RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 USP54Q70EL1 1684 aa15.43■□□□□ 0.06
UBE4B-210ENST00000488228 SPATA31A3Q5VYP0 1347 aa15.43■□□□□ 0.06
UBE4B-210ENST00000488228 SLC24A1O60721 1099 aa15.42■□□□□ 0.06
UBE4B-210ENST00000488228 LRRC59Q96AG4 307 aaKnown RBP15.42■□□□□ 0.06
UBE4B-210ENST00000488228 KTN1Q86UP2 1357 aaKnown RBP15.41■□□□□ 0.06
UBE4B-210ENST00000488228 C11orf95C9JLR9 678 aaPredicted RBP15.41■□□□□ 0.06
UBE4B-210ENST00000488228 PUS7Q96PZ0 661 aaKnown RBP15.41■□□□□ 0.06
UBE4B-210ENST00000488228 SLC12A5Q9H2X9 1139 aa15.41■□□□□ 0.06
UBE4B-210ENST00000488228 SSH2Q76I76 1423 aa15.41■□□□□ 0.06
UBE4B-210ENST00000488228 ARHGEF10O15013 1369 aa15.4■□□□□ 0.06
UBE4B-210ENST00000488228 CDCA8Q53HL2 280 aa15.4■□□□□ 0.06
UBE4B-210ENST00000488228 LMOD2Q6P5Q4 547 aa15.4■□□□□ 0.06
UBE4B-210ENST00000488228 ANKRD36BQ8N2N9 1353 aa15.39■□□□□ 0.05
UBE4B-210ENST00000488228 PLCH1Q4KWH8 1693 aa15.39■□□□□ 0.05
UBE4B-210ENST00000488228 PAK3O75914 559 aaPredicted RBP15.39■□□□□ 0.05
UBE4B-210ENST00000488228 PLEKHG5O94827 1062 aa15.39■□□□□ 0.05
UBE4B-210ENST00000488228 KIF7Q2M1P5 1343 aa15.39■□□□□ 0.05
UBE4B-210ENST00000488228 ANKRD26Q9UPS8 1709 aa15.38■□□□□ 0.05
UBE4B-210ENST00000488228 EDC4Q6P2E9 1401 aaKnown RBP15.38■□□□□ 0.05
UBE4B-210ENST00000488228 SPATA31A6Q5VVP1 1343 aa15.37■□□□□ 0.05
UBE4B-210ENST00000488228 CCDC7Q96M83 1385 aa15.36■□□□□ 0.05
UBE4B-210ENST00000488228 NUTM2BA6NNL0 878 aaPredicted RBP15.36■□□□□ 0.05
UBE4B-210ENST00000488228 NUTM2EB1AL46 878 aaPredicted RBP15.36■□□□□ 0.05
UBE4B-210ENST00000488228 NUTM2GQ5VZR2 741 aa15.36■□□□□ 0.05
UBE4B-210ENST00000488228 HDGFL2Q7Z4V5 671 aaPredicted RBP15.36■□□□□ 0.05
UBE4B-210ENST00000488228 NUTM2AQ8IVF1 878 aaPredicted RBP15.36■□□□□ 0.05
UBE4B-210ENST00000488228 TERF2IPQ9NYB0 399 aa15.36■□□□□ 0.05
UBE4B-210ENST00000488228 SLIT3O75094 1523 aa15.36■□□□□ 0.05
UBE4B-210ENST00000488228 LTN1O94822 1766 aa15.36■□□□□ 0.05
UBE4B-210ENST00000488228 BRD4O60885 1362 aaPredicted RBP15.36■□□□□ 0.05
UBE4B-210ENST00000488228 TTC21BQ7Z4L5 1316 aa15.35■□□□□ 0.05
UBE4B-210ENST00000488228 NSD3Q9BZ95 1437 aa15.34■□□□□ 0.05
UBE4B-210ENST00000488228 CABLES1Q8TDN4 633 aa15.34■□□□□ 0.05
UBE4B-210ENST00000488228 WASHC2AQ641Q2 1341 aa15.34■□□□□ 0.05
UBE4B-210ENST00000488228 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.33■□□□□ 0.04
UBE4B-210ENST00000488228 ZNF692Q9BU19 519 aaPredicted RBP15.33■□□□□ 0.04
UBE4B-210ENST00000488228 NRAPQ86VF7 1730 aa15.32■□□□□ 0.04
UBE4B-210ENST00000488228 COL14A1Q05707 1796 aaKnown RBP15.32■□□□□ 0.04
UBE4B-210ENST00000488228 ABTB2Q8N961 1025 aa15.32■□□□□ 0.04
UBE4B-210ENST00000488228 TTC21AQ8NDW8 1320 aa15.32■□□□□ 0.04
UBE4B-210ENST00000488228 NFAT5O94916 1531 aa15.32■□□□□ 0.04
UBE4B-210ENST00000488228 ADAMTS2O95450 1211 aa15.31■□□□□ 0.04
UBE4B-210ENST00000488228 NME9Q86XW9 330 aa15.31■□□□□ 0.04
UBE4B-210ENST00000488228 USP19O94966 1318 aa15.31■□□□□ 0.04
UBE4B-210ENST00000488228 OVOS2A0A0J9YW53 1432 aa15.31■□□□□ 0.04
UBE4B-210ENST00000488228 OVOS2Q6IE36 1432 aa15.31■□□□□ 0.04
UBE4B-210ENST00000488228 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.31■□□□□ 0.04
UBE4B-210ENST00000488228 NWD2Q9ULI1 1742 aa15.31■□□□□ 0.04
UBE4B-210ENST00000488228 RGPD5Q99666 1765 aa15.3■□□□□ 0.04
UBE4B-210ENST00000488228 ZRANB1Q9UGI0 708 aa15.3■□□□□ 0.04
UBE4B-210ENST00000488228 LMO7Q8WWI1 1683 aa15.29■□□□□ 0.04
UBE4B-210ENST00000488228 HAP1P54257 671 aaPredicted RBP15.29■□□□□ 0.04
UBE4B-210ENST00000488228 MEX3CQ5U5Q3 659 aaKnown RBP15.29■□□□□ 0.04
UBE4B-210ENST00000488228 CARD14Q9BXL6 1004 aa15.28■□□□□ 0.04
UBE4B-210ENST00000488228 USP31Q70CQ4 1352 aa15.27■□□□□ 0.04
UBE4B-210ENST00000488228 COL18A1P39060 1754 aa15.27■□□□□ 0.04
UBE4B-210ENST00000488228 NLRP6P59044 892 aa15.27■□□□□ 0.04
UBE4B-210ENST00000488228 PANK3Q9H999 370 aa15.27■□□□□ 0.04
UBE4B-210ENST00000488228 NLRP13Q86W25 1043 aa15.26■□□□□ 0.03
UBE4B-210ENST00000488228 C8orf37Q96NL8 207 aa15.26■□□□□ 0.03
UBE4B-210ENST00000488228 KIAA0232Q92628 1395 aa15.25■□□□□ 0.03
UBE4B-210ENST00000488228 SOX12O15370 315 aa15.25■□□□□ 0.03
UBE4B-210ENST00000488228 SLIT2O94813 1529 aa15.24■□□□□ 0.03
UBE4B-210ENST00000488228 PHF23Q9BUL5 403 aaPredicted RBP15.24■□□□□ 0.03
UBE4B-210ENST00000488228 MAP2P11137 1827 aaKnown RBP15.24■□□□□ 0.03
UBE4B-210ENST00000488228 PEAK1Q9H792 1746 aa15.23■□□□□ 0.03
UBE4B-210ENST00000488228 GGNBP2Q9H3C7 697 aa15.23■□□□□ 0.03
UBE4B-210ENST00000488228 AFF2P51816 1311 aa15.22■□□□□ 0.03
UBE4B-210ENST00000488228 CGNL1Q0VF96 1302 aa15.22■□□□□ 0.03
UBE4B-210ENST00000488228 ZC3H6P61129 1189 aaKnown RBP15.22■□□□□ 0.03
UBE4B-210ENST00000488228 CPDO75976 1380 aa15.22■□□□□ 0.03
UBE4B-210ENST00000488228 ZBTB7CA1YPR0 619 aa15.21■□□□□ 0.03
UBE4B-210ENST00000488228 FYB1O15117 783 aa15.21■□□□□ 0.03
UBE4B-210ENST00000488228 GCP02774 474 aa15.21■□□□□ 0.03
UBE4B-210ENST00000488228 PRDM11Q9NQV5 511 aa15.21■□□□□ 0.03
UBE4B-210ENST00000488228 WNK3Q9BYP7 1800 aa15.21■□□□□ 0.03
UBE4B-210ENST00000488228 ABCC6O95255 1503 aa15.21■□□□□ 0.03
UBE4B-210ENST00000488228 BCL9LQ86UU0 1499 aa15.2■□□□□ 0.02
UBE4B-210ENST00000488228 CAMTA1Q9Y6Y1 1673 aa15.2■□□□□ 0.02
UBE4B-210ENST00000488228 CHRNA2Q15822 529 aa15.2■□□□□ 0.02
UBE4B-210ENST00000488228 NGLY1Q96IV0 654 aa15.2■□□□□ 0.02
UBE4B-210ENST00000488228 COG3Q96JB2 828 aa15.2■□□□□ 0.02
UBE4B-210ENST00000488228 RGS17Q9UGC6 210 aaPredicted RBP15.19■□□□□ 0.02
UBE4B-210ENST00000488228 RGPD2P0DJD1 1756 aa15.19■□□□□ 0.02
UBE4B-210ENST00000488228 FAM83GA6ND36 823 aa15.18■□□□□ 0.02
UBE4B-210ENST00000488228 NSD2O96028 1365 aa15.18■□□□□ 0.02
UBE4B-210ENST00000488228 GLI3P10071 1580 aa15.18■□□□□ 0.02
UBE4B-210ENST00000488228 FAM208AQ9UK61 1670 aaKnown RBP15.18■□□□□ 0.02
UBE4B-210ENST00000488228 COL5A2P05997 1499 aaPredicted RBP15.17■□□□□ 0.02
UBE4B-210ENST00000488228 KCNH5Q8NCM2 988 aa15.17■□□□□ 0.02
UBE4B-210ENST00000488228 KNSTRNQ9Y448 316 aa15.17■□□□□ 0.02
UBE4B-210ENST00000488228 FBLN1P23142 703 aa15.16■□□□□ 0.02
UBE4B-210ENST00000488228 USP21Q9UK80 565 aa15.16■□□□□ 0.02
UBE4B-210ENST00000488228 ATRNO75882 1429 aa15.16■□□□□ 0.02
UBE4B-210ENST00000488228 AMER1Q5JTC6 1135 aaPredicted RBP15.15■□□□□ 0.02
UBE4B-210ENST00000488228 FNBP4Q8N3X1 1017 aaPredicted RBP15.15■□□□□ 0.02
UBE4B-210ENST00000488228 BTG4Q9NY30 223 aa15.15■□□□□ 0.02
UBE4B-210ENST00000488228 AATKQ6ZMQ8 1374 aa15.14■□□□□ 0.01
UBE4B-210ENST00000488228 PER1O15534 1290 aaPredicted RBP15.14■□□□□ 0.01
UBE4B-210ENST00000488228 CNGB1Q14028 1251 aaPredicted RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms