RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 SEPT12Q8IYM1 358 aa12.28□□□□□ -0.44
USP39-216ENST00000490193 FOXD4L1Q9NU39 408 aa12.28□□□□□ -0.44
USP39-216ENST00000490193 PHF8Q9UPP1 1060 aa12.28□□□□□ -0.44
USP39-216ENST00000490193 ANKARQ7Z5J8 1434 aa12.28□□□□□ -0.44
USP39-216ENST00000490193 ALS2Q96Q42 1657 aa12.27□□□□□ -0.45
USP39-216ENST00000490193 DEFB132Q7Z7B7 95 aa12.27□□□□□ -0.45
USP39-216ENST00000490193 C14orf93Q9H972 538 aaKnown RBP12.27□□□□□ -0.45
USP39-216ENST00000490193 COL14A1Q05707 1796 aaKnown RBP12.26□□□□□ -0.45
USP39-216ENST00000490193 HAX1O00165 279 aa12.26□□□□□ -0.45
USP39-216ENST00000490193 SF3B2Q13435 895 aaKnown RBP12.26□□□□□ -0.45
USP39-216ENST00000490193 MPHOSPH9Q99550 1183 aa12.26□□□□□ -0.45
USP39-216ENST00000490193 DHX57Q6P158 1386 aaKnown RBP12.26□□□□□ -0.45
USP39-216ENST00000490193 RGPD1P0DJD0 1748 aa12.25□□□□□ -0.45
USP39-216ENST00000490193 CRYBG1Q9Y4K1 1723 aa12.25□□□□□ -0.45
USP39-216ENST00000490193 HAP1P54257 671 aaPredicted RBP12.25□□□□□ -0.45
USP39-216ENST00000490193 KRT27Q7Z3Y8 459 aa12.25□□□□□ -0.45
USP39-216ENST00000490193 CABLES1Q8TDN4 633 aa12.25□□□□□ -0.45
USP39-216ENST00000490193 PITPNM1O00562 1244 aa12.24□□□□□ -0.45
USP39-216ENST00000490193 ADGRB1O14514 1584 aa12.23□□□□□ -0.45
USP39-216ENST00000490193 ACIN1Q9UKV3 1341 aaKnown RBP12.23□□□□□ -0.45
USP39-216ENST00000490193 TNS1Q9HBL0 1735 aaKnown RBP12.23□□□□□ -0.45
USP39-216ENST00000490193 THSD7AQ9UPZ6 1657 aa12.22□□□□□ -0.45
USP39-216ENST00000490193 FAM83GA6ND36 823 aa12.22□□□□□ -0.45
USP39-216ENST00000490193 CFAP70Q5T0N1 1121 aa12.22□□□□□ -0.45
USP39-216ENST00000490193 PRAM1Q96QH2 718 aa12.22□□□□□ -0.45
USP39-216ENST00000490193 DISP2A7MBM2 1401 aa12.21□□□□□ -0.45
USP39-216ENST00000490193 BAG6P46379 1132 aa12.21□□□□□ -0.45
USP39-216ENST00000490193 CCDC9Q9Y3X0 531 aaKnown RBP12.21□□□□□ -0.45
USP39-216ENST00000490193 TULP4Q9NRJ4 1543 aa12.21□□□□□ -0.46
USP39-216ENST00000490193 EIF3AQ14152 1382 aaKnown RBP12.2□□□□□ -0.46
USP39-216ENST00000490193 HRCP23327 699 aa12.19□□□□□ -0.46
USP39-216ENST00000490193 LMOD2Q6P5Q4 547 aa12.19□□□□□ -0.46
USP39-216ENST00000490193 ITSN1Q15811 1721 aa12.19□□□□□ -0.46
USP39-216ENST00000490193 FAM98CQ17RN3 349 aaKnown RBP12.18□□□□□ -0.46
USP39-216ENST00000490193 PMFBP1Q8TBY8 1022 aa12.18□□□□□ -0.46
USP39-216ENST00000490193 BTG4Q9NY30 223 aa12.18□□□□□ -0.46
USP39-216ENST00000490193 GPRASP1Q5JY77 1395 aa12.18□□□□□ -0.46
USP39-216ENST00000490193 SPATA31A5Q5VU36 1347 aa12.17□□□□□ -0.46
USP39-216ENST00000490193 SPATA31A7Q8IWB4 1347 aa12.17□□□□□ -0.46
USP39-216ENST00000490193 SAFB2Q14151 953 aaKnown RBP eCLIP12.17□□□□□ -0.46
USP39-216ENST00000490193 POGKQ9P215 609 aa12.17□□□□□ -0.46
USP39-216ENST00000490193 PHRF1Q9P1Y6 1649 aaKnown RBP12.17□□□□□ -0.46
USP39-216ENST00000490193 PRR36Q9H6K5 1346 aa12.16□□□□□ -0.46
USP39-216ENST00000490193 PSDA5PKW4 1024 aaPredicted RBP12.16□□□□□ -0.46
USP39-216ENST00000490193 ARHGEF28Q8N1W1 1705 aaKnown RBP12.15□□□□□ -0.46
USP39-216ENST00000490193 A0A0G2JS52 829 aa12.15□□□□□ -0.46
USP39-216ENST00000490193 PLEKHG5O94827 1062 aa12.15□□□□□ -0.46
USP39-216ENST00000490193 MYT1Q01538 1121 aa12.15□□□□□ -0.46
USP39-216ENST00000490193 RREB1Q92766 1687 aa12.14□□□□□ -0.47
USP39-216ENST00000490193 EN1Q05925 392 aaPredicted RBP12.14□□□□□ -0.47
USP39-216ENST00000490193 ATP7BP35670 1465 aa12.14□□□□□ -0.47
USP39-216ENST00000490193 WASLO00401 505 aaPredicted RBP12.13□□□□□ -0.47
USP39-216ENST00000490193 PARD3Q8TEW0 1356 aa12.13□□□□□ -0.47
USP39-216ENST00000490193 TOPAZ1Q8N9V7 1692 aa12.13□□□□□ -0.47
USP39-216ENST00000490193 SPATA31A1Q5TZJ5 1347 aa12.12□□□□□ -0.47
USP39-216ENST00000490193 MINK1Q8N4C8 1332 aaPredicted RBP12.12□□□□□ -0.47
USP39-216ENST00000490193 STAC3Q96MF2 364 aa12.12□□□□□ -0.47
USP39-216ENST00000490193 HIRIP3Q9BW71 556 aaPredicted RBP12.12□□□□□ -0.47
USP39-216ENST00000490193 PRDM11Q9NQV5 511 aa12.12□□□□□ -0.47
USP39-216ENST00000490193 TRAK1Q9UPV9 953 aa12.12□□□□□ -0.47
USP39-216ENST00000490193 R3HDM1Q15032 1099 aaKnown RBP12.11□□□□□ -0.47
USP39-216ENST00000490193 FAM182BQ5T319 152 aa12.11□□□□□ -0.47
USP39-216ENST00000490193 NUP188Q5SRE5 1749 aa12.11□□□□□ -0.47
USP39-216ENST00000490193 LMO7Q8WWI1 1683 aa12.1□□□□□ -0.47
USP39-216ENST00000490193 KIAA0232Q92628 1395 aa12.1□□□□□ -0.47
USP39-216ENST00000490193 NGDNQ8NEJ9 315 aaKnown RBP12.1□□□□□ -0.47
USP39-216ENST00000490193 CAMKK2Q96RR4 588 aa12.1□□□□□ -0.47
USP39-216ENST00000490193 NRKQ7Z2Y5 1582 aa12.09□□□□□ -0.47
USP39-216ENST00000490193 POLR3AO14802 1390 aaPredicted RBP12.09□□□□□ -0.47
USP39-216ENST00000490193 EZH2Q15910 746 aaKnown RBP12.09□□□□□ -0.47
USP39-216ENST00000490193 FAM196AQ6ZSG2 479 aa12.09□□□□□ -0.47
USP39-216ENST00000490193 PAK3O75914 559 aaPredicted RBP12.08□□□□□ -0.48
USP39-216ENST00000490193 SSH2Q76I76 1423 aa12.08□□□□□ -0.48
USP39-216ENST00000490193 PARP4Q9UKK3 1724 aaKnown RBP12.08□□□□□ -0.48
USP39-216ENST00000490193 RAB3GAP2Q9H2M9 1393 aa12.07□□□□□ -0.48
USP39-216ENST00000490193 BARGINQ6ZT62 677 aa12.07□□□□□ -0.48
USP39-216ENST00000490193 NUDT16Q96DE0 195 aaKnown RBP12.07□□□□□ -0.48
USP39-216ENST00000490193 KIAA1210Q9ULL0 1709 aa12.07□□□□□ -0.48
USP39-216ENST00000490193 RGPD3A6NKT7 1758 aaPredicted RBP12.07□□□□□ -0.48
USP39-216ENST00000490193 RGPD4Q7Z3J3 1758 aa12.07□□□□□ -0.48
USP39-216ENST00000490193 CAMTA1Q9Y6Y1 1673 aa12.06□□□□□ -0.48
USP39-216ENST00000490193 CPDO75976 1380 aa12.06□□□□□ -0.48
USP39-216ENST00000490193 TRIM37O94972 964 aa12.06□□□□□ -0.48
USP39-216ENST00000490193 YY1P25490 414 aa12.06□□□□□ -0.48
USP39-216ENST00000490193 EVX2Q03828 476 aa12.06□□□□□ -0.48
USP39-216ENST00000490193 CHRNA2Q15822 529 aa12.06□□□□□ -0.48
USP39-216ENST00000490193 DCAF11Q8TEB1 546 aa12.06□□□□□ -0.48
USP39-216ENST00000490193 ATXN8OSP0DMR3 200 aa12.05□□□□□ -0.48
USP39-216ENST00000490193 PEAK1Q9H792 1746 aa12.04□□□□□ -0.48
USP39-216ENST00000490193 PLEKHG3A1L390 1219 aa12.04□□□□□ -0.48
USP39-216ENST00000490193 SPDYE2BA6NHP3 402 aa12.04□□□□□ -0.48
USP39-216ENST00000490193 APBA3O96018 575 aa12.04□□□□□ -0.48
USP39-216ENST00000490193 SPDYE6P0CI01 402 aa12.04□□□□□ -0.48
USP39-216ENST00000490193 ZC3H6P61129 1189 aaKnown RBP12.04□□□□□ -0.48
USP39-216ENST00000490193 SPDYE2Q495Y8 402 aa12.04□□□□□ -0.48
USP39-216ENST00000490193 STRN4Q9NRL3 753 aa12.04□□□□□ -0.48
USP39-216ENST00000490193 KDM2AQ9Y2K7 1162 aa12.04□□□□□ -0.48
USP39-216ENST00000490193 USP19O94966 1318 aa12.04□□□□□ -0.48
USP39-216ENST00000490193 SBF2Q86WG5 1849 aa12.03□□□□□ -0.48
USP39-216ENST00000490193 THRAP3Q9Y2W1 955 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms