RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 SOWAHBA6NEL2 793 aa9.56□□□□□ -0.88
UPF3A-205ENST00000479712 GPR37L1O60883 481 aa9.56□□□□□ -0.88
UPF3A-205ENST00000479712 PPP4CP60510 307 aa9.56□□□□□ -0.88
UPF3A-205ENST00000479712 KCTD12Q96CX2 325 aaKnown RBP9.56□□□□□ -0.88
UPF3A-205ENST00000479712 HPS5Q9UPZ3 1129 aa9.56□□□□□ -0.88
UPF3A-205ENST00000479712 SMARCA4P51532 1647 aa9.56□□□□□ -0.88
UPF3A-205ENST00000479712 EPS8L1Q8TE68 723 aa9.55□□□□□ -0.88
UPF3A-205ENST00000479712 ADGRL1O94910 1474 aa9.54□□□□□ -0.88
UPF3A-205ENST00000479712 PER1O15534 1290 aaPredicted RBP9.54□□□□□ -0.88
UPF3A-205ENST00000479712 PDIA4P13667 645 aaKnown RBP9.54□□□□□ -0.88
UPF3A-205ENST00000479712 BCAMP50895 628 aa9.54□□□□□ -0.88
UPF3A-205ENST00000479712 NR6A1Q15406 480 aa9.54□□□□□ -0.88
UPF3A-205ENST00000479712 DESI1Q6ICB0 168 aa9.54□□□□□ -0.88
UPF3A-205ENST00000479712 KIF13AQ9H1H9 1805 aa9.54□□□□□ -0.88
UPF3A-205ENST00000479712 APLP1P51693 650 aa9.53□□□□□ -0.88
UPF3A-205ENST00000479712 VAC14Q08AM6 782 aa9.53□□□□□ -0.88
UPF3A-205ENST00000479712 BLOC1S3Q6QNY0 202 aa9.53□□□□□ -0.88
UPF3A-205ENST00000479712 RNF19BQ6ZMZ0 732 aa9.53□□□□□ -0.88
UPF3A-205ENST00000479712 WNT2BQ93097 391 aa9.53□□□□□ -0.88
UPF3A-205ENST00000479712 TSR3Q9UJK0 312 aaKnown RBP9.53□□□□□ -0.88
UPF3A-205ENST00000479712 HDGFL1Q5TGJ6 251 aa9.52□□□□□ -0.89
UPF3A-205ENST00000479712 USB1Q9BQ65 265 aaKnown RBP9.52□□□□□ -0.89
UPF3A-205ENST00000479712 SALL2Q9Y467 1007 aaPredicted RBP9.51□□□□□ -0.89
UPF3A-205ENST00000479712 PCDHB3Q9Y5E6 796 aa9.51□□□□□ -0.89
UPF3A-205ENST00000479712 CADPSQ9ULU8 1353 aa9.5□□□□□ -0.89
UPF3A-205ENST00000479712 NR1I2O75469 434 aa9.5□□□□□ -0.89
UPF3A-205ENST00000479712 BRICD5Q6PL45 260 aa9.5□□□□□ -0.89
UPF3A-205ENST00000479712 LYPD8Q6UX82 237 aa9.5□□□□□ -0.89
UPF3A-205ENST00000479712 PNMA1Q8ND90 353 aa9.5□□□□□ -0.89
UPF3A-205ENST00000479712 ADAMTS19Q8TE59 1207 aa9.5□□□□□ -0.89
UPF3A-205ENST00000479712 DCAF1Q9Y4B6 1507 aa9.5□□□□□ -0.89
UPF3A-205ENST00000479712 FMNL1O95466 1100 aaPredicted RBP9.49□□□□□ -0.89
UPF3A-205ENST00000479712 TRIM26Q12899 539 aaPredicted RBP9.49□□□□□ -0.89
UPF3A-205ENST00000479712 SCUBE3Q8IX30 993 aa9.49□□□□□ -0.89
UPF3A-205ENST00000479712 PODXL2Q9NZ53 605 aa9.49□□□□□ -0.89
UPF3A-205ENST00000479712 KDM6BO15054 1643 aa9.48□□□□□ -0.89
UPF3A-205ENST00000479712 ZCCHC6Q5VYS8 1495 aaKnown RBP9.47□□□□□ -0.89
UPF3A-205ENST00000479712 URB2Q14146 1524 aaKnown RBP9.47□□□□□ -0.89
UPF3A-205ENST00000479712 THAP11Q96EK4 314 aa9.47□□□□□ -0.89
UPF3A-205ENST00000479712 PPP1R15AO75807 674 aaPredicted RBP9.46□□□□□ -0.9
UPF3A-205ENST00000479712 RGS20O76081 388 aa9.46□□□□□ -0.9
UPF3A-205ENST00000479712 SOX11P35716 441 aa9.46□□□□□ -0.9
UPF3A-205ENST00000479712 PTPN5P54829 565 aa9.46□□□□□ -0.9
UPF3A-205ENST00000479712 IFFO2Q5TF58 517 aa9.46□□□□□ -0.9
UPF3A-205ENST00000479712 WBP1LQ9NX94 342 aa9.46□□□□□ -0.9
UPF3A-205ENST00000479712 FANCD2Q9BXW9 1451 aa9.46□□□□□ -0.9
UPF3A-205ENST00000479712 JUNDP17535 347 aa9.45□□□□□ -0.9
UPF3A-205ENST00000479712 ALG2Q9H553 416 aa9.45□□□□□ -0.9
UPF3A-205ENST00000479712 EIF4G3O43432 1585 aaKnown RBP9.45□□□□□ -0.9
UPF3A-205ENST00000479712 RETREG2Q8NC44 543 aa9.44□□□□□ -0.9
UPF3A-205ENST00000479712 GAPVD1Q14C86 1478 aa9.43□□□□□ -0.9
UPF3A-205ENST00000479712 SEMA3FQ13275 785 aa9.43□□□□□ -0.9
UPF3A-205ENST00000479712 PTPRNQ16849 979 aa9.43□□□□□ -0.9
UPF3A-205ENST00000479712 ACIN1Q9UKV3 1341 aaKnown RBP9.42□□□□□ -0.9
UPF3A-205ENST00000479712 F12P00748 615 aaPredicted RBP9.42□□□□□ -0.9
UPF3A-205ENST00000479712 EIF4G2P78344 907 aaKnown RBP eCLIP9.42□□□□□ -0.9
UPF3A-205ENST00000479712 MSS51Q4VC12 460 aa9.42□□□□□ -0.9
UPF3A-205ENST00000479712 TRAIPQ9BWF2 469 aa9.42□□□□□ -0.9
UPF3A-205ENST00000479712 PPP1R12CQ9BZL4 782 aa9.42□□□□□ -0.9
UPF3A-205ENST00000479712 MAP10Q9P2G4 905 aa9.42□□□□□ -0.9
UPF3A-205ENST00000479712 FKBPLQ9UIM3 349 aa9.42□□□□□ -0.9
UPF3A-205ENST00000479712 RFX1P22670 979 aa9.41□□□□□ -0.9
UPF3A-205ENST00000479712 COPS2P61201 443 aa9.41□□□□□ -0.9
UPF3A-205ENST00000479712 NR1H3Q13133 447 aa9.41□□□□□ -0.9
UPF3A-205ENST00000479712 CFAP70Q5T0N1 1121 aa9.41□□□□□ -0.9
UPF3A-205ENST00000479712 THSD4Q6ZMP0 1018 aa9.41□□□□□ -0.9
UPF3A-205ENST00000479712 PBXIP1Q96AQ6 731 aa9.41□□□□□ -0.9
UPF3A-205ENST00000479712 IRX2Q9BZI1 471 aaPredicted RBP9.41□□□□□ -0.9
UPF3A-205ENST00000479712 CLASP1Q7Z460 1538 aa9.41□□□□□ -0.9
UPF3A-205ENST00000479712 ZBTB7CA1YPR0 619 aa9.4□□□□□ -0.9
UPF3A-205ENST00000479712 CTHP32929 405 aa9.4□□□□□ -0.9
UPF3A-205ENST00000479712 SPSB2Q99619 263 aa9.4□□□□□ -0.9
UPF3A-205ENST00000479712 ZC3H4Q9UPT8 1303 aaKnown RBP9.39□□□□□ -0.91
UPF3A-205ENST00000479712 PALM3A6NDB9 673 aaPredicted RBP9.39□□□□□ -0.91
UPF3A-205ENST00000479712 ZBBXA8MT70 800 aa9.39□□□□□ -0.91
UPF3A-205ENST00000479712 FBXO45P0C2W1 286 aa9.39□□□□□ -0.91
UPF3A-205ENST00000479712 UCN2Q96RP3 112 aa9.39□□□□□ -0.91
UPF3A-205ENST00000479712 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.38□□□□□ -0.91
UPF3A-205ENST00000479712 DXOO77932 396 aaKnown RBP9.38□□□□□ -0.91
UPF3A-205ENST00000479712 CCNYL3P0C7X3 344 aa9.38□□□□□ -0.91
UPF3A-205ENST00000479712 FAM160A2Q8N612 972 aaPredicted RBP9.38□□□□□ -0.91
UPF3A-205ENST00000479712 IFT140Q96RY7 1462 aa9.38□□□□□ -0.91
UPF3A-205ENST00000479712 A0A0G2JS52 829 aa9.37□□□□□ -0.91
UPF3A-205ENST00000479712 NYAP1Q6ZVC0 841 aa9.37□□□□□ -0.91
UPF3A-205ENST00000479712 NUDT12Q9BQG2 462 aa9.37□□□□□ -0.91
UPF3A-205ENST00000479712 PRDM9Q9NQV7 894 aa9.37□□□□□ -0.91
UPF3A-205ENST00000479712 TFIP11Q9UBB9 837 aaKnown RBP9.37□□□□□ -0.91
UPF3A-205ENST00000479712 LMOD1P29536 600 aaPredicted RBP9.36□□□□□ -0.91
UPF3A-205ENST00000479712 MMP16P51512 607 aa9.36□□□□□ -0.91
UPF3A-205ENST00000479712 EVA1BQ9NVM1 165 aa9.36□□□□□ -0.91
UPF3A-205ENST00000479712 TLL1O43897 1013 aa9.35□□□□□ -0.91
UPF3A-205ENST00000479712 PDE4CQ08493 712 aa9.35□□□□□ -0.91
UPF3A-205ENST00000479712 FAM69CQ0P6D2 419 aa9.35□□□□□ -0.91
UPF3A-205ENST00000479712 KCNH2Q12809 1159 aa9.35□□□□□ -0.91
UPF3A-205ENST00000479712 KCTD17Q8N5Z5 321 aa9.35□□□□□ -0.91
UPF3A-205ENST00000479712 ADH1BP00325 375 aa9.34□□□□□ -0.91
UPF3A-205ENST00000479712 ARMC2Q8NEN0 867 aa9.34□□□□□ -0.91
UPF3A-205ENST00000479712 AQRO60306 1485 aaKnown RBP eCLIP9.34□□□□□ -0.91
UPF3A-205ENST00000479712 ZPR1O75312 459 aa9.33□□□□□ -0.92
UPF3A-205ENST00000479712 SRPK2P78362 688 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms