18
CLSTN3-206ENST00000535668 NLRP6P59044 892 aa16.15■□□□□ 0.18
CLSTN3-206ENST00000535668 KCNH5Q8NCM2 988 aa16.15■□□□□ 0.18
CLSTN3-206ENST00000535668 PIK3C2AO00443 1686 aa16.14■□□□□ 0.18
CLSTN3-206ENST00000535668 OVOS2A0A0G2JMS6 1433 aa16.14■□□□□ 0.17
CLSTN3-206ENST00000535668 OVOS2A0A0J9YW53 1432 aa16.14■□□□□ 0.17
CLSTN3-206ENST00000535668 OVOS2Q6IE36 1432 aa16.14■□□□□ 0.17
CLSTN3-206ENST00000535668 R3HDM1Q15032 1099 aaKnown RBP16.14■□□□□ 0.17
CLSTN3-206ENST00000535668 PUS7Q96PZ0 661 aaKnown RBP16.14■□□□□ 0.17
CLSTN3-206ENST00000535668 WDR17Q8IZU2 1322 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms