RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 DAXXQ9UER7 740 aaPredicted RBP27.26■■□□□ 1.96
VPS28-205ENST00000526204 TSPOAP1O95153 1857 aa27.26■■□□□ 1.95
VPS28-205ENST00000526204 ANKRD26Q9UPS8 1709 aa27.26■■□□□ 1.95
VPS28-205ENST00000526204 SENP3Q9H4L4 574 aaPredicted RBP27.26■■□□□ 1.95
VPS28-205ENST00000526204 TMPOP42166 694 aaKnown RBP27.25■■□□□ 1.95
VPS28-205ENST00000526204 LAS1LQ9Y4W2 734 aaKnown RBP27.24■■□□□ 1.95
VPS28-205ENST00000526204 IL16Q14005 1332 aa27.24■■□□□ 1.95
VPS28-205ENST00000526204 DLC1Q96QB1 1528 aa27.23■■□□□ 1.95
VPS28-205ENST00000526204 PNPLA6Q8IY17 1366 aa27.23■■□□□ 1.95
VPS28-205ENST00000526204 RLBP1P12271 317 aa27.23■■□□□ 1.95
VPS28-205ENST00000526204 DIAPH1O60610 1272 aaKnown RBP27.22■■□□□ 1.95
VPS28-205ENST00000526204 BCL2L13Q9BXK5 485 aa27.22■■□□□ 1.95
VPS28-205ENST00000526204 NEFMP07197 916 aa27.21■■□□□ 1.95
VPS28-205ENST00000526204 ZKSCAN2Q63HK3 967 aa27.21■■□□□ 1.95
VPS28-205ENST00000526204 CABP1Q9NZU7 370 aa27.21■■□□□ 1.95
VPS28-205ENST00000526204 ZMYM3Q14202 1370 aa27.21■■□□□ 1.95
VPS28-205ENST00000526204 TRIM35Q9UPQ4 493 aa27.2■■□□□ 1.94
VPS28-205ENST00000526204 A2ML1A8K2U0 1454 aa27.2■■□□□ 1.94
VPS28-205ENST00000526204 RWDD1Q9H446 243 aaPredicted RBP27.19■■□□□ 1.94
VPS28-205ENST00000526204 PCDHB15Q9Y5E8 787 aa27.19■■□□□ 1.94
VPS28-205ENST00000526204 SPATA31D1Q6ZQQ2 1576 aa27.18■■□□□ 1.94
VPS28-205ENST00000526204 MVPQ14764 893 aaKnown RBP27.18■■□□□ 1.94
VPS28-205ENST00000526204 RIMS2Q9UQ26 1411 aa27.16■■□□□ 1.94
VPS28-205ENST00000526204 DZIP1LQ8IYY4 767 aaKnown RBP27.16■■□□□ 1.94
VPS28-205ENST00000526204 ATP7BP35670 1465 aa27.16■■□□□ 1.94
VPS28-205ENST00000526204 FTSJ3Q8IY81 847 aaKnown RBP27.16■■□□□ 1.94
VPS28-205ENST00000526204 TSR2Q969E8 191 aaKnown RBP27.16■■□□□ 1.94
VPS28-205ENST00000526204 TNNQ9UQP3 1299 aa27.16■■□□□ 1.94
VPS28-205ENST00000526204 FCHSD2O94868 740 aa27.15■■□□□ 1.94
VPS28-205ENST00000526204 EXOSC9Q06265 439 aaKnown RBP27.14■■□□□ 1.94
VPS28-205ENST00000526204 RIPK4P57078 832 aa27.14■■□□□ 1.93
VPS28-205ENST00000526204 SMC4Q9NTJ3 1288 aa27.13■■□□□ 1.93
VPS28-205ENST00000526204 KIF20BQ96Q89 1820 aa27.12■■□□□ 1.93
VPS28-205ENST00000526204 CDC42BPGQ6DT37 1551 aa27.11■■□□□ 1.93
VPS28-205ENST00000526204 VIRMAQ69YN4 1812 aaKnown RBP27.1■■□□□ 1.93
VPS28-205ENST00000526204 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.1■■□□□ 1.93
VPS28-205ENST00000526204 KIF13AQ9H1H9 1805 aa27.1■■□□□ 1.93
VPS28-205ENST00000526204 WAPLQ7Z5K2 1190 aa27.1■■□□□ 1.93
VPS28-205ENST00000526204 SLC4A3P48751 1232 aa27.08■■□□□ 1.93
VPS28-205ENST00000526204 SSH1Q8WYL5 1049 aa27.08■■□□□ 1.93
VPS28-205ENST00000526204 PDZRN3Q9UPQ7 1066 aa27.08■■□□□ 1.93
VPS28-205ENST00000526204 POLKQ9UBT6 870 aa27.07■■□□□ 1.92
VPS28-205ENST00000526204 DDX19BQ9UMR2 479 aa27.07■■□□□ 1.92
VPS28-205ENST00000526204 ATF7IPQ6VMQ6 1270 aa27.07■■□□□ 1.92
VPS28-205ENST00000526204 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.07■■□□□ 1.92
VPS28-205ENST00000526204 SETD1AO15047 1707 aaKnown RBP27.06■■□□□ 1.92
VPS28-205ENST00000526204 USP19O94966 1318 aa27.06■■□□□ 1.92
VPS28-205ENST00000526204 TRIM27P14373 513 aa27.06■■□□□ 1.92
VPS28-205ENST00000526204 IPO8O15397 1037 aaKnown RBP27.05■■□□□ 1.92
VPS28-205ENST00000526204 KIF16BQ96L93 1317 aa27.04■■□□□ 1.92
VPS28-205ENST00000526204 EDC4Q6P2E9 1401 aaKnown RBP27.04■■□□□ 1.92
VPS28-205ENST00000526204 WASLO00401 505 aaPredicted RBP27.04■■□□□ 1.92
VPS28-205ENST00000526204 RSPH6AQ9H0K4 717 aa27.04■■□□□ 1.92
VPS28-205ENST00000526204 CPSF1Q10570 1443 aaKnown RBP27.04■■□□□ 1.92
VPS28-205ENST00000526204 ALDH1L2Q3SY69 923 aa27.03■■□□□ 1.92
VPS28-205ENST00000526204 FAM135BQ49AJ0 1406 aa27.03■■□□□ 1.92
VPS28-205ENST00000526204 ZNF428Q96B54 188 aa27.03■■□□□ 1.92
VPS28-205ENST00000526204 HDGFP51858 240 aaKnown RBP27.02■■□□□ 1.92
VPS28-205ENST00000526204 HDAC1Q13547 482 aaPredicted RBP27.02■■□□□ 1.92
VPS28-205ENST00000526204 SIRT1Q96EB6 747 aa27.02■■□□□ 1.92
VPS28-205ENST00000526204 PRKAR2BP31323 418 aa27.01■■□□□ 1.91
VPS28-205ENST00000526204 UPF2Q9HAU5 1272 aaKnown RBP27.01■■□□□ 1.91
VPS28-205ENST00000526204 NOB1Q9ULX3 412 aaKnown RBP27.01■■□□□ 1.91
VPS28-205ENST00000526204 LRRC7Q96NW7 1537 aa27.01■■□□□ 1.91
VPS28-205ENST00000526204 MLECQ14165 292 aa27.01■■□□□ 1.91
VPS28-205ENST00000526204 CALD1Q05682 793 aaKnown RBP27■■□□□ 1.91
VPS28-205ENST00000526204 NFKBIBQ15653 356 aa27■■□□□ 1.91
VPS28-205ENST00000526204 ITPRIPQ8IWB1 547 aa27■■□□□ 1.91
VPS28-205ENST00000526204 SEC24BO95487 1268 aa26.99■■□□□ 1.91
VPS28-205ENST00000526204 ESF1Q9H501 851 aaKnown RBP26.99■■□□□ 1.91
VPS28-205ENST00000526204 PPIP5K1Q6PFW1 1433 aa26.99■■□□□ 1.91
VPS28-205ENST00000526204 AATKQ6ZMQ8 1374 aa26.98■■□□□ 1.91
VPS28-205ENST00000526204 METP08581 1390 aa26.97■■□□□ 1.91
VPS28-205ENST00000526204 BRPF1P55201 1214 aaPredicted RBP26.97■■□□□ 1.91
VPS28-205ENST00000526204 BECN1Q14457 450 aa26.97■■□□□ 1.91
VPS28-205ENST00000526204 NFE2L2Q16236 605 aa26.97■■□□□ 1.91
VPS28-205ENST00000526204 NRXN3Q9Y4C0 1643 aa26.97■■□□□ 1.91
VPS28-205ENST00000526204 TECPR2O15040 1411 aa26.95■■□□□ 1.9
VPS28-205ENST00000526204 CDK12Q9NYV4 1490 aaPredicted RBP26.94■■□□□ 1.9
VPS28-205ENST00000526204 CCDC61Q9Y6R9 512 aa26.94■■□□□ 1.9
VPS28-205ENST00000526204 NUDT16Q96DE0 195 aaKnown RBP26.93■■□□□ 1.9
VPS28-205ENST00000526204 ZBTB40Q9NUA8 1239 aa26.93■■□□□ 1.9
VPS28-205ENST00000526204 IL13P35225 146 aa26.93■■□□□ 1.9
VPS28-205ENST00000526204 TMEM57Q8N5G2 664 aa26.93■■□□□ 1.9
VPS28-205ENST00000526204 FBLN1P23142 703 aa26.92■■□□□ 1.9
VPS28-205ENST00000526204 TXNDC2Q86VQ3 553 aa26.92■■□□□ 1.9
VPS28-205ENST00000526204 NME9Q86XW9 330 aa26.91■■□□□ 1.9
VPS28-205ENST00000526204 SMC5Q8IY18 1101 aa26.91■■□□□ 1.9
VPS28-205ENST00000526204 COG3Q96JB2 828 aa26.91■■□□□ 1.9
VPS28-205ENST00000526204 TBC1D32Q96NH3 1257 aa26.91■■□□□ 1.9
VPS28-205ENST00000526204 EMILIN1Q9Y6C2 1016 aa26.91■■□□□ 1.9
VPS28-205ENST00000526204 PHACTR3Q96KR7 559 aa26.9■■□□□ 1.9
VPS28-205ENST00000526204 ZNF692Q9BU19 519 aaPredicted RBP26.9■■□□□ 1.9
VPS28-205ENST00000526204 KNDC1Q76NI1 1749 aa26.9■■□□□ 1.9
VPS28-205ENST00000526204 HMOX1P09601 288 aa26.89■■□□□ 1.9
VPS28-205ENST00000526204 GNAI1P63096 354 aa26.89■■□□□ 1.9
VPS28-205ENST00000526204 CHMP4BQ9H444 224 aaKnown RBP26.89■■□□□ 1.9
VPS28-205ENST00000526204 IFT57Q9NWB7 429 aa26.89■■□□□ 1.9
VPS28-205ENST00000526204 MAP2P11137 1827 aaKnown RBP26.89■■□□□ 1.89
VPS28-205ENST00000526204 LMOD3Q0VAK6 560 aa26.89■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms