RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 PPP2R1AP30153 589 aa12.59□□□□□ -0.39
SDCBP-212ENST00000523483 NLRP13Q86W25 1043 aa12.59□□□□□ -0.39
SDCBP-212ENST00000523483 RGPD8O14715 1765 aaPredicted RBP12.59□□□□□ -0.39
SDCBP-212ENST00000523483 ADGRB2O60241 1585 aa12.58□□□□□ -0.39
SDCBP-212ENST00000523483 KRT28Q7Z3Y7 464 aa12.58□□□□□ -0.4
SDCBP-212ENST00000523483 CCER2I3L3R5 266 aa12.58□□□□□ -0.4
SDCBP-212ENST00000523483 C1orf167Q5SNV9 1468 aa12.58□□□□□ -0.4
SDCBP-212ENST00000523483 CDC42BPGQ6DT37 1551 aa12.58□□□□□ -0.4
SDCBP-212ENST00000523483 ANKARQ7Z5J8 1434 aa12.58□□□□□ -0.4
SDCBP-212ENST00000523483 RRS1Q15050 365 aaKnown RBP12.58□□□□□ -0.4
SDCBP-212ENST00000523483 PARD3Q8TEW0 1356 aa12.57□□□□□ -0.4
SDCBP-212ENST00000523483 MTHFSP49914 203 aa12.57□□□□□ -0.4
SDCBP-212ENST00000523483 USP6P35125 1406 aa12.57□□□□□ -0.4
SDCBP-212ENST00000523483 CPSF1Q10570 1443 aaKnown RBP12.57□□□□□ -0.4
SDCBP-212ENST00000523483 EDC4Q6P2E9 1401 aaKnown RBP12.57□□□□□ -0.4
SDCBP-212ENST00000523483 BRINP3Q76B58 766 aa12.56□□□□□ -0.4
SDCBP-212ENST00000523483 UBAP1LF5GYI3 381 aa12.56□□□□□ -0.4
SDCBP-212ENST00000523483 MST1RQ04912 1400 aa12.56□□□□□ -0.4
SDCBP-212ENST00000523483 USP32Q8NFA0 1604 aa12.56□□□□□ -0.4
SDCBP-212ENST00000523483 SALL2Q9Y467 1007 aaPredicted RBP12.55□□□□□ -0.4
SDCBP-212ENST00000523483 HAP1P54257 671 aaPredicted RBP12.55□□□□□ -0.4
SDCBP-212ENST00000523483 FMN2Q9NZ56 1722 aa12.54□□□□□ -0.4
SDCBP-212ENST00000523483 EMILIN1Q9Y6C2 1016 aa12.54□□□□□ -0.4
SDCBP-212ENST00000523483 NPHP3Q7Z494 1330 aa12.54□□□□□ -0.4
SDCBP-212ENST00000523483 WDR43Q15061 677 aaKnown RBP eCLIP12.54□□□□□ -0.4
SDCBP-212ENST00000523483 CABLES1Q8TDN4 633 aa12.53□□□□□ -0.4
SDCBP-212ENST00000523483 POLR3AO14802 1390 aaPredicted RBP12.53□□□□□ -0.4
SDCBP-212ENST00000523483 U2SURPO15042 1029 aaKnown RBP12.53□□□□□ -0.4
SDCBP-212ENST00000523483 HNRNPUQ00839 825 aaKnown RBP eCLIP12.53□□□□□ -0.4
SDCBP-212ENST00000523483 CFAP53Q96M91 514 aa12.52□□□□□ -0.4
SDCBP-212ENST00000523483 NCOA3Q9Y6Q9 1424 aa12.52□□□□□ -0.4
SDCBP-212ENST00000523483 DCCP43146 1447 aa12.52□□□□□ -0.41
SDCBP-212ENST00000523483 TOM1O60784 492 aa12.51□□□□□ -0.41
SDCBP-212ENST00000523483 TTC21AQ8NDW8 1320 aa12.51□□□□□ -0.41
SDCBP-212ENST00000523483 LTV1Q96GA3 475 aaPredicted RBP12.51□□□□□ -0.41
SDCBP-212ENST00000523483 NSD2O96028 1365 aa12.51□□□□□ -0.41
SDCBP-212ENST00000523483 ITSN1Q15811 1721 aa12.51□□□□□ -0.41
SDCBP-212ENST00000523483 NPC1L1Q9UHC9 1359 aa12.51□□□□□ -0.41
SDCBP-212ENST00000523483 AMPHP49418 695 aa12.5□□□□□ -0.41
SDCBP-212ENST00000523483 ZC3H6P61129 1189 aaKnown RBP12.5□□□□□ -0.41
SDCBP-212ENST00000523483 BRD4O60885 1362 aaPredicted RBP12.5□□□□□ -0.41
SDCBP-212ENST00000523483 POLKQ9UBT6 870 aa12.49□□□□□ -0.41
SDCBP-212ENST00000523483 CCDC146Q8IYE0 955 aa12.49□□□□□ -0.41
SDCBP-212ENST00000523483 U2AF1L5P0DN76 240 aaPredicted RBP12.48□□□□□ -0.41
SDCBP-212ENST00000523483 U2AF1Q01081 240 aaKnown RBP eCLIP12.48□□□□□ -0.41
SDCBP-212ENST00000523483 TOPAZ1Q8N9V7 1692 aa12.48□□□□□ -0.41
SDCBP-212ENST00000523483 PNISRQ8TF01 805 aaKnown RBP12.48□□□□□ -0.41
SDCBP-212ENST00000523483 XIRP1Q702N8 1843 aaKnown RBP12.48□□□□□ -0.41
SDCBP-212ENST00000523483 ADAMTS8Q9UP79 889 aa12.47□□□□□ -0.41
SDCBP-212ENST00000523483 LTBP4Q8N2S1 1624 aa12.47□□□□□ -0.41
SDCBP-212ENST00000523483 CERKQ8TCT0 537 aa12.47□□□□□ -0.41
SDCBP-212ENST00000523483 HSP90AB2PQ58FF8 381 aa12.46□□□□□ -0.41
SDCBP-212ENST00000523483 MAP3K19Q56UN5 1328 aa12.46□□□□□ -0.42
SDCBP-212ENST00000523483 GCP02774 474 aa12.46□□□□□ -0.42
SDCBP-212ENST00000523483 NEUROD2Q15784 382 aa12.46□□□□□ -0.42
SDCBP-212ENST00000523483 DIAPH1O60610 1272 aaKnown RBP12.45□□□□□ -0.42
SDCBP-212ENST00000523483 NUDCQ9Y266 331 aa12.45□□□□□ -0.42
SDCBP-212ENST00000523483 SSH2Q76I76 1423 aa12.45□□□□□ -0.42
SDCBP-212ENST00000523483 MON2Q7Z3U7 1717 aa12.45□□□□□ -0.42
SDCBP-212ENST00000523483 HMOX1P09601 288 aa12.45□□□□□ -0.42
SDCBP-212ENST00000523483 CHRNA2Q15822 529 aa12.44□□□□□ -0.42
SDCBP-212ENST00000523483 AKAP12Q02952 1782 aa12.44□□□□□ -0.42
SDCBP-212ENST00000523483 NUTM2BA6NNL0 878 aaPredicted RBP12.44□□□□□ -0.42
SDCBP-212ENST00000523483 NUTM2EB1AL46 878 aaPredicted RBP12.44□□□□□ -0.42
SDCBP-212ENST00000523483 NUTM2AQ8IVF1 878 aaPredicted RBP12.44□□□□□ -0.42
SDCBP-212ENST00000523483 OVOS2A0A0J9YW53 1432 aa12.43□□□□□ -0.42
SDCBP-212ENST00000523483 OVOS2Q6IE36 1432 aa12.43□□□□□ -0.42
SDCBP-212ENST00000523483 SPATA31A3Q5VYP0 1347 aa12.43□□□□□ -0.42
SDCBP-212ENST00000523483 KIF20BQ96Q89 1820 aa12.43□□□□□ -0.42
SDCBP-212ENST00000523483 KCNH5Q8NCM2 988 aa12.43□□□□□ -0.42
SDCBP-212ENST00000523483 RRP7AQ9Y3A4 280 aaKnown RBP12.41□□□□□ -0.42
SDCBP-212ENST00000523483 LRRC59Q96AG4 307 aaKnown RBP12.41□□□□□ -0.42
SDCBP-212ENST00000523483 PRDM11Q9NQV5 511 aa12.41□□□□□ -0.42
SDCBP-212ENST00000523483 ADAMTS2O95450 1211 aa12.41□□□□□ -0.42
SDCBP-212ENST00000523483 TNS3Q68CZ2 1445 aa12.41□□□□□ -0.42
SDCBP-212ENST00000523483 SOS2Q07890 1332 aaPredicted RBP12.41□□□□□ -0.42
SDCBP-212ENST00000523483 CSB-PGBD3P0DP91 1061 aa12.4□□□□□ -0.42
SDCBP-212ENST00000523483 PIK3C2AO00443 1686 aa12.4□□□□□ -0.42
SDCBP-212ENST00000523483 KIF1AQ12756 1690 aa12.4□□□□□ -0.42
SDCBP-212ENST00000523483 CENPBP07199 599 aaPredicted RBP12.4□□□□□ -0.42
SDCBP-212ENST00000523483 USHBP1Q8N6Y0 703 aa12.4□□□□□ -0.42
SDCBP-212ENST00000523483 USP31Q70CQ4 1352 aa12.39□□□□□ -0.43
SDCBP-212ENST00000523483 NRKQ7Z2Y5 1582 aa12.39□□□□□ -0.43
SDCBP-212ENST00000523483 NEFMP07197 916 aa12.39□□□□□ -0.43
SDCBP-212ENST00000523483 ARHGEF10O15013 1369 aa12.39□□□□□ -0.43
SDCBP-212ENST00000523483 APAF1O14727 1248 aa12.39□□□□□ -0.43
SDCBP-212ENST00000523483 HOXC9P31274 260 aa12.39□□□□□ -0.43
SDCBP-212ENST00000523483 EIF4A2Q14240 407 aaKnown RBP12.39□□□□□ -0.43
SDCBP-212ENST00000523483 SULT6B1Q6IMI4 303 aa12.38□□□□□ -0.43
SDCBP-212ENST00000523483 SBNO1A3KN83 1393 aa12.38□□□□□ -0.43
SDCBP-212ENST00000523483 PXDNQ92626 1479 aa12.38□□□□□ -0.43
SDCBP-212ENST00000523483 MAPK8IP3Q9UPT6 1336 aa12.38□□□□□ -0.43
SDCBP-212ENST00000523483 AATKQ6ZMQ8 1374 aa12.38□□□□□ -0.43
SDCBP-212ENST00000523483 ROBO1Q9Y6N7 1651 aa12.38□□□□□ -0.43
SDCBP-212ENST00000523483 AEBP1Q8IUX7 1158 aa12.38□□□□□ -0.43
SDCBP-212ENST00000523483 STRN4Q9NRL3 753 aa12.38□□□□□ -0.43
SDCBP-212ENST00000523483 FLT4P35916 1363 aa12.38□□□□□ -0.43
SDCBP-212ENST00000523483 MAP2P11137 1827 aaKnown RBP12.37□□□□□ -0.43
SDCBP-212ENST00000523483 KIAA0232Q92628 1395 aa12.37□□□□□ -0.43
SDCBP-212ENST00000523483 USP35Q9P2H5 1018 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms