RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 SLIT2O94813 1529 aa25.37■■□□□ 1.65
ITGB1-215ENST00000488494 CCDC61Q9Y6R9 512 aa25.37■■□□□ 1.65
ITGB1-215ENST00000488494 PAK3O75914 559 aaPredicted RBP25.36■■□□□ 1.65
ITGB1-215ENST00000488494 CABP2Q9NPB3 220 aa25.36■■□□□ 1.65
ITGB1-215ENST00000488494 ACEP12821 1306 aa25.35■■□□□ 1.65
ITGB1-215ENST00000488494 NWD2Q9ULI1 1742 aa25.33■■□□□ 1.65
ITGB1-215ENST00000488494 PLEKHG3A1L390 1219 aa25.32■■□□□ 1.64
ITGB1-215ENST00000488494 PHRF1Q9P1Y6 1649 aaKnown RBP25.32■■□□□ 1.64
ITGB1-215ENST00000488494 EVC2Q86UK5 1308 aa25.31■■□□□ 1.64
ITGB1-215ENST00000488494 CARD11Q9BXL7 1154 aa25.3■■□□□ 1.64
ITGB1-215ENST00000488494 UNC5CLQ8IV45 518 aa25.29■■□□□ 1.64
ITGB1-215ENST00000488494 GLI3P10071 1580 aa25.29■■□□□ 1.64
ITGB1-215ENST00000488494 NRAPQ86VF7 1730 aa25.28■■□□□ 1.64
ITGB1-215ENST00000488494 COL14A1Q05707 1796 aaKnown RBP25.28■■□□□ 1.64
ITGB1-215ENST00000488494 SBNO2Q9Y2G9 1366 aa25.25■■□□□ 1.63
ITGB1-215ENST00000488494 NRKQ7Z2Y5 1582 aa25.25■■□□□ 1.63
ITGB1-215ENST00000488494 NUTM2GQ5VZR2 741 aa25.24■■□□□ 1.63
ITGB1-215ENST00000488494 GJD4Q96KN9 370 aaPredicted RBP25.24■■□□□ 1.63
ITGB1-215ENST00000488494 USP6P35125 1406 aa25.23■■□□□ 1.63
ITGB1-215ENST00000488494 FAM83GA6ND36 823 aa25.23■■□□□ 1.63
ITGB1-215ENST00000488494 CABP1Q9NZU7 370 aa25.23■■□□□ 1.63
ITGB1-215ENST00000488494 UPF1Q92900 1129 aaKnown RBP eCLIP25.21■■□□□ 1.63
ITGB1-215ENST00000488494 PCGF6Q9BYE7 350 aa25.21■■□□□ 1.63
ITGB1-215ENST00000488494 ATAD2Q6PL18 1390 aa25.2■■□□□ 1.63
ITGB1-215ENST00000488494 KIAA0232Q92628 1395 aa25.19■■□□□ 1.62
ITGB1-215ENST00000488494 VPS72Q15906 364 aa25.19■■□□□ 1.62
ITGB1-215ENST00000488494 PRDM11Q9NQV5 511 aa25.19■■□□□ 1.62
ITGB1-215ENST00000488494 BRD4O60885 1362 aaPredicted RBP25.18■■□□□ 1.62
ITGB1-215ENST00000488494 AKAP12Q02952 1782 aa25.18■■□□□ 1.62
ITGB1-215ENST00000488494 ABTB2Q8N961 1025 aa25.18■■□□□ 1.62
ITGB1-215ENST00000488494 BTG4Q9NY30 223 aa25.18■■□□□ 1.62
ITGB1-215ENST00000488494 EP400Q96L91 3159 aa25.17■■□□□ 1.62
ITGB1-215ENST00000488494 USP19O94966 1318 aa25.17■■□□□ 1.62
ITGB1-215ENST00000488494 PIK3C2AO00443 1686 aa25.17■■□□□ 1.62
ITGB1-215ENST00000488494 CCDC9Q9Y3X0 531 aaKnown RBP25.17■■□□□ 1.62
ITGB1-215ENST00000488494 SSH2Q76I76 1423 aa25.15■■□□□ 1.62
ITGB1-215ENST00000488494 MON2Q7Z3U7 1717 aa25.12■■□□□ 1.61
ITGB1-215ENST00000488494 ZC3H6P61129 1189 aaKnown RBP25.12■■□□□ 1.61
ITGB1-215ENST00000488494 CHRNA2Q15822 529 aa25.12■■□□□ 1.61
ITGB1-215ENST00000488494 CLSPNQ9HAW4 1339 aa25.12■■□□□ 1.61
ITGB1-215ENST00000488494 SLIT3O75094 1523 aa25.11■■□□□ 1.61
ITGB1-215ENST00000488494 CPSF1Q10570 1443 aaKnown RBP25.11■■□□□ 1.61
ITGB1-215ENST00000488494 LMO7Q8WWI1 1683 aa25.1■■□□□ 1.61
ITGB1-215ENST00000488494 BRWD3Q6RI45 1802 aa25.1■■□□□ 1.61
ITGB1-215ENST00000488494 NLRP13Q86W25 1043 aa25.1■■□□□ 1.61
ITGB1-215ENST00000488494 CPDO75976 1380 aa25.09■■□□□ 1.61
ITGB1-215ENST00000488494 KTN1Q86UP2 1357 aaKnown RBP25.07■■□□□ 1.6
ITGB1-215ENST00000488494 SEPT12Q8IYM1 358 aa25.07■■□□□ 1.6
ITGB1-215ENST00000488494 CD163L1Q9NR16 1453 aa25.07■■□□□ 1.6
ITGB1-215ENST00000488494 USP47Q96K76 1375 aa25.06■■□□□ 1.6
ITGB1-215ENST00000488494 ST20-MTHFSA0A0A6YYL1 179 aa25.06■■□□□ 1.6
ITGB1-215ENST00000488494 NLRP6P59044 892 aa25.06■■□□□ 1.6
ITGB1-215ENST00000488494 TTC21BQ7Z4L5 1316 aa25.06■■□□□ 1.6
ITGB1-215ENST00000488494 A0A0G2JS52 829 aa25.05■■□□□ 1.6
ITGB1-215ENST00000488494 GCP02774 474 aa25.05■■□□□ 1.6
ITGB1-215ENST00000488494 MYT1Q01538 1121 aa25.05■■□□□ 1.6
ITGB1-215ENST00000488494 TESK2Q96S53 571 aa25.05■■□□□ 1.6
ITGB1-215ENST00000488494 ZNF692Q9BU19 519 aaPredicted RBP25.05■■□□□ 1.6
ITGB1-215ENST00000488494 SPATA31A5Q5VU36 1347 aa25.05■■□□□ 1.6
ITGB1-215ENST00000488494 SPATA31A7Q8IWB4 1347 aa25.05■■□□□ 1.6
ITGB1-215ENST00000488494 THSD7AQ9UPZ6 1657 aa25.04■■□□□ 1.6
ITGB1-215ENST00000488494 CAMTA1Q9Y6Y1 1673 aa25.04■■□□□ 1.6
ITGB1-215ENST00000488494 FAM98CQ17RN3 349 aaKnown RBP25.04■■□□□ 1.6
ITGB1-215ENST00000488494 STRN4Q9NRL3 753 aa25.04■■□□□ 1.6
ITGB1-215ENST00000488494 TMC1Q8TDI8 760 aa25.03■■□□□ 1.6
ITGB1-215ENST00000488494 TTC21AQ8NDW8 1320 aa25.03■■□□□ 1.6
ITGB1-215ENST00000488494 ONECUT3O60422 494 aaPredicted RBP25.02■■□□□ 1.6
ITGB1-215ENST00000488494 TIMELESSQ9UNS1 1208 aa25.01■■□□□ 1.59
ITGB1-215ENST00000488494 ZBTB7CA1YPR0 619 aa25■■□□□ 1.59
ITGB1-215ENST00000488494 COL5A2P05997 1499 aaPredicted RBP25■■□□□ 1.59
ITGB1-215ENST00000488494 A0A1W2PP64 1363 aa24.99■■□□□ 1.59
ITGB1-215ENST00000488494 NFAT5O94916 1531 aa24.99■■□□□ 1.59
ITGB1-215ENST00000488494 SPATA31A1Q5TZJ5 1347 aa24.99■■□□□ 1.59
ITGB1-215ENST00000488494 USP54Q70EL1 1684 aa24.99■■□□□ 1.59
ITGB1-215ENST00000488494 CCER1Q8TC90 406 aaPredicted RBP24.99■■□□□ 1.59
ITGB1-215ENST00000488494 HDGFL2Q7Z4V5 671 aaPredicted RBP24.98■■□□□ 1.59
ITGB1-215ENST00000488494 SLC12A5Q9H2X9 1139 aa24.98■■□□□ 1.59
ITGB1-215ENST00000488494 EDC4Q6P2E9 1401 aaKnown RBP24.97■■□□□ 1.59
ITGB1-215ENST00000488494 NINLQ9Y2I6 1382 aa24.97■■□□□ 1.59
ITGB1-215ENST00000488494 KRT27Q7Z3Y8 459 aa24.97■■□□□ 1.59
ITGB1-215ENST00000488494 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.97■■□□□ 1.599e-7■■■□□ 16.9
ITGB1-215ENST00000488494 PUS7Q96PZ0 661 aaKnown RBP24.97■■□□□ 1.59
ITGB1-215ENST00000488494 EVA1CP58658 441 aa24.96■■□□□ 1.59
ITGB1-215ENST00000488494 AATKQ6ZMQ8 1374 aa24.95■■□□□ 1.59
ITGB1-215ENST00000488494 SOX12O15370 315 aa24.95■■□□□ 1.58
ITGB1-215ENST00000488494 TERF2IPQ9NYB0 399 aa24.95■■□□□ 1.58
ITGB1-215ENST00000488494 LARP1Q6PKG0 1096 aaKnown RBP24.94■■□□□ 1.58
ITGB1-215ENST00000488494 USP35Q9P2H5 1018 aa24.94■■□□□ 1.58
ITGB1-215ENST00000488494 COL18A1P39060 1754 aa24.94■■□□□ 1.58
ITGB1-215ENST00000488494 BLMP54132 1417 aaPredicted RBP24.94■■□□□ 1.58
ITGB1-215ENST00000488494 SLC24A1O60721 1099 aa24.93■■□□□ 1.58
ITGB1-215ENST00000488494 NME9Q86XW9 330 aa24.93■■□□□ 1.58
ITGB1-215ENST00000488494 KCNH5Q8NCM2 988 aa24.92■■□□□ 1.58
ITGB1-215ENST00000488494 ZRANB1Q9UGI0 708 aa24.92■■□□□ 1.58
ITGB1-215ENST00000488494 USP31Q70CQ4 1352 aa24.92■■□□□ 1.58
ITGB1-215ENST00000488494 TMF1P82094 1093 aa24.9■■□□□ 1.58
ITGB1-215ENST00000488494 CCDC125Q86Z20 511 aa24.9■■□□□ 1.58
ITGB1-215ENST00000488494 CRB1P82279 1406 aa24.89■■□□□ 1.58
ITGB1-215ENST00000488494 ABCC6O95255 1503 aa24.89■■□□□ 1.57
ITGB1-215ENST00000488494 OVOS2A0A0J9YW53 1432 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms