RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 C8orf34Q49A92 452 aa22.72■■□□□ 1.23
USH1C-205ENST00000527020 MYH16Q9H6N6 1097 aa22.72■■□□□ 1.23
USH1C-205ENST00000527020 TNNQ9UQP3 1299 aa22.72■■□□□ 1.23
USH1C-205ENST00000527020 RLBP1P12271 317 aa22.7■■□□□ 1.23
USH1C-205ENST00000527020 TMPOP42166 694 aaKnown RBP22.7■■□□□ 1.23
USH1C-205ENST00000527020 CDC42BPGQ6DT37 1551 aa22.7■■□□□ 1.22
USH1C-205ENST00000527020 TRIM35Q9UPQ4 493 aa22.7■■□□□ 1.22
USH1C-205ENST00000527020 VIRMAQ69YN4 1812 aaKnown RBP22.69■■□□□ 1.22
USH1C-205ENST00000527020 KNDC1Q76NI1 1749 aa22.69■■□□□ 1.22
USH1C-205ENST00000527020 FAM161AQ3B820 660 aa22.69■■□□□ 1.22
USH1C-205ENST00000527020 BCL2L13Q9BXK5 485 aa22.69■■□□□ 1.22
USH1C-205ENST00000527020 MAP2P11137 1827 aaKnown RBP22.68■■□□□ 1.22
USH1C-205ENST00000527020 METP08581 1390 aa22.68■■□□□ 1.22
USH1C-205ENST00000527020 RGS3P49796 1198 aa22.68■■□□□ 1.22
USH1C-205ENST00000527020 ZMYM3Q14202 1370 aa22.68■■□□□ 1.22
USH1C-205ENST00000527020 DIAPH1O60610 1272 aaKnown RBP22.66■■□□□ 1.22
USH1C-205ENST00000527020 TSR2Q969E8 191 aaKnown RBP22.66■■□□□ 1.22
USH1C-205ENST00000527020 NBR1Q14596 966 aa22.66■■□□□ 1.22
USH1C-205ENST00000527020 CPSF1Q10570 1443 aaKnown RBP22.65■■□□□ 1.22
USH1C-205ENST00000527020 LRRC7Q96NW7 1537 aa22.65■■□□□ 1.22
USH1C-205ENST00000527020 MAPK8IP3Q9UPT6 1336 aa22.64■■□□□ 1.22
USH1C-205ENST00000527020 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.64■■□□□ 1.21
USH1C-205ENST00000527020 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.63■■□□□ 1.21
USH1C-205ENST00000527020 WASLO00401 505 aaPredicted RBP22.62■■□□□ 1.21
USH1C-205ENST00000527020 CT47B1P0C2W7 299 aaPredicted RBP22.62■■□□□ 1.21
USH1C-205ENST00000527020 FBLN1P23142 703 aa22.62■■□□□ 1.21
USH1C-205ENST00000527020 AAMPQ13685 434 aa22.62■■□□□ 1.21
USH1C-205ENST00000527020 POLKQ9UBT6 870 aa22.62■■□□□ 1.21
USH1C-205ENST00000527020 MON2Q7Z3U7 1717 aa22.62■■□□□ 1.21
USH1C-205ENST00000527020 UBR1Q8IWV7 1749 aa22.62■■□□□ 1.21
USH1C-205ENST00000527020 PPIP5K1Q6PFW1 1433 aa22.62■■□□□ 1.21
USH1C-205ENST00000527020 PCDHB15Q9Y5E8 787 aa22.62■■□□□ 1.21
USH1C-205ENST00000527020 TECPR2O15040 1411 aa22.61■■□□□ 1.21
USH1C-205ENST00000527020 EXOSC9Q06265 439 aaKnown RBP22.61■■□□□ 1.21
USH1C-205ENST00000527020 CPS1P31327 1500 aa22.61■■□□□ 1.21
USH1C-205ENST00000527020 IL16Q14005 1332 aa22.61■■□□□ 1.21
USH1C-205ENST00000527020 EDC4Q6P2E9 1401 aaKnown RBP22.61■■□□□ 1.21
USH1C-205ENST00000527020 FAM135BQ49AJ0 1406 aa22.6■■□□□ 1.21
USH1C-205ENST00000527020 AKAP12Q02952 1782 aa22.6■■□□□ 1.21
USH1C-205ENST00000527020 RIPK4P57078 832 aa22.59■■□□□ 1.21
USH1C-205ENST00000527020 TXNDC2Q86VQ3 553 aa22.59■■□□□ 1.21
USH1C-205ENST00000527020 DDRGK1Q96HY6 314 aa22.58■■□□□ 1.21
USH1C-205ENST00000527020 TNRQ92752 1358 aa22.58■■□□□ 1.21
USH1C-205ENST00000527020 FCHSD2O94868 740 aa22.57■■□□□ 1.2
USH1C-205ENST00000527020 RSPH6AQ9H0K4 717 aa22.57■■□□□ 1.2
USH1C-205ENST00000527020 ZKSCAN2Q63HK3 967 aa22.57■■□□□ 1.2
USH1C-205ENST00000527020 MVPQ14764 893 aaKnown RBP22.56■■□□□ 1.2
USH1C-205ENST00000527020 PMFBP1Q8TBY8 1022 aa22.56■■□□□ 1.2
USH1C-205ENST00000527020 SIRT1Q96EB6 747 aa22.56■■□□□ 1.2
USH1C-205ENST00000527020 PNNQ9H307 717 aaKnown RBP22.56■■□□□ 1.2
USH1C-205ENST00000527020 ESF1Q9H501 851 aaKnown RBP22.56■■□□□ 1.2
USH1C-205ENST00000527020 ITSN1Q15811 1721 aa22.56■■□□□ 1.2
USH1C-205ENST00000527020 C3P01024 1663 aa22.56■■□□□ 1.2
USH1C-205ENST00000527020 NME9Q86XW9 330 aa22.55■■□□□ 1.2
USH1C-205ENST00000527020 NCKAP5LQ9HCH0 1330 aa22.55■■□□□ 1.2
USH1C-205ENST00000527020 SSH1Q8WYL5 1049 aa22.55■■□□□ 1.2
USH1C-205ENST00000527020 NUDT16Q96DE0 195 aaKnown RBP22.54■■□□□ 1.2
USH1C-205ENST00000527020 ZRANB1Q9UGI0 708 aa22.54■■□□□ 1.2
USH1C-205ENST00000527020 TMEM2Q9UHN6 1383 aa22.54■■□□□ 1.2
USH1C-205ENST00000527020 PPM1GO15355 546 aaPredicted RBP22.53■■□□□ 1.2
USH1C-205ENST00000527020 PRKAR2BP31323 418 aa22.53■■□□□ 1.2
USH1C-205ENST00000527020 SMC4Q9NTJ3 1288 aa22.53■■□□□ 1.2
USH1C-205ENST00000527020 CDK12Q9NYV4 1490 aaPredicted RBP22.53■■□□□ 1.2
USH1C-205ENST00000527020 DZIP1LQ8IYY4 767 aaKnown RBP22.53■■□□□ 1.2
USH1C-205ENST00000527020 EMILIN1Q9Y6C2 1016 aa22.53■■□□□ 1.2
USH1C-205ENST00000527020 TRIM27P14373 513 aa22.52■■□□□ 1.2
USH1C-205ENST00000527020 ADAMTS13Q76LX8 1427 aa22.51■■□□□ 1.19
USH1C-205ENST00000527020 AATKQ6ZMQ8 1374 aa22.51■■□□□ 1.19
USH1C-205ENST00000527020 HDGFP51858 240 aaKnown RBP22.5■■□□□ 1.19
USH1C-205ENST00000527020 LAS1LQ9Y4W2 734 aaKnown RBP22.5■■□□□ 1.19
USH1C-205ENST00000527020 CCDC61Q9Y6R9 512 aa22.5■■□□□ 1.19
USH1C-205ENST00000527020 PRR36Q9H6K5 1346 aa22.5■■□□□ 1.19
USH1C-205ENST00000527020 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.5■■□□□ 1.19
USH1C-205ENST00000527020 IL13P35225 146 aa22.5■■□□□ 1.19
USH1C-205ENST00000527020 PHACTR3Q96KR7 559 aa22.5■■□□□ 1.19
USH1C-205ENST00000527020 DLG5Q8TDM6 1919 aa22.5■■□□□ 1.19
USH1C-205ENST00000527020 ROBO2Q9HCK4 1378 aa22.49■■□□□ 1.19
USH1C-205ENST00000527020 FTSJ3Q8IY81 847 aaKnown RBP22.49■■□□□ 1.19
USH1C-205ENST00000527020 HMOX1P09601 288 aa22.48■■□□□ 1.19
USH1C-205ENST00000527020 DEKP35659 375 aaKnown RBP22.48■■□□□ 1.19
USH1C-205ENST00000527020 USP19O94966 1318 aa22.48■■□□□ 1.19
USH1C-205ENST00000527020 TOPAZ1Q8N9V7 1692 aa22.48■■□□□ 1.19
USH1C-205ENST00000527020 ATF7IPQ6VMQ6 1270 aa22.48■■□□□ 1.19
USH1C-205ENST00000527020 RWDD1Q9H446 243 aaPredicted RBP22.48■■□□□ 1.19
USH1C-205ENST00000527020 PDZRN3Q9UPQ7 1066 aa22.48■■□□□ 1.19
USH1C-205ENST00000527020 NFE2L2Q16236 605 aa22.47■■□□□ 1.19
USH1C-205ENST00000527020 NOB1Q9ULX3 412 aaKnown RBP22.47■■□□□ 1.19
USH1C-205ENST00000527020 NRKQ7Z2Y5 1582 aa22.47■■□□□ 1.19
USH1C-205ENST00000527020 SLC4A3P48751 1232 aa22.46■■□□□ 1.19
USH1C-205ENST00000527020 SEC24BO95487 1268 aa22.45■■□□□ 1.18
USH1C-205ENST00000527020 COG3Q96JB2 828 aa22.44■■□□□ 1.18
USH1C-205ENST00000527020 RTL5Q5HYW3 569 aaPredicted RBP22.43■■□□□ 1.18
USH1C-205ENST00000527020 LTKP29376 864 aa22.43■■□□□ 1.18
USH1C-205ENST00000527020 RRS1Q15050 365 aaKnown RBP22.42■■□□□ 1.18
USH1C-205ENST00000527020 ALDH1L2Q3SY69 923 aa22.42■■□□□ 1.18
USH1C-205ENST00000527020 THUMPD2Q9BTF0 503 aaKnown RBP22.42■■□□□ 1.18
USH1C-205ENST00000527020 PLEKHG1Q9ULL1 1385 aa22.42■■□□□ 1.18
USH1C-205ENST00000527020 NEFMP07197 916 aa22.42■■□□□ 1.18
USH1C-205ENST00000527020 DDX19BQ9UMR2 479 aa22.42■■□□□ 1.18
USH1C-205ENST00000527020 KIF16BQ96L93 1317 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms