RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CD163L1Q9NR16 1453 aa21.26■□□□□ 0.99
CCDC88B-210ENST00000494566 CLTCQ00610 1675 aaKnown RBP21.25■□□□□ 0.99
CCDC88B-210ENST00000494566 NSD2O96028 1365 aa21.25■□□□□ 0.99
CCDC88B-210ENST00000494566 WDR63Q8IWG1 891 aa21.24■□□□□ 0.99
CCDC88B-210ENST00000494566 GSE1Q14687 1217 aa21.24■□□□□ 0.99
CCDC88B-210ENST00000494566 PDE3AQ14432 1141 aa21.23■□□□□ 0.99
CCDC88B-210ENST00000494566 ATAD2Q6PL18 1390 aa21.23■□□□□ 0.99
CCDC88B-210ENST00000494566 NCKAP5LQ9HCH0 1330 aa21.23■□□□□ 0.99
CCDC88B-210ENST00000494566 HDGFL2Q7Z4V5 671 aaPredicted RBP21.22■□□□□ 0.99
CCDC88B-210ENST00000494566 PLEKHF1Q96S99 279 aa21.21■□□□□ 0.99
CCDC88B-210ENST00000494566 TMPOP42166 694 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-210ENST00000494566 PCDHB15Q9Y5E8 787 aa21.2■□□□□ 0.98
CCDC88B-210ENST00000494566 MAPK8IP3Q9UPT6 1336 aa21.19■□□□□ 0.98
CCDC88B-210ENST00000494566 EXOSC9Q06265 439 aaKnown RBP21.19■□□□□ 0.98
CCDC88B-210ENST00000494566 TXNDC2Q86VQ3 553 aa21.19■□□□□ 0.98
CCDC88B-210ENST00000494566 TRIM35Q9UPQ4 493 aa21.19■□□□□ 0.98
CCDC88B-210ENST00000494566 ZRANB1Q9UGI0 708 aa21.19■□□□□ 0.98
CCDC88B-210ENST00000494566 A2ML1A8K2U0 1454 aa21.19■□□□□ 0.98
CCDC88B-210ENST00000494566 RIMS2Q9UQ26 1411 aa21.19■□□□□ 0.98
CCDC88B-210ENST00000494566 CCDC27Q2M243 656 aa21.18■□□□□ 0.98
CCDC88B-210ENST00000494566 MYH16Q9H6N6 1097 aa21.18■□□□□ 0.98
CCDC88B-210ENST00000494566 NLRP1Q9C000 1473 aa21.18■□□□□ 0.98
CCDC88B-210ENST00000494566 ARHGEF40Q8TER5 1519 aa21.18■□□□□ 0.98
CCDC88B-210ENST00000494566 DIAPH1O60610 1272 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-210ENST00000494566 RIPK4P57078 832 aa21.17■□□□□ 0.98
CCDC88B-210ENST00000494566 COL3A1P02461 1466 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-210ENST00000494566 NINLQ9Y2I6 1382 aa21.16■□□□□ 0.98
CCDC88B-210ENST00000494566 USP35Q9P2H5 1018 aa21.16■□□□□ 0.98
CCDC88B-210ENST00000494566 HMOX1P09601 288 aa21.15■□□□□ 0.98
CCDC88B-210ENST00000494566 PLPPR3Q6T4P5 718 aa21.15■□□□□ 0.98
CCDC88B-210ENST00000494566 EIF5BO60841 1220 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-210ENST00000494566 SMC4Q9NTJ3 1288 aa21.14■□□□□ 0.97
CCDC88B-210ENST00000494566 METP08581 1390 aa21.14■□□□□ 0.97
CCDC88B-210ENST00000494566 ESF1Q9H501 851 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-210ENST00000494566 NME9Q86XW9 330 aa21.13■□□□□ 0.97
CCDC88B-210ENST00000494566 EMILIN1Q9Y6C2 1016 aa21.13■□□□□ 0.97
CCDC88B-210ENST00000494566 ADGRB2O60241 1585 aa21.13■□□□□ 0.97
CCDC88B-210ENST00000494566 NUTM2FA1L443 756 aa21.12■□□□□ 0.97
CCDC88B-210ENST00000494566 POLKQ9UBT6 870 aa21.12■□□□□ 0.97
CCDC88B-210ENST00000494566 THUMPD2Q9BTF0 503 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-210ENST00000494566 FTSJ3Q8IY81 847 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-210ENST00000494566 SSH1Q8WYL5 1049 aa21.11■□□□□ 0.97
CCDC88B-210ENST00000494566 PRKAR2BP31323 418 aa21.11■□□□□ 0.97
CCDC88B-210ENST00000494566 ZKSCAN2Q63HK3 967 aa21.08■□□□□ 0.97
CCDC88B-210ENST00000494566 PHACTR3Q96KR7 559 aa21.08■□□□□ 0.97
CCDC88B-210ENST00000494566 ANKRD26Q9UPS8 1709 aa21.08■□□□□ 0.97
CCDC88B-210ENST00000494566 RRS1Q15050 365 aaKnown RBP21.08■□□□□ 0.97
CCDC88B-210ENST00000494566 ZMYM3Q14202 1370 aa21.08■□□□□ 0.96
CCDC88B-210ENST00000494566 SPATA31D1Q6ZQQ2 1576 aa21.08■□□□□ 0.96
CCDC88B-210ENST00000494566 DZIP1LQ8IYY4 767 aaKnown RBP21.08■□□□□ 0.96
CCDC88B-210ENST00000494566 WASLO00401 505 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-210ENST00000494566 TRIM27P14373 513 aa21.07■□□□□ 0.96
CCDC88B-210ENST00000494566 KIF20BQ96Q89 1820 aa21.07■□□□□ 0.96
CCDC88B-210ENST00000494566 MVPQ14764 893 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-210ENST00000494566 PPIP5K1Q6PFW1 1433 aa21.06■□□□□ 0.96
CCDC88B-210ENST00000494566 AGLP35573 1532 aa21.06■□□□□ 0.96
CCDC88B-210ENST00000494566 NOB1Q9ULX3 412 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-210ENST00000494566 PDZRN3Q9UPQ7 1066 aa21.06■□□□□ 0.96
CCDC88B-210ENST00000494566 ITPRIPQ8IWB1 547 aa21.06■□□□□ 0.96
CCDC88B-210ENST00000494566 GZF1Q9H116 711 aaPredicted RBP21.06■□□□□ 0.96
CCDC88B-210ENST00000494566 SETD1AO15047 1707 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-210ENST00000494566 NUDT16Q96DE0 195 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-210ENST00000494566 MAP2P11137 1827 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-210ENST00000494566 RSPH6AQ9H0K4 717 aa21.05■□□□□ 0.96
CCDC88B-210ENST00000494566 LRRC7Q96NW7 1537 aa21.04■□□□□ 0.96
CCDC88B-210ENST00000494566 PNPLA6Q8IY17 1366 aa21.04■□□□□ 0.96
CCDC88B-210ENST00000494566 PMFBP1Q8TBY8 1022 aa21.04■□□□□ 0.96
CCDC88B-210ENST00000494566 USP19O94966 1318 aa21.04■□□□□ 0.96
CCDC88B-210ENST00000494566 ELL2O00472 640 aaPredicted RBP21.04■□□□□ 0.96
CCDC88B-210ENST00000494566 PPP6R1Q9UPN7 881 aa21.04■□□□□ 0.96
CCDC88B-210ENST00000494566 MED14O60244 1454 aa21.04■□□□□ 0.96
CCDC88B-210ENST00000494566 NRXN3Q9Y4C0 1643 aa21.03■□□□□ 0.96
CCDC88B-210ENST00000494566 CEBPAP49715 358 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-210ENST00000494566 REREQ9P2R6 1566 aa21.01■□□□□ 0.95
CCDC88B-210ENST00000494566 SOX12O15370 315 aa21.01■□□□□ 0.95
CCDC88B-210ENST00000494566 FCHSD2O94868 740 aa21.01■□□□□ 0.95
CCDC88B-210ENST00000494566 TMEM57Q8N5G2 664 aa21.01■□□□□ 0.95
CCDC88B-210ENST00000494566 ATF7IPQ6VMQ6 1270 aa21■□□□□ 0.95
CCDC88B-210ENST00000494566 PRR36Q9H6K5 1346 aa20.99■□□□□ 0.95
CCDC88B-210ENST00000494566 RWDD1Q9H446 243 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-210ENST00000494566 ATP7BP35670 1465 aa20.99■□□□□ 0.95
CCDC88B-210ENST00000494566 CPS1P31327 1500 aa20.98■□□□□ 0.95
CCDC88B-210ENST00000494566 DLC1Q96QB1 1528 aa20.98■□□□□ 0.95
CCDC88B-210ENST00000494566 FAM83GA6ND36 823 aa20.98■□□□□ 0.95
CCDC88B-210ENST00000494566 TSPYL6Q8N831 410 aa20.98■□□□□ 0.95
CCDC88B-210ENST00000494566 KIF13AQ9H1H9 1805 aa20.97■□□□□ 0.95
CCDC88B-210ENST00000494566 DCTN1Q14203 1278 aa20.97■□□□□ 0.95
CCDC88B-210ENST00000494566 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.97■□□□□ 0.95
CCDC88B-210ENST00000494566 MFAP1P55081 439 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-210ENST00000494566 NCBP3Q53F19 620 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-210ENST00000494566 COG3Q96JB2 828 aa20.97■□□□□ 0.95
CCDC88B-210ENST00000494566 SLC26A8Q96RN1 970 aa20.97■□□□□ 0.95
CCDC88B-210ENST00000494566 CCDC61Q9Y6R9 512 aa20.97■□□□□ 0.95
CCDC88B-210ENST00000494566 FAM135BQ49AJ0 1406 aa20.96■□□□□ 0.95
CCDC88B-210ENST00000494566 IL13P35225 146 aa20.96■□□□□ 0.95
CCDC88B-210ENST00000494566 CPSF1Q10570 1443 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-210ENST00000494566 TNRQ92752 1358 aa20.96■□□□□ 0.95
CCDC88B-210ENST00000494566 ROBO2Q9HCK4 1378 aa20.95■□□□□ 0.94
CCDC88B-210ENST00000494566 EDC4Q6P2E9 1401 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-210ENST00000494566 PRKCSHP14314 528 aaPredicted RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms