RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SOCS7O14512 581 aa9.72□□□□□ -0.85
USP28-202ENST00000535607 CTDSPL2Q05D32 466 aa9.72□□□□□ -0.85
USP28-202ENST00000535607 DIEXFQ68CQ4 756 aaKnown RBP9.72□□□□□ -0.85
USP28-202ENST00000535607 PROSER2Q86WR7 435 aaPredicted RBP9.72□□□□□ -0.85
USP28-202ENST00000535607 CCER1Q8TC90 406 aaPredicted RBP9.72□□□□□ -0.85
USP28-202ENST00000535607 FBXO31Q5XUX0 539 aaPredicted RBP9.71□□□□□ -0.86
USP28-202ENST00000535607 RNF19BQ6ZMZ0 732 aa9.71□□□□□ -0.86
USP28-202ENST00000535607 SPSB2Q99619 263 aa9.71□□□□□ -0.86
USP28-202ENST00000535607 NDUFB9Q9Y6M9 179 aa9.71□□□□□ -0.86
USP28-202ENST00000535607 CLSPNQ9HAW4 1339 aa9.71□□□□□ -0.86
USP28-202ENST00000535607 CUX2O14529 1486 aa9.71□□□□□ -0.86
USP28-202ENST00000535607 ABCA10Q8WWZ4 1543 aa9.71□□□□□ -0.86
USP28-202ENST00000535607 ABL2P42684 1182 aa9.7□□□□□ -0.86
USP28-202ENST00000535607 NEUROD1Q13562 356 aa9.7□□□□□ -0.86
USP28-202ENST00000535607 DESI1Q6ICB0 168 aa9.7□□□□□ -0.86
USP28-202ENST00000535607 BRICD5Q6PL45 260 aa9.7□□□□□ -0.86
USP28-202ENST00000535607 MTMR14Q8NCE2 650 aa9.7□□□□□ -0.86
USP28-202ENST00000535607 IFT140Q96RY7 1462 aa9.7□□□□□ -0.86
USP28-202ENST00000535607 TARBP1Q13395 1621 aaKnown RBP9.7□□□□□ -0.86
USP28-202ENST00000535607 IL21Q9HBE4 155 aa9.69□□□□□ -0.86
USP28-202ENST00000535607 MTRQ99707 1265 aa9.68□□□□□ -0.86
USP28-202ENST00000535607 GDPD2Q9HCC8 539 aa9.68□□□□□ -0.86
USP28-202ENST00000535607 COG6Q9Y2V7 657 aa9.68□□□□□ -0.86
USP28-202ENST00000535607 JUNDP17535 347 aa9.67□□□□□ -0.86
USP28-202ENST00000535607 HCSTQ9UBK5 93 aa9.67□□□□□ -0.86
USP28-202ENST00000535607 ABCA5Q8WWZ7 1642 aa9.67□□□□□ -0.86
USP28-202ENST00000535607 SOGA1O94964 1423 aa9.66□□□□□ -0.86
USP28-202ENST00000535607 TRAK2O60296 914 aa9.66□□□□□ -0.86
USP28-202ENST00000535607 ZPR1O75312 459 aa9.66□□□□□ -0.86
USP28-202ENST00000535607 LRRN4Q8WUT4 740 aa9.66□□□□□ -0.86
USP28-202ENST00000535607 RNF166Q96A37 237 aaPredicted RBP9.66□□□□□ -0.86
USP28-202ENST00000535607 POM121Q96HA1 1249 aa9.66□□□□□ -0.86
USP28-202ENST00000535607 ZNF330Q9Y3S2 320 aaPredicted RBP9.66□□□□□ -0.86
USP28-202ENST00000535607 KIF27Q86VH2 1401 aa9.65□□□□□ -0.86
USP28-202ENST00000535607 ADH1BP00325 375 aa9.65□□□□□ -0.86
USP28-202ENST00000535607 CTHP32929 405 aa9.65□□□□□ -0.86
USP28-202ENST00000535607 MSS51Q4VC12 460 aa9.65□□□□□ -0.86
USP28-202ENST00000535607 PTPRNQ16849 979 aa9.64□□□□□ -0.87
USP28-202ENST00000535607 LYPD8Q6UX82 237 aa9.64□□□□□ -0.87
USP28-202ENST00000535607 THAP11Q96EK4 314 aa9.64□□□□□ -0.87
USP28-202ENST00000535607 TBC1D2BQ9UPU7 963 aa9.64□□□□□ -0.87
USP28-202ENST00000535607 WASHC4Q2M389 1173 aa9.63□□□□□ -0.87
USP28-202ENST00000535607 ERICH3Q5RHP9 1530 aa9.62□□□□□ -0.87
USP28-202ENST00000535607 CUL7Q14999 1698 aa9.62□□□□□ -0.87
USP28-202ENST00000535607 RAD54L2Q9Y4B4 1467 aa9.62□□□□□ -0.87
USP28-202ENST00000535607 SLC6A16Q9GZN6 736 aa9.62□□□□□ -0.87
USP28-202ENST00000535607 HMX1Q9NP08 348 aaPredicted RBP9.62□□□□□ -0.87
USP28-202ENST00000535607 EIF4G3O43432 1585 aaKnown RBP9.62□□□□□ -0.87
USP28-202ENST00000535607 PER1O15534 1290 aaPredicted RBP9.61□□□□□ -0.87
USP28-202ENST00000535607 TLL1O43897 1013 aa9.61□□□□□ -0.87
USP28-202ENST00000535607 CCNYL3P0C7X3 344 aa9.61□□□□□ -0.87
USP28-202ENST00000535607 NR6A1Q15406 480 aa9.61□□□□□ -0.87
USP28-202ENST00000535607 CCDC24Q8N4L8 307 aa9.61□□□□□ -0.87
USP28-202ENST00000535607 NUDT12Q9BQG2 462 aa9.61□□□□□ -0.87
USP28-202ENST00000535607 ARID3CA6NKF2 412 aa9.6□□□□□ -0.87
USP28-202ENST00000535607 KCNC4Q03721 635 aa9.6□□□□□ -0.87
USP28-202ENST00000535607 ARMC2Q8NEN0 867 aa9.6□□□□□ -0.87
USP28-202ENST00000535607 CCDC97Q96F63 343 aaPredicted RBP9.6□□□□□ -0.87
USP28-202ENST00000535607 ZNF777Q9ULD5 760 aaPredicted RBP9.6□□□□□ -0.87
USP28-202ENST00000535607 PBRM1Q86U86 1689 aa9.6□□□□□ -0.87
USP28-202ENST00000535607 KIF21BO75037 1637 aa9.6□□□□□ -0.87
USP28-202ENST00000535607 GAPVD1Q14C86 1478 aa9.59□□□□□ -0.87
USP28-202ENST00000535607 GGCXP38435 758 aa9.59□□□□□ -0.87
USP28-202ENST00000535607 TJAP1Q5JTD0 557 aa9.59□□□□□ -0.87
USP28-202ENST00000535607 GJD4Q96KN9 370 aaPredicted RBP9.59□□□□□ -0.87
USP28-202ENST00000535607 ARID3AQ99856 593 aa9.59□□□□□ -0.87
USP28-202ENST00000535607 DXOO77932 396 aaKnown RBP9.58□□□□□ -0.88
USP28-202ENST00000535607 MMP16P51512 607 aa9.57□□□□□ -0.88
USP28-202ENST00000535607 FAM160A2Q8N612 972 aaPredicted RBP9.57□□□□□ -0.88
USP28-202ENST00000535607 ZNF516Q92618 1163 aa9.57□□□□□ -0.88
USP28-202ENST00000535607 TRIM34Q9BYJ4 488 aa9.57□□□□□ -0.88
USP28-202ENST00000535607 GRIN2BQ13224 1484 aa9.57□□□□□ -0.88
USP28-202ENST00000535607 ADAMTS12P58397 1594 aa9.56□□□□□ -0.88
USP28-202ENST00000535607 SPNS2Q8IVW8 549 aa9.56□□□□□ -0.88
USP28-202ENST00000535607 PRDM9Q9NQV7 894 aa9.56□□□□□ -0.88
USP28-202ENST00000535607 ZC3H4Q9UPT8 1303 aaKnown RBP9.56□□□□□ -0.88
USP28-202ENST00000535607 MAGI1Q96QZ7 1491 aaPredicted RBP9.55□□□□□ -0.88
USP28-202ENST00000535607 PRXQ9BXM0 1461 aa9.55□□□□□ -0.88
USP28-202ENST00000535607 KCNH2Q12809 1159 aa9.55□□□□□ -0.88
USP28-202ENST00000535607 NBPF14Q5TI25 921 aa9.55□□□□□ -0.88
USP28-202ENST00000535607 FNBP4Q8N3X1 1017 aaPredicted RBP9.55□□□□□ -0.88
USP28-202ENST00000535607 CALR3Q96L12 384 aaKnown RBP9.55□□□□□ -0.88
USP28-202ENST00000535607 MAP10Q9P2G4 905 aa9.55□□□□□ -0.88
USP28-202ENST00000535607 FKBPLQ9UIM3 349 aa9.55□□□□□ -0.88
USP28-202ENST00000535607 ZNF608Q9ULD9 1512 aaPredicted RBP9.55□□□□□ -0.88
USP28-202ENST00000535607 EPS8L1Q8TE68 723 aa9.54□□□□□ -0.88
USP28-202ENST00000535607 ZNF592Q92610 1267 aa9.54□□□□□ -0.88
USP28-202ENST00000535607 EVA1BQ9NVM1 165 aa9.54□□□□□ -0.88
USP28-202ENST00000535607 RUSC2Q8N2Y8 1516 aa9.54□□□□□ -0.88
USP28-202ENST00000535607 ZBTB24O43167 697 aaPredicted RBP9.53□□□□□ -0.88
USP28-202ENST00000535607 S1PR4O95977 384 aa9.53□□□□□ -0.88
USP28-202ENST00000535607 EIF4G2P78344 907 aaKnown RBP eCLIP9.53□□□□□ -0.88
USP28-202ENST00000535607 SERPINA10Q9UK55 444 aa9.53□□□□□ -0.88
USP28-202ENST00000535607 GOLGA3Q08378 1498 aa9.53□□□□□ -0.88
USP28-202ENST00000535607 TDRD9Q8NDG6 1382 aaKnown RBP9.52□□□□□ -0.88
USP28-202ENST00000535607 F12P00748 615 aaPredicted RBP9.52□□□□□ -0.89
USP28-202ENST00000535607 SEMA3FQ13275 785 aa9.52□□□□□ -0.89
USP28-202ENST00000535607 GPKOWQ92917 476 aaPredicted RBP eCLIP9.52□□□□□ -0.89
USP28-202ENST00000535607 IGF1RP08069 1367 aa9.51□□□□□ -0.89
USP28-202ENST00000535607 SOX11P35716 441 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms