RNA–Protein interactions for RNA: ENST00000482651.5

HDGF-208, Transcript of heparin binding growth factor, human

TSL 3

Gene HDGF, Length 966 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDGF-208	ENST00000482651	KRT28	Q7Z3Y7	464 aa		12.59	□□□□□ -0.39
HDGF-208	ENST00000482651	SPATA31A3	Q5VYP0	1347 aa		12.59	□□□□□ -0.39
HDGF-208	ENST00000482651	WASL	O00401	505 aa	Predicted RBP	12.58	□□□□□ -0.4
HDGF-208	ENST00000482651	PSME1	Q06323	249 aa		12.58	□□□□□ -0.4
HDGF-208	ENST00000482651	L3MBTL2	Q969R5	705 aa		12.58	□□□□□ -0.4
HDGF-208	ENST00000482651	SIN3A	Q96ST3	1273 aa		12.58	□□□□□ -0.4
HDGF-208	ENST00000482651	COL22A1	Q8NFW1	1626 aa	Predicted RBP	12.58	□□□□□ -0.4
HDGF-208	ENST00000482651	RXRB	P28702	533 aa		12.57	□□□□□ -0.4
HDGF-208	ENST00000482651	NBPF1	Q3BBV0	1214 aa		12.57	□□□□□ -0.4
HDGF-208	ENST00000482651	NGLY1	Q96IV0	654 aa		12.57	□□□□□ -0.4
HDGF-208	ENST00000482651	TULP4	Q9NRJ4	1543 aa		12.57	□□□□□ -0.4
HDGF-208	ENST00000482651	PMFBP1	Q8TBY8	1022 aa		12.56	□□□□□ -0.4
HDGF-208	ENST00000482651	KIAA1210	Q9ULL0	1709 aa		12.56	□□□□□ -0.4
HDGF-208	ENST00000482651	PRR36	Q9H6K5	1346 aa		12.56	□□□□□ -0.4
HDGF-208	ENST00000482651	SBNO1	A3KN83	1393 aa		12.56	□□□□□ -0.4
HDGF-208	ENST00000482651	USP32	Q8NFA0	1604 aa		12.55	□□□□□ -0.4
HDGF-208	ENST00000482651	TNS3	Q68CZ2	1445 aa		12.55	□□□□□ -0.4
HDGF-208	ENST00000482651	NEUROD1	Q13562	356 aa		12.55	□□□□□ -0.4
HDGF-208	ENST00000482651	FNBP4	Q8N3X1	1017 aa	Predicted RBP	12.55	□□□□□ -0.4
HDGF-208	ENST00000482651	ARHGEF28	Q8N1W1	1705 aa	Known RBP	12.54	□□□□□ -0.4
HDGF-208	ENST00000482651	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.54	□□□□□ -0.4
HDGF-208	ENST00000482651	QTRT2	Q9H974	415 aa	Known RBP	12.54	□□□□□ -0.4
HDGF-208	ENST00000482651	USP21	Q9UK80	565 aa		12.53	□□□□□ -0.4
HDGF-208	ENST00000482651	ARHGEF10	O15013	1369 aa		12.53	□□□□□ -0.4
HDGF-208	ENST00000482651	ATP7B	P35670	1465 aa		12.53	□□□□□ -0.4
HDGF-208	ENST00000482651	RBM6	P78332	1123 aa	Known RBP	12.52	□□□□□ -0.41
HDGF-208	ENST00000482651	NUDT16	Q96DE0	195 aa	Known RBP	12.52	□□□□□ -0.41
HDGF-208	ENST00000482651	CDK19	Q9BWU1	502 aa		12.52	□□□□□ -0.41
HDGF-208	ENST00000482651	CENPJ	Q9HC77	1338 aa	Predicted RBP	12.52	□□□□□ -0.41
HDGF-208	ENST00000482651	GPRASP1	Q5JY77	1395 aa		12.52	□□□□□ -0.41
HDGF-208	ENST00000482651	NGDN	Q8NEJ9	315 aa	Known RBP	12.51	□□□□□ -0.41
HDGF-208	ENST00000482651	TRPC5	Q9UL62	973 aa	Predicted RBP	12.51	□□□□□ -0.41
HDGF-208	ENST00000482651	LMOD2	Q6P5Q4	547 aa		12.5	□□□□□ -0.41
HDGF-208	ENST00000482651	ATRN	O75882	1429 aa		12.5	□□□□□ -0.41
HDGF-208	ENST00000482651	BCL9L	Q86UU0	1499 aa		12.49	□□□□□ -0.41
HDGF-208	ENST00000482651	RGS12	O14924	1447 aa		12.49	□□□□□ -0.41
HDGF-208	ENST00000482651	ROCK2	O75116	1388 aa	Known RBP	12.49	□□□□□ -0.41
HDGF-208	ENST00000482651	RGPD8	O14715	1765 aa	Predicted RBP	12.48	□□□□□ -0.41
HDGF-208	ENST00000482651	CLSPN	Q9HAW4	1339 aa		12.48	□□□□□ -0.41
HDGF-208	ENST00000482651	PELP1	Q8IZL8	1130 aa	Known RBP	12.48	□□□□□ -0.41
HDGF-208	ENST00000482651	CCER1	Q8TC90	406 aa	Predicted RBP	12.48	□□□□□ -0.41
HDGF-208	ENST00000482651	CABLES1	Q8TDN4	633 aa		12.48	□□□□□ -0.41
HDGF-208	ENST00000482651	CCDC61	Q9Y6R9	512 aa		12.48	□□□□□ -0.41
HDGF-208	ENST00000482651	SLIT2	O94813	1529 aa		12.47	□□□□□ -0.41
HDGF-208	ENST00000482651	POLR3A	O14802	1390 aa	Predicted RBP	12.47	□□□□□ -0.41
HDGF-208	ENST00000482651	PLEKHG3	A1L390	1219 aa		12.47	□□□□□ -0.41
HDGF-208	ENST00000482651	NBPF8	Q3BBV2	869 aa		12.47	□□□□□ -0.41
HDGF-208	ENST00000482651	HS6ST3	Q8IZP7	471 aa		12.47	□□□□□ -0.41
HDGF-208	ENST00000482651	TONSL	Q96HA7	1378 aa		12.46	□□□□□ -0.41
HDGF-208	ENST00000482651	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.46	□□□□□ -0.41
HDGF-208	ENST00000482651	SRPK2	P78362	688 aa	Known RBP	12.46	□□□□□ -0.41
HDGF-208	ENST00000482651	UNC5CL	Q8IV45	518 aa		12.46	□□□□□ -0.41
HDGF-208	ENST00000482651	TRPM1	Q7Z4N2	1603 aa		12.46	□□□□□ -0.41
HDGF-208	ENST00000482651	ACE	P12821	1306 aa		12.45	□□□□□ -0.42
HDGF-208	ENST00000482651	PAK3	O75914	559 aa	Predicted RBP	12.45	□□□□□ -0.42
HDGF-208	ENST00000482651	PLEKHG5	O94827	1062 aa		12.45	□□□□□ -0.42
HDGF-208	ENST00000482651	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.44	□□□□□ -0.42	2e-23	■■■■■ 40.9
HDGF-208	ENST00000482651	GJD4	Q96KN9	370 aa	Predicted RBP	12.44	□□□□□ -0.42
HDGF-208	ENST00000482651	CABP2	Q9NPB3	220 aa		12.44	□□□□□ -0.42
HDGF-208	ENST00000482651	ITSN1	Q15811	1721 aa		12.44	□□□□□ -0.42
HDGF-208	ENST00000482651	ALS2	Q96Q42	1657 aa		12.44	□□□□□ -0.42
HDGF-208	ENST00000482651	EVC2	Q86UK5	1308 aa		12.43	□□□□□ -0.42
HDGF-208	ENST00000482651	TOPAZ1	Q8N9V7	1692 aa		12.43	□□□□□ -0.42
HDGF-208	ENST00000482651	PLCD3	Q8N3E9	789 aa		12.43	□□□□□ -0.42
HDGF-208	ENST00000482651	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.43	□□□□□ -0.42
HDGF-208	ENST00000482651	PPIP5K1	Q6PFW1	1433 aa		12.43	□□□□□ -0.42
HDGF-208	ENST00000482651	MARF1	Q9Y4F3	1742 aa	Known RBP	12.42	□□□□□ -0.42
HDGF-208	ENST00000482651	FAM83G	A6ND36	823 aa		12.42	□□□□□ -0.42
HDGF-208	ENST00000482651	ABCA3	Q99758	1704 aa		12.42	□□□□□ -0.42
HDGF-208	ENST00000482651	QRICH2	Q9H0J4	1663 aa		12.42	□□□□□ -0.42
HDGF-208	ENST00000482651	RALGAPB	Q86X10	1494 aa		12.41	□□□□□ -0.42
HDGF-208	ENST00000482651	VPS72	Q15906	364 aa		12.41	□□□□□ -0.42
HDGF-208	ENST00000482651	CARD11	Q9BXL7	1154 aa		12.41	□□□□□ -0.42
HDGF-208	ENST00000482651	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	12.41	□□□□□ -0.42
HDGF-208	ENST00000482651	BRD4	O60885	1362 aa	Predicted RBP	12.41	□□□□□ -0.42
HDGF-208	ENST00000482651	POLA2	Q14181	598 aa		12.4	□□□□□ -0.42
HDGF-208	ENST00000482651	CABP1	Q9NZU7	370 aa		12.4	□□□□□ -0.42
HDGF-208	ENST00000482651	NKX1-1	Q15270	411 aa	Predicted RBP	12.39	□□□□□ -0.43
HDGF-208	ENST00000482651	ATAD2	Q6PL18	1390 aa		12.39	□□□□□ -0.43
HDGF-208	ENST00000482651	SBNO2	Q9Y2G9	1366 aa		12.39	□□□□□ -0.43
HDGF-208	ENST00000482651	NUTM2G	Q5VZR2	741 aa		12.38	□□□□□ -0.43
HDGF-208	ENST00000482651	ABTB2	Q8N961	1025 aa		12.38	□□□□□ -0.43
HDGF-208	ENST00000482651	PRDM11	Q9NQV5	511 aa		12.38	□□□□□ -0.43
HDGF-208	ENST00000482651	BTG4	Q9NY30	223 aa		12.38	□□□□□ -0.43
HDGF-208	ENST00000482651	GLI3	P10071	1580 aa		12.38	□□□□□ -0.43
HDGF-208	ENST00000482651	USP19	O94966	1318 aa		12.37	□□□□□ -0.43
HDGF-208	ENST00000482651	USP6	P35125	1406 aa		12.37	□□□□□ -0.43
HDGF-208	ENST00000482651	NWD2	Q9ULI1	1742 aa		12.37	□□□□□ -0.43
HDGF-208	ENST00000482651	CCDC9	Q9Y3X0	531 aa	Known RBP	12.37	□□□□□ -0.43
HDGF-208	ENST00000482651	KIAA0232	Q92628	1395 aa		12.37	□□□□□ -0.43
HDGF-208	ENST00000482651	PLCH1	Q4KWH8	1693 aa		12.37	□□□□□ -0.43
HDGF-208	ENST00000482651	CRYBG1	Q9Y4K1	1723 aa		12.37	□□□□□ -0.43
HDGF-208	ENST00000482651	NLRP13	Q86W25	1043 aa		12.36	□□□□□ -0.43
HDGF-208	ENST00000482651	PODXL2	Q9NZ53	605 aa		12.36	□□□□□ -0.43
HDGF-208	ENST00000482651	COL14A1	Q05707	1796 aa	Known RBP	12.35	□□□□□ -0.43
HDGF-208	ENST00000482651	ONECUT3	O60422	494 aa	Predicted RBP	12.35	□□□□□ -0.43
HDGF-208	ENST00000482651	ZC3H6	P61129	1189 aa	Known RBP	12.35	□□□□□ -0.43
HDGF-208	ENST00000482651	SEPT12	Q8IYM1	358 aa		12.35	□□□□□ -0.43
HDGF-208	ENST00000482651	ZNF692	Q9BU19	519 aa	Predicted RBP	12.35	□□□□□ -0.43
HDGF-208	ENST00000482651	SSH2	Q76I76	1423 aa		12.35	□□□□□ -0.43

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