RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 PHLPP1O60346 1717 aa9.89□□□□□ -0.83
NUP54-204ENST00000506098 NSD3Q9BZ95 1437 aa9.89□□□□□ -0.83
NUP54-204ENST00000506098 AHDC1Q5TGY3 1603 aaPredicted RBP9.89□□□□□ -0.83
NUP54-204ENST00000506098 ESCO1Q5FWF5 840 aa9.88□□□□□ -0.83
NUP54-204ENST00000506098 PMFBP1Q8TBY8 1022 aa9.88□□□□□ -0.83
NUP54-204ENST00000506098 ABCA3Q99758 1704 aa9.87□□□□□ -0.83
NUP54-204ENST00000506098 PXDNQ92626 1479 aa9.87□□□□□ -0.83
NUP54-204ENST00000506098 AMER1Q5JTC6 1135 aaPredicted RBP9.87□□□□□ -0.83
NUP54-204ENST00000506098 KNSTRNQ9Y448 316 aa9.87□□□□□ -0.83
NUP54-204ENST00000506098 NSD2O96028 1365 aa9.87□□□□□ -0.83
NUP54-204ENST00000506098 TTC21AQ8NDW8 1320 aa9.86□□□□□ -0.83
NUP54-204ENST00000506098 RGPD5Q99666 1765 aa9.86□□□□□ -0.83
NUP54-204ENST00000506098 PRKCSHP14314 528 aaPredicted RBP9.86□□□□□ -0.83
NUP54-204ENST00000506098 BRINP3Q76B58 766 aa9.86□□□□□ -0.83
NUP54-204ENST00000506098 NGDNQ8NEJ9 315 aaKnown RBP9.86□□□□□ -0.83
NUP54-204ENST00000506098 CERKQ8TCT0 537 aa9.86□□□□□ -0.83
NUP54-204ENST00000506098 DAXXQ9UER7 740 aaPredicted RBP9.86□□□□□ -0.83
NUP54-204ENST00000506098 PHRF1Q9P1Y6 1649 aaKnown RBP9.85□□□□□ -0.83
NUP54-204ENST00000506098 CGNL1Q0VF96 1302 aa9.85□□□□□ -0.83
NUP54-204ENST00000506098 PARD3Q8TEW0 1356 aa9.85□□□□□ -0.83
NUP54-204ENST00000506098 NPHP3Q7Z494 1330 aa9.84□□□□□ -0.83
NUP54-204ENST00000506098 TTC21BQ7Z4L5 1316 aa9.84□□□□□ -0.83
NUP54-204ENST00000506098 FYB1O15117 783 aa9.84□□□□□ -0.83
NUP54-204ENST00000506098 TOM1O60784 492 aa9.84□□□□□ -0.83
NUP54-204ENST00000506098 PRKRIP1Q9H875 184 aaPredicted RBP9.84□□□□□ -0.83
NUP54-204ENST00000506098 COL16A1Q07092 1604 aaPredicted RBP9.84□□□□□ -0.83
NUP54-204ENST00000506098 COL22A1Q8NFW1 1626 aaPredicted RBP9.84□□□□□ -0.83
NUP54-204ENST00000506098 SBNO1A3KN83 1393 aa9.84□□□□□ -0.83
NUP54-204ENST00000506098 USP31Q70CQ4 1352 aa9.84□□□□□ -0.83
NUP54-204ENST00000506098 OVOS2A0A0J9YW53 1432 aa9.83□□□□□ -0.84
NUP54-204ENST00000506098 OVOS2Q6IE36 1432 aa9.83□□□□□ -0.84
NUP54-204ENST00000506098 FOXO3O43524 673 aa9.83□□□□□ -0.84
NUP54-204ENST00000506098 PSME1Q06323 249 aa9.83□□□□□ -0.84
NUP54-204ENST00000506098 KRT28Q7Z3Y7 464 aa9.83□□□□□ -0.84
NUP54-204ENST00000506098 MED1Q15648 1581 aaPredicted RBP9.83□□□□□ -0.84
NUP54-204ENST00000506098 SHPRHQ149N8 1683 aa9.83□□□□□ -0.84
NUP54-204ENST00000506098 SOS2Q07890 1332 aaPredicted RBP9.82□□□□□ -0.84
NUP54-204ENST00000506098 ANP32CO43423 234 aa9.82□□□□□ -0.84
NUP54-204ENST00000506098 RALBP1Q15311 655 aa9.82□□□□□ -0.84
NUP54-204ENST00000506098 SLIT3O75094 1523 aa9.82□□□□□ -0.84
NUP54-204ENST00000506098 COL18A1P39060 1754 aa9.81□□□□□ -0.84
NUP54-204ENST00000506098 TNS3Q68CZ2 1445 aa9.81□□□□□ -0.84
NUP54-204ENST00000506098 SCAF1Q9H7N4 1312 aaKnown RBP9.81□□□□□ -0.84
NUP54-204ENST00000506098 CC2D1BQ5T0F9 858 aaKnown RBP9.8□□□□□ -0.84
NUP54-204ENST00000506098 NME9Q86XW9 330 aa9.8□□□□□ -0.84
NUP54-204ENST00000506098 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.8□□□□□ -0.84
NUP54-204ENST00000506098 RGPD2P0DJD1 1756 aa9.8□□□□□ -0.84
NUP54-204ENST00000506098 SPATA31A3Q5VYP0 1347 aa9.8□□□□□ -0.84
NUP54-204ENST00000506098 PEAK1Q9H792 1746 aa9.79□□□□□ -0.84
NUP54-204ENST00000506098 NFAT5O94916 1531 aa9.79□□□□□ -0.84
NUP54-204ENST00000506098 UBAP1LF5GYI3 381 aa9.79□□□□□ -0.84
NUP54-204ENST00000506098 MIER1Q8N108 512 aa9.79□□□□□ -0.84
NUP54-204ENST00000506098 DDX17Q92841 729 aaKnown RBP9.79□□□□□ -0.84
NUP54-204ENST00000506098 GGNBP2Q9H3C7 697 aa9.79□□□□□ -0.84
NUP54-204ENST00000506098 AATKQ6ZMQ8 1374 aa9.78□□□□□ -0.84
NUP54-204ENST00000506098 MSH5O43196 834 aa9.78□□□□□ -0.84
NUP54-204ENST00000506098 MORC1Q86VD1 984 aa9.78□□□□□ -0.84
NUP54-204ENST00000506098 ABTB2Q8N961 1025 aa9.78□□□□□ -0.84
NUP54-204ENST00000506098 COG3Q96JB2 828 aa9.78□□□□□ -0.84
NUP54-204ENST00000506098 ZRANB1Q9UGI0 708 aa9.78□□□□□ -0.84
NUP54-204ENST00000506098 MYBBP1AQ9BQG0 1328 aaKnown RBP9.78□□□□□ -0.84
NUP54-204ENST00000506098 ARHGEF10O15013 1369 aa9.77□□□□□ -0.84
NUP54-204ENST00000506098 SMG6Q86US8 1419 aaKnown RBP9.77□□□□□ -0.85
NUP54-204ENST00000506098 CCER2I3L3R5 266 aa9.77□□□□□ -0.85
NUP54-204ENST00000506098 PAK3O75914 559 aaPredicted RBP9.77□□□□□ -0.85
NUP54-204ENST00000506098 NLRP6P59044 892 aa9.77□□□□□ -0.85
NUP54-204ENST00000506098 XPCQ01831 940 aaPredicted RBP9.77□□□□□ -0.85
NUP54-204ENST00000506098 NLRP13Q86W25 1043 aa9.77□□□□□ -0.85
NUP54-204ENST00000506098 USP19O94966 1318 aa9.77□□□□□ -0.85
NUP54-204ENST00000506098 VIRMAQ69YN4 1812 aaKnown RBP9.77□□□□□ -0.85
NUP54-204ENST00000506098 FAM208AQ9UK61 1670 aaKnown RBP9.77□□□□□ -0.85
NUP54-204ENST00000506098 PPP2R1AP30153 589 aa9.76□□□□□ -0.85
NUP54-204ENST00000506098 ABCC6O95255 1503 aa9.76□□□□□ -0.85
NUP54-204ENST00000506098 RGPD1P0DJD0 1748 aa9.76□□□□□ -0.85
NUP54-204ENST00000506098 LRRC59Q96AG4 307 aaKnown RBP9.75□□□□□ -0.85
NUP54-204ENST00000506098 INSRP06213 1382 aa9.75□□□□□ -0.85
NUP54-204ENST00000506098 LMO7Q8WWI1 1683 aa9.74□□□□□ -0.85
NUP54-204ENST00000506098 DLG5Q8TDM6 1919 aa9.74□□□□□ -0.85
NUP54-204ENST00000506098 CDK12Q9NYV4 1490 aaPredicted RBP9.74□□□□□ -0.85
NUP54-204ENST00000506098 NWD2Q9ULI1 1742 aa9.74□□□□□ -0.85
NUP54-204ENST00000506098 PIP4K2BP78356 416 aa9.74□□□□□ -0.85
NUP54-204ENST00000506098 KCNH5Q8NCM2 988 aa9.74□□□□□ -0.85
NUP54-204ENST00000506098 KIF24Q5T7B8 1368 aa9.74□□□□□ -0.85
NUP54-204ENST00000506098 PLCH1Q4KWH8 1693 aa9.74□□□□□ -0.85
NUP54-204ENST00000506098 COL3A1P02461 1466 aaPredicted RBP9.73□□□□□ -0.85
NUP54-204ENST00000506098 COL14A1Q05707 1796 aaKnown RBP9.73□□□□□ -0.85
NUP54-204ENST00000506098 CNGB1Q14028 1251 aaPredicted RBP9.73□□□□□ -0.85
NUP54-204ENST00000506098 POLKQ9UBT6 870 aa9.73□□□□□ -0.85
NUP54-204ENST00000506098 CAMTA1Q9Y6Y1 1673 aa9.73□□□□□ -0.85
NUP54-204ENST00000506098 PNPLA6Q8IY17 1366 aa9.73□□□□□ -0.85
NUP54-204ENST00000506098 GCP02774 474 aa9.72□□□□□ -0.85
NUP54-204ENST00000506098 NUTM2GQ5VZR2 741 aa9.72□□□□□ -0.85
NUP54-204ENST00000506098 FBLN1P23142 703 aa9.71□□□□□ -0.86
NUP54-204ENST00000506098 TNNT2P45379 298 aaPredicted RBP9.71□□□□□ -0.86
NUP54-204ENST00000506098 MTHFSP49914 203 aa9.71□□□□□ -0.86
NUP54-204ENST00000506098 CCDC184Q52MB2 194 aa9.71□□□□□ -0.86
NUP54-204ENST00000506098 LMOD2Q6P5Q4 547 aa9.71□□□□□ -0.86
NUP54-204ENST00000506098 RTL1A6NKG5 1358 aa9.71□□□□□ -0.86
NUP54-204ENST00000506098 CPDO75976 1380 aa9.71□□□□□ -0.86
NUP54-204ENST00000506098 NRAPQ86VF7 1730 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms