RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 TTC21AQ8NDW8 1320 aa19.03■□□□□ 0.64
C9orf3-221ENST00000489562 PER1O15534 1290 aaPredicted RBP19.03■□□□□ 0.64
C9orf3-221ENST00000489562 PHLPP1O60346 1717 aa19.03■□□□□ 0.64
C9orf3-221ENST00000489562 CGNL1Q0VF96 1302 aa19.02■□□□□ 0.64
C9orf3-221ENST00000489562 KRT28Q7Z3Y7 464 aa19.02■□□□□ 0.64
C9orf3-221ENST00000489562 SBNO1A3KN83 1393 aa19.02■□□□□ 0.64
C9orf3-221ENST00000489562 NSD2O96028 1365 aa19.02■□□□□ 0.64
C9orf3-221ENST00000489562 NPC1L1Q9UHC9 1359 aa19.02■□□□□ 0.64
C9orf3-221ENST00000489562 USP54Q70EL1 1684 aa19.01■□□□□ 0.63
C9orf3-221ENST00000489562 ALS2Q96Q42 1657 aa19.01■□□□□ 0.63
C9orf3-221ENST00000489562 SOS2Q07890 1332 aaPredicted RBP19■□□□□ 0.63
C9orf3-221ENST00000489562 TTC21BQ7Z4L5 1316 aa19■□□□□ 0.63
C9orf3-221ENST00000489562 PIP4K2BP78356 416 aa19■□□□□ 0.63
C9orf3-221ENST00000489562 SCAF1Q9H7N4 1312 aaKnown RBP19■□□□□ 0.63
C9orf3-221ENST00000489562 PIK3C2AO00443 1686 aa18.99■□□□□ 0.63
C9orf3-221ENST00000489562 TNS3Q68CZ2 1445 aa18.98■□□□□ 0.63
C9orf3-221ENST00000489562 COL16A1Q07092 1604 aaPredicted RBP18.97■□□□□ 0.63
C9orf3-221ENST00000489562 AMER1Q5JTC6 1135 aaPredicted RBP18.97■□□□□ 0.63
C9orf3-221ENST00000489562 ARHGEF10O15013 1369 aa18.96■□□□□ 0.63
C9orf3-221ENST00000489562 PAK3O75914 559 aaPredicted RBP18.96■□□□□ 0.63
C9orf3-221ENST00000489562 XPCQ01831 940 aaPredicted RBP18.96■□□□□ 0.63
C9orf3-221ENST00000489562 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.96■□□□□ 0.63
C9orf3-221ENST00000489562 DDX17Q92841 729 aaKnown RBP18.95■□□□□ 0.62
C9orf3-221ENST00000489562 SPATA31A3Q5VYP0 1347 aa18.95■□□□□ 0.62
C9orf3-221ENST00000489562 USP31Q70CQ4 1352 aa18.94■□□□□ 0.62
C9orf3-221ENST00000489562 MARF1Q9Y4F3 1742 aaKnown RBP18.94■□□□□ 0.62
C9orf3-221ENST00000489562 FYB1O15117 783 aa18.94■□□□□ 0.62
C9orf3-221ENST00000489562 DIEXFQ68CQ4 756 aaKnown RBP18.94■□□□□ 0.62
C9orf3-221ENST00000489562 NME9Q86XW9 330 aa18.93■□□□□ 0.62
C9orf3-221ENST00000489562 ABTB2Q8N961 1025 aa18.93■□□□□ 0.62
C9orf3-221ENST00000489562 LRRC59Q96AG4 307 aaKnown RBP18.93■□□□□ 0.62
C9orf3-221ENST00000489562 MED1Q15648 1581 aaPredicted RBP18.93■□□□□ 0.62
C9orf3-221ENST00000489562 OVOS2A0A0J9YW53 1432 aa18.92■□□□□ 0.62
C9orf3-221ENST00000489562 OVOS2Q6IE36 1432 aa18.92■□□□□ 0.62
C9orf3-221ENST00000489562 NLRP13Q86W25 1043 aa18.91■□□□□ 0.62
C9orf3-221ENST00000489562 COG3Q96JB2 828 aa18.91■□□□□ 0.62
C9orf3-221ENST00000489562 COL22A1Q8NFW1 1626 aaPredicted RBP18.91■□□□□ 0.62
C9orf3-221ENST00000489562 NLRP6P59044 892 aa18.9■□□□□ 0.62
C9orf3-221ENST00000489562 GGNBP2Q9H3C7 697 aa18.9■□□□□ 0.62
C9orf3-221ENST00000489562 CRYBG1Q9Y4K1 1723 aa18.9■□□□□ 0.62
C9orf3-221ENST00000489562 SHPRHQ149N8 1683 aa18.89■□□□□ 0.61
C9orf3-221ENST00000489562 ANP32CO43423 234 aa18.89■□□□□ 0.61
C9orf3-221ENST00000489562 CC2D1BQ5T0F9 858 aaKnown RBP18.89■□□□□ 0.61
C9orf3-221ENST00000489562 LMOD2Q6P5Q4 547 aa18.89■□□□□ 0.61
C9orf3-221ENST00000489562 PARD3Q8TEW0 1356 aa18.89■□□□□ 0.61
C9orf3-221ENST00000489562 PHRF1Q9P1Y6 1649 aaKnown RBP18.89■□□□□ 0.61
C9orf3-221ENST00000489562 ABCA3Q99758 1704 aa18.88■□□□□ 0.61
C9orf3-221ENST00000489562 RALBP1Q15311 655 aa18.88■□□□□ 0.61
C9orf3-221ENST00000489562 SLIT3O75094 1523 aa18.88■□□□□ 0.61
C9orf3-221ENST00000489562 USP19O94966 1318 aa18.87■□□□□ 0.61
C9orf3-221ENST00000489562 MAP2P11137 1827 aaKnown RBP18.87■□□□□ 0.61
C9orf3-221ENST00000489562 MORC1Q86VD1 984 aa18.87■□□□□ 0.61
C9orf3-221ENST00000489562 PRKRIP1Q9H875 184 aaPredicted RBP18.85■□□□□ 0.61
C9orf3-221ENST00000489562 PNPLA6Q8IY17 1366 aa18.84■□□□□ 0.61
C9orf3-221ENST00000489562 NUTM2GQ5VZR2 741 aa18.84■□□□□ 0.61
C9orf3-221ENST00000489562 KCNH5Q8NCM2 988 aa18.84■□□□□ 0.61
C9orf3-221ENST00000489562 ZRANB1Q9UGI0 708 aa18.84■□□□□ 0.61
C9orf3-221ENST00000489562 LTN1O94822 1766 aa18.83■□□□□ 0.61
C9orf3-221ENST00000489562 AATKQ6ZMQ8 1374 aa18.83■□□□□ 0.61
C9orf3-221ENST00000489562 JCADQ9P266 1359 aa18.83■□□□□ 0.61
C9orf3-221ENST00000489562 SOCS7O14512 581 aa18.83■□□□□ 0.6
C9orf3-221ENST00000489562 NFAT5O94916 1531 aa18.83■□□□□ 0.6
C9orf3-221ENST00000489562 CNGB1Q14028 1251 aaPredicted RBP18.82■□□□□ 0.6
C9orf3-221ENST00000489562 HSPA1LP34931 641 aa18.81■□□□□ 0.6
C9orf3-221ENST00000489562 MYBBP1AQ9BQG0 1328 aaKnown RBP18.8■□□□□ 0.6
C9orf3-221ENST00000489562 GCP02774 474 aa18.79■□□□□ 0.6
C9orf3-221ENST00000489562 ABCC6O95255 1503 aa18.78■□□□□ 0.6
C9orf3-221ENST00000489562 KIF24Q5T7B8 1368 aa18.78■□□□□ 0.6
C9orf3-221ENST00000489562 SMG6Q86US8 1419 aaKnown RBP18.77■□□□□ 0.6
C9orf3-221ENST00000489562 TNNT2P45379 298 aaPredicted RBP18.77■□□□□ 0.6
C9orf3-221ENST00000489562 HAP1P54257 671 aaPredicted RBP18.77■□□□□ 0.6
C9orf3-221ENST00000489562 SPATA31A6Q5VVP1 1343 aa18.76■□□□□ 0.59
C9orf3-221ENST00000489562 PPP2R1AP30153 589 aa18.76■□□□□ 0.59
C9orf3-221ENST00000489562 ILDR2Q71H61 639 aa18.76■□□□□ 0.59
C9orf3-221ENST00000489562 CPDO75976 1380 aa18.76■□□□□ 0.59
C9orf3-221ENST00000489562 CABLES1Q8TDN4 633 aa18.75■□□□□ 0.59
C9orf3-221ENST00000489562 RTL1A6NKG5 1358 aa18.75■□□□□ 0.59
C9orf3-221ENST00000489562 CDK12Q9NYV4 1490 aaPredicted RBP18.74■□□□□ 0.59
C9orf3-221ENST00000489562 SOX12O15370 315 aa18.74■□□□□ 0.59
C9orf3-221ENST00000489562 POLKQ9UBT6 870 aa18.73■□□□□ 0.59
C9orf3-221ENST00000489562 PEAK1Q9H792 1746 aa18.73■□□□□ 0.59
C9orf3-221ENST00000489562 MAP3K19Q56UN5 1328 aa18.73■□□□□ 0.59
C9orf3-221ENST00000489562 FLT4P35916 1363 aa18.72■□□□□ 0.59
C9orf3-221ENST00000489562 PLEKHG5O94827 1062 aa18.72■□□□□ 0.59
C9orf3-221ENST00000489562 ARHGEF25Q86VW2 580 aa18.72■□□□□ 0.59
C9orf3-221ENST00000489562 COL18A1P39060 1754 aa18.72■□□□□ 0.59
C9orf3-221ENST00000489562 COL14A1Q05707 1796 aaKnown RBP18.72■□□□□ 0.59
C9orf3-221ENST00000489562 MTHFSP49914 203 aa18.71■□□□□ 0.59
C9orf3-221ENST00000489562 RRS1Q15050 365 aaKnown RBP18.71■□□□□ 0.59
C9orf3-221ENST00000489562 RGPD5Q99666 1765 aa18.7■□□□□ 0.58
C9orf3-221ENST00000489562 KIAA0232Q92628 1395 aa18.7■□□□□ 0.58
C9orf3-221ENST00000489562 AMPHP49418 695 aa18.7■□□□□ 0.58
C9orf3-221ENST00000489562 CFAP53Q96M91 514 aa18.7■□□□□ 0.58
C9orf3-221ENST00000489562 EMILIN1Q9Y6C2 1016 aa18.7■□□□□ 0.58
C9orf3-221ENST00000489562 INSRP06213 1382 aa18.69■□□□□ 0.58
C9orf3-221ENST00000489562 BLMP54132 1417 aaPredicted RBP18.69■□□□□ 0.58
C9orf3-221ENST00000489562 CCER2I3L3R5 266 aa18.69■□□□□ 0.58
C9orf3-221ENST00000489562 FBLN1P23142 703 aa18.69■□□□□ 0.58
C9orf3-221ENST00000489562 ZC3H6P61129 1189 aaKnown RBP18.69■□□□□ 0.58
C9orf3-221ENST00000489562 MIER1Q8N108 512 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms