RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 RALGAPBQ86X10 1494 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 GOLGA6L6A8MZA4 724 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 MAP7D2Q96T17 732 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 PRAG1Q86YV5 1406 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 RAPGEF4Q8WZA2 1011 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 DENND4BO75064 1496 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 ATF3P18847 181 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 TESK2Q96S53 571 aa19.92■□□□□ 0.78
CCDC88B-209ENST00000494080 NME9Q86XW9 330 aa19.91■□□□□ 0.78
CCDC88B-209ENST00000494080 MAGI3Q5TCQ9 1506 aa19.91■□□□□ 0.78
CCDC88B-209ENST00000494080 NEXNQ0ZGT2 675 aa19.91■□□□□ 0.78
CCDC88B-209ENST00000494080 PZPP20742 1482 aa19.91■□□□□ 0.78
CCDC88B-209ENST00000494080 NRDCO43847 1150 aa19.9■□□□□ 0.78
CCDC88B-209ENST00000494080 PHF14O94880 888 aa19.9■□□□□ 0.78
CCDC88B-209ENST00000494080 AIMP1Q12904 312 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-209ENST00000494080 FCHSD2O94868 740 aa19.9■□□□□ 0.78
CCDC88B-209ENST00000494080 TULP1O00294 542 aaPredicted RBP19.89■□□□□ 0.77
CCDC88B-209ENST00000494080 PROSER2Q86WR7 435 aaPredicted RBP19.89■□□□□ 0.77
CCDC88B-209ENST00000494080 GAS2L2Q8NHY3 880 aa19.89■□□□□ 0.77
CCDC88B-209ENST00000494080 FBLN1P23142 703 aa19.89■□□□□ 0.77
CCDC88B-209ENST00000494080 DUSP27Q5VZP5 1158 aa19.89■□□□□ 0.77
CCDC88B-209ENST00000494080 SLC4A2P04920 1241 aa19.88■□□□□ 0.77
CCDC88B-209ENST00000494080 MVPQ14764 893 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-209ENST00000494080 EMILIN1Q9Y6C2 1016 aa19.88■□□□□ 0.77
CCDC88B-209ENST00000494080 CAVIN1Q6NZI2 390 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-209ENST00000494080 RNF214Q8ND24 703 aa19.88■□□□□ 0.77
CCDC88B-209ENST00000494080 DUOX2Q9NRD8 1548 aa19.88■□□□□ 0.77
CCDC88B-209ENST00000494080 CCDC173Q0VFZ6 552 aa19.87■□□□□ 0.77
CCDC88B-209ENST00000494080 DCTN1Q14203 1278 aa19.87■□□□□ 0.77
CCDC88B-209ENST00000494080 ANO2Q9NQ90 1003 aa19.87■□□□□ 0.77
CCDC88B-209ENST00000494080 SAMD9Q5K651 1589 aa19.87■□□□□ 0.77
CCDC88B-209ENST00000494080 GPRASP1Q5JY77 1395 aa19.87■□□□□ 0.77
CCDC88B-209ENST00000494080 ISY1Q9ULR0 285 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-209ENST00000494080 REC8O95072 547 aa19.86■□□□□ 0.77
CCDC88B-209ENST00000494080 NUCB2P80303 420 aa19.86■□□□□ 0.77
CCDC88B-209ENST00000494080 XPCQ01831 940 aaPredicted RBP19.86■□□□□ 0.77
CCDC88B-209ENST00000494080 RBM33Q96EV2 1170 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-209ENST00000494080 RARSP54136 660 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-209ENST00000494080 DIAPH3Q9NSV4 1193 aa19.85■□□□□ 0.77
CCDC88B-209ENST00000494080 NFE2L2Q16236 605 aa19.85■□□□□ 0.77
CCDC88B-209ENST00000494080 PBRM1Q86U86 1689 aa19.85■□□□□ 0.77
CCDC88B-209ENST00000494080 UBTFL1P0CB47 393 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-209ENST00000494080 HSP90B1P14625 803 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-209ENST00000494080 SSH1Q8WYL5 1049 aa19.84■□□□□ 0.77
CCDC88B-209ENST00000494080 DDX58O95786 925 aaKnown RBP19.83■□□□□ 0.77
CCDC88B-209ENST00000494080 ZNF771Q7L3S4 317 aaPredicted RBP19.83■□□□□ 0.77
CCDC88B-209ENST00000494080 MTERF4Q7Z6M4 381 aaKnown RBP19.83■□□□□ 0.77
CCDC88B-209ENST00000494080 ZNF428Q96B54 188 aa19.83■□□□□ 0.77
CCDC88B-209ENST00000494080 SYTL4Q96C24 671 aaPredicted RBP19.83■□□□□ 0.76
CCDC88B-209ENST00000494080 MIS18AQ9NYP9 233 aa19.83■□□□□ 0.76
CCDC88B-209ENST00000494080 DNMT1P26358 1616 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-209ENST00000494080 IFIT2P09913 472 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-209ENST00000494080 WDR7Q9Y4E6 1490 aa19.82■□□□□ 0.76
CCDC88B-209ENST00000494080 CT47B1P0C2W7 299 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-209ENST00000494080 CCDC30Q5VVM6 783 aa19.82■□□□□ 0.76
CCDC88B-209ENST00000494080 TMEM57Q8N5G2 664 aa19.82■□□□□ 0.76
CCDC88B-209ENST00000494080 WASLO00401 505 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-209ENST00000494080 A2MP01023 1474 aa19.82■□□□□ 0.76
CCDC88B-209ENST00000494080 ANKLE2Q86XL3 938 aa19.81■□□□□ 0.76
CCDC88B-209ENST00000494080 TBC1D2Q9BYX2 928 aa19.81■□□□□ 0.76
CCDC88B-209ENST00000494080 TNNT3P45378 269 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-209ENST00000494080 INTS3Q68E01 1043 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-209ENST00000494080 MCM10Q7L590 875 aa19.81■□□□□ 0.76
CCDC88B-209ENST00000494080 HDGFL1Q5TGJ6 251 aa19.81■□□□□ 0.76
CCDC88B-209ENST00000494080 GNL2Q13823 731 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-209ENST00000494080 RIC3Q7Z5B4 369 aa19.8■□□□□ 0.76
CCDC88B-209ENST00000494080 SURF6O75683 361 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-209ENST00000494080 PER1O15534 1290 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-209ENST00000494080 G3BP1Q13283 466 aaKnown RBP eCLIP19.79■□□□□ 0.76
CCDC88B-209ENST00000494080 TARBP1Q13395 1621 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-209ENST00000494080 GTF2E1P29083 439 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-209ENST00000494080 SHANK2Q9UPX8 1470 aa19.78■□□□□ 0.76
CCDC88B-209ENST00000494080 CDC45O75419 566 aa19.78■□□□□ 0.76
CCDC88B-209ENST00000494080 GNAI3P08754 354 aa19.78■□□□□ 0.76
CCDC88B-209ENST00000494080 PANK2Q9BZ23 570 aa19.78■□□□□ 0.76
CCDC88B-209ENST00000494080 CCDC39Q9UFE4 941 aa19.78■□□□□ 0.76
CCDC88B-209ENST00000494080 AMOTL2Q9Y2J4 779 aa19.78■□□□□ 0.76
CCDC88B-209ENST00000494080 PARD3Q8TEW0 1356 aa19.78■□□□□ 0.76
CCDC88B-209ENST00000494080 XRCC6P12956 609 aaKnown RBP eCLIP19.78■□□□□ 0.766e-6■■■■■ 27.6
CCDC88B-209ENST00000494080 PLEKHO1Q53GL0 409 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-209ENST00000494080 ZNF530Q6P9A1 599 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-209ENST00000494080 ZSCAN30Q86W11 494 aa19.77■□□□□ 0.76
CCDC88B-209ENST00000494080 NKTRP30414 1462 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-209ENST00000494080 PRPF40AO75400 957 aaKnown RBP19.77■□□□□ 0.75
CCDC88B-209ENST00000494080 UQCRHLA0A096LP55 91 aa19.76■□□□□ 0.75
CCDC88B-209ENST00000494080 UQCRHP07919 91 aa19.76■□□□□ 0.75
CCDC88B-209ENST00000494080 GCC1Q96CN9 775 aa19.76■□□□□ 0.75
CCDC88B-209ENST00000494080 CARD14Q9BXL6 1004 aa19.76■□□□□ 0.75
CCDC88B-209ENST00000494080 NINLQ9Y2I6 1382 aa19.75■□□□□ 0.75
CCDC88B-209ENST00000494080 CLCN1P35523 988 aa19.75■□□□□ 0.75
CCDC88B-209ENST00000494080 MPNDQ8N594 471 aa19.75■□□□□ 0.75
CCDC88B-209ENST00000494080 CEP170Q5SW79 1584 aa19.75■□□□□ 0.75
CCDC88B-209ENST00000494080 TEX14Q8IWB6 1497 aa19.75■□□□□ 0.75
CCDC88B-209ENST00000494080 ZNF518AQ6AHZ1 1483 aa19.74■□□□□ 0.75
CCDC88B-209ENST00000494080 POGZQ7Z3K3 1410 aa19.74■□□□□ 0.75
CCDC88B-209ENST00000494080 TOMM22Q9NS69 142 aa19.74■□□□□ 0.75
CCDC88B-209ENST00000494080 FYB1O15117 783 aa19.74■□□□□ 0.75
CCDC88B-209ENST00000494080 C8orf34Q49A92 452 aa19.74■□□□□ 0.75
CCDC88B-209ENST00000494080 RUFY2Q8WXA3 655 aa19.74■□□□□ 0.75
CCDC88B-209ENST00000494080 GNAI2P04899 355 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms