RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 PSME1Q06323 249 aa23.83■■□□□ 1.41
UPF3A-206ENST00000480362 NME9Q86XW9 330 aa23.83■■□□□ 1.41
UPF3A-206ENST00000480362 NRKQ7Z2Y5 1582 aa23.82■■□□□ 1.4
UPF3A-206ENST00000480362 KIF20BQ96Q89 1820 aa23.82■■□□□ 1.4
UPF3A-206ENST00000480362 FOXO3O43524 673 aa23.82■■□□□ 1.4
UPF3A-206ENST00000480362 KIF1AQ12756 1690 aa23.81■■□□□ 1.4
UPF3A-206ENST00000480362 CCDC184Q52MB2 194 aa23.81■■□□□ 1.4
UPF3A-206ENST00000480362 TTC21AQ8NDW8 1320 aa23.81■■□□□ 1.4
UPF3A-206ENST00000480362 PPP2R1AP30153 589 aa23.8■■□□□ 1.4
UPF3A-206ENST00000480362 ZRANB1Q9UGI0 708 aa23.8■■□□□ 1.4
UPF3A-206ENST00000480362 BRD4O60885 1362 aaPredicted RBP23.79■■□□□ 1.4
UPF3A-206ENST00000480362 TNNT2P45379 298 aaPredicted RBP23.78■■□□□ 1.4
UPF3A-206ENST00000480362 NLRP13Q86W25 1043 aa23.78■■□□□ 1.4
UPF3A-206ENST00000480362 ANKRD26Q9UPS8 1709 aa23.78■■□□□ 1.4
UPF3A-206ENST00000480362 PAK3O75914 559 aaPredicted RBP23.77■■□□□ 1.4
UPF3A-206ENST00000480362 BRINP3Q76B58 766 aa23.77■■□□□ 1.4
UPF3A-206ENST00000480362 KRT28Q7Z3Y7 464 aa23.77■■□□□ 1.4
UPF3A-206ENST00000480362 MRS2Q9HD23 443 aa23.77■■□□□ 1.4
UPF3A-206ENST00000480362 XPCQ01831 940 aaPredicted RBP23.76■■□□□ 1.39
UPF3A-206ENST00000480362 COG3Q96JB2 828 aa23.76■■□□□ 1.39
UPF3A-206ENST00000480362 DDX17Q92841 729 aaKnown RBP23.74■■□□□ 1.39
UPF3A-206ENST00000480362 ABTB2Q8N961 1025 aa23.72■■□□□ 1.39
UPF3A-206ENST00000480362 NPHP3Q7Z494 1330 aa23.72■■□□□ 1.39
UPF3A-206ENST00000480362 USP31Q70CQ4 1352 aa23.71■■□□□ 1.39
UPF3A-206ENST00000480362 NLRP6P59044 892 aa23.7■■□□□ 1.38
UPF3A-206ENST00000480362 PIK3C2AO00443 1686 aa23.7■■□□□ 1.38
UPF3A-206ENST00000480362 OVOS2A0A0J9YW53 1432 aa23.69■■□□□ 1.38
UPF3A-206ENST00000480362 OVOS2Q6IE36 1432 aa23.69■■□□□ 1.38
UPF3A-206ENST00000480362 SCAF1Q9H7N4 1312 aaKnown RBP23.69■■□□□ 1.38
UPF3A-206ENST00000480362 NUTM2GQ5VZR2 741 aa23.69■■□□□ 1.38
UPF3A-206ENST00000480362 TRPM3Q9HCF6 1732 aaPredicted RBP23.68■■□□□ 1.38
UPF3A-206ENST00000480362 FBLN1P23142 703 aa23.67■■□□□ 1.38
UPF3A-206ENST00000480362 MTHFSP49914 203 aa23.67■■□□□ 1.38
UPF3A-206ENST00000480362 SBNO1A3KN83 1393 aa23.65■■□□□ 1.38
UPF3A-206ENST00000480362 TOM1O60784 492 aa23.65■■□□□ 1.38
UPF3A-206ENST00000480362 LMOD2Q6P5Q4 547 aa23.65■■□□□ 1.38
UPF3A-206ENST00000480362 PXDNQ92626 1479 aa23.64■■□□□ 1.38
UPF3A-206ENST00000480362 AATKQ6ZMQ8 1374 aa23.64■■□□□ 1.37
UPF3A-206ENST00000480362 FAM9BQ8IZU0 186 aa23.63■■□□□ 1.37
UPF3A-206ENST00000480362 CERKQ8TCT0 537 aa23.63■■□□□ 1.37
UPF3A-206ENST00000480362 PNISRQ8TF01 805 aaKnown RBP23.63■■□□□ 1.37
UPF3A-206ENST00000480362 SOS2Q07890 1332 aaPredicted RBP23.62■■□□□ 1.37
UPF3A-206ENST00000480362 POLKQ9UBT6 870 aa23.62■■□□□ 1.37
UPF3A-206ENST00000480362 USP54Q70EL1 1684 aa23.62■■□□□ 1.37
UPF3A-206ENST00000480362 IQSEC2Q5JU85 1478 aa23.62■■□□□ 1.37
UPF3A-206ENST00000480362 MARF1Q9Y4F3 1742 aaKnown RBP23.61■■□□□ 1.37
UPF3A-206ENST00000480362 ROBO1Q9Y6N7 1651 aa23.6■■□□□ 1.37
UPF3A-206ENST00000480362 SPATA31A3Q5VYP0 1347 aa23.6■■□□□ 1.37
UPF3A-206ENST00000480362 SOX12O15370 315 aa23.6■■□□□ 1.37
UPF3A-206ENST00000480362 CFAP53Q96M91 514 aa23.6■■□□□ 1.37
UPF3A-206ENST00000480362 ALS2Q96Q42 1657 aa23.6■■□□□ 1.37
UPF3A-206ENST00000480362 NHSL1Q5SYE7 1610 aa23.59■■□□□ 1.37
UPF3A-206ENST00000480362 MAP2P11137 1827 aaKnown RBP23.59■■□□□ 1.37
UPF3A-206ENST00000480362 UBAP1LF5GYI3 381 aa23.59■■□□□ 1.37
UPF3A-206ENST00000480362 RRS1Q15050 365 aaKnown RBP23.59■■□□□ 1.37
UPF3A-206ENST00000480362 TNS3Q68CZ2 1445 aa23.59■■□□□ 1.37
UPF3A-206ENST00000480362 EMILIN1Q9Y6C2 1016 aa23.58■■□□□ 1.37
UPF3A-206ENST00000480362 PPM1GO15355 546 aaPredicted RBP23.57■■□□□ 1.36
UPF3A-206ENST00000480362 PIP4K2BP78356 416 aa23.57■■□□□ 1.36
UPF3A-206ENST00000480362 YTHDC1Q96MU7 727 aaKnown RBP23.57■■□□□ 1.36
UPF3A-206ENST00000480362 PLEKHG5O94827 1062 aa23.56■■□□□ 1.36
UPF3A-206ENST00000480362 KCNH5Q8NCM2 988 aa23.55■■□□□ 1.36
UPF3A-206ENST00000480362 ARHGEF10O15013 1369 aa23.54■■□□□ 1.36
UPF3A-206ENST00000480362 SMG6Q86US8 1419 aaKnown RBP23.54■■□□□ 1.36
UPF3A-206ENST00000480362 USP19O94966 1318 aa23.54■■□□□ 1.36
UPF3A-206ENST00000480362 MAP3K19Q56UN5 1328 aa23.53■■□□□ 1.36
UPF3A-206ENST00000480362 PNPLA6Q8IY17 1366 aa23.52■■□□□ 1.36
UPF3A-206ENST00000480362 GCP02774 474 aa23.52■■□□□ 1.36
UPF3A-206ENST00000480362 WDR43Q15061 677 aaKnown RBP eCLIP23.52■■□□□ 1.36
UPF3A-206ENST00000480362 SLIT3O75094 1523 aa23.52■■□□□ 1.36
UPF3A-206ENST00000480362 INSRP06213 1382 aa23.52■■□□□ 1.36
UPF3A-206ENST00000480362 AHDC1Q5TGY3 1603 aaPredicted RBP23.51■■□□□ 1.35
UPF3A-206ENST00000480362 MED1Q15648 1581 aaPredicted RBP23.5■■□□□ 1.35
UPF3A-206ENST00000480362 COL3A1P02461 1466 aaPredicted RBP23.49■■□□□ 1.35
UPF3A-206ENST00000480362 CDK12Q9NYV4 1490 aaPredicted RBP23.49■■□□□ 1.35
UPF3A-206ENST00000480362 DIAPH1O60610 1272 aaKnown RBP23.49■■□□□ 1.35
UPF3A-206ENST00000480362 AMPHP49418 695 aa23.49■■□□□ 1.35
UPF3A-206ENST00000480362 LRRC59Q96AG4 307 aaKnown RBP23.49■■□□□ 1.35
UPF3A-206ENST00000480362 ADAMTS8Q9UP79 889 aa23.49■■□□□ 1.35
UPF3A-206ENST00000480362 NFAT5O94916 1531 aa23.49■■□□□ 1.35
UPF3A-206ENST00000480362 CABLES1Q8TDN4 633 aa23.48■■□□□ 1.35
UPF3A-206ENST00000480362 NUDCQ9Y266 331 aa23.47■■□□□ 1.35
UPF3A-206ENST00000480362 PEAK1Q9H792 1746 aa23.47■■□□□ 1.35
UPF3A-206ENST00000480362 SHPRHQ149N8 1683 aa23.46■■□□□ 1.35
UPF3A-206ENST00000480362 HSP90AB2PQ58FF8 381 aa23.45■■□□□ 1.34
UPF3A-206ENST00000480362 PHLPP1O60346 1717 aa23.45■■□□□ 1.34
UPF3A-206ENST00000480362 FLT4P35916 1363 aa23.44■■□□□ 1.34
UPF3A-206ENST00000480362 KIF24Q5T7B8 1368 aa23.44■■□□□ 1.34
UPF3A-206ENST00000480362 ZBTB7CA1YPR0 619 aa23.44■■□□□ 1.34
UPF3A-206ENST00000480362 ARHGEF25Q86VW2 580 aa23.44■■□□□ 1.34
UPF3A-206ENST00000480362 PHRF1Q9P1Y6 1649 aaKnown RBP23.44■■□□□ 1.34
UPF3A-206ENST00000480362 U2SURPO15042 1029 aaKnown RBP23.43■■□□□ 1.34
UPF3A-206ENST00000480362 HOXC9P31274 260 aa23.43■■□□□ 1.34
UPF3A-206ENST00000480362 IL13P35225 146 aa23.43■■□□□ 1.34
UPF3A-206ENST00000480362 ZC3H6P61129 1189 aaKnown RBP23.43■■□□□ 1.34
UPF3A-206ENST00000480362 LTN1O94822 1766 aa23.42■■□□□ 1.34
UPF3A-206ENST00000480362 CRYBG1Q9Y4K1 1723 aa23.42■■□□□ 1.34
UPF3A-206ENST00000480362 U2AF1L5P0DN76 240 aaPredicted RBP23.41■■□□□ 1.34
UPF3A-206ENST00000480362 HNRNPUQ00839 825 aaKnown RBP eCLIP23.41■■□□□ 1.34
UPF3A-206ENST00000480362 U2AF1Q01081 240 aaKnown RBP eCLIP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms