RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TTC37Q6PGP7 1564 aa11.06□□□□□ -0.64
CCDC88A-213ENST00000476903 ADGRL1O94910 1474 aa11.06□□□□□ -0.64
CCDC88A-213ENST00000476903 CRIPAKQ8N1N5 446 aa11.05□□□□□ -0.64
CCDC88A-213ENST00000476903 KCNV2Q8TDN2 545 aa11.05□□□□□ -0.64
CCDC88A-213ENST00000476903 LRRIQ1Q96JM4 1722 aa11.05□□□□□ -0.64
CCDC88A-213ENST00000476903 DACH1Q9UI36 760 aa11.05□□□□□ -0.64
CCDC88A-213ENST00000476903 ATP1B4Q9UN42 357 aaPredicted RBP11.05□□□□□ -0.64
CCDC88A-213ENST00000476903 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.04□□□□□ -0.64
CCDC88A-213ENST00000476903 PUS10Q3MIT2 529 aaKnown RBP11.03□□□□□ -0.64
CCDC88A-213ENST00000476903 LMOD2Q6P5Q4 547 aa11.03□□□□□ -0.64
CCDC88A-213ENST00000476903 PXYLP1Q8TE99 480 aa11.03□□□□□ -0.64
CCDC88A-213ENST00000476903 CDK11AQ9UQ88 783 aaPredicted RBP11.03□□□□□ -0.64
CCDC88A-213ENST00000476903 MYO5CQ9NQX4 1742 aa11.03□□□□□ -0.64
CCDC88A-213ENST00000476903 PCF11O94913 1555 aaKnown RBP11.03□□□□□ -0.64
CCDC88A-213ENST00000476903 FANCAO15360 1455 aa11.02□□□□□ -0.65
CCDC88A-213ENST00000476903 AVPP01185 164 aa11.02□□□□□ -0.65
CCDC88A-213ENST00000476903 TOR4AQ9NXH8 423 aa11.02□□□□□ -0.65
CCDC88A-213ENST00000476903 FRMPD1Q5SYB0 1578 aa11.02□□□□□ -0.65
CCDC88A-213ENST00000476903 KIF14Q15058 1648 aa11.02□□□□□ -0.65
CCDC88A-213ENST00000476903 RICTORQ6R327 1708 aa11.01□□□□□ -0.65
CCDC88A-213ENST00000476903 SPSB2Q99619 263 aa11.01□□□□□ -0.65
CCDC88A-213ENST00000476903 AKNAQ7Z591 1439 aa11.01□□□□□ -0.65
CCDC88A-213ENST00000476903 CCDC18Q5T9S5 1454 aa11□□□□□ -0.65
CCDC88A-213ENST00000476903 NUTM2FA1L443 756 aa11□□□□□ -0.65
CCDC88A-213ENST00000476903 RAPGEF3O95398 923 aa11□□□□□ -0.65
CCDC88A-213ENST00000476903 FOXC1Q12948 553 aa11□□□□□ -0.65
CCDC88A-213ENST00000476903 CLIP1P30622 1438 aa11□□□□□ -0.65
CCDC88A-213ENST00000476903 TROQ12816 1431 aaPredicted RBP11□□□□□ -0.65
CCDC88A-213ENST00000476903 CASKIN1Q8WXD9 1431 aa11□□□□□ -0.65
CCDC88A-213ENST00000476903 DENND4BO75064 1496 aaPredicted RBP11□□□□□ -0.65
CCDC88A-213ENST00000476903 RPIAP49247 311 aa10.99□□□□□ -0.65
CCDC88A-213ENST00000476903 THAP11Q96EK4 314 aa10.99□□□□□ -0.65
CCDC88A-213ENST00000476903 PLCH2O75038 1416 aa10.99□□□□□ -0.65
CCDC88A-213ENST00000476903 FYCO1Q9BQS8 1478 aa10.99□□□□□ -0.65
CCDC88A-213ENST00000476903 FCHSD2O94868 740 aa10.97□□□□□ -0.65
CCDC88A-213ENST00000476903 ARHGEF40Q8TER5 1519 aa10.97□□□□□ -0.65
CCDC88A-213ENST00000476903 ZMYM4Q5VZL5 1548 aa10.95□□□□□ -0.66
CCDC88A-213ENST00000476903 OATP04181 439 aa10.95□□□□□ -0.66
CCDC88A-213ENST00000476903 MORN1Q5T089 497 aa10.95□□□□□ -0.66
CCDC88A-213ENST00000476903 METTL3Q86U44 580 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-213ENST00000476903 FAM160A2Q8N612 972 aaPredicted RBP10.95□□□□□ -0.66
CCDC88A-213ENST00000476903 GMPR2Q9P2T1 348 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-213ENST00000476903 ARHGAP5Q13017 1502 aa10.94□□□□□ -0.66
CCDC88A-213ENST00000476903 TSHZ2Q9NRE2 1034 aa10.94□□□□□ -0.66
CCDC88A-213ENST00000476903 CDC42BPBQ9Y5S2 1711 aa10.94□□□□□ -0.66
CCDC88A-213ENST00000476903 POGZQ7Z3K3 1410 aa10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 BCORL1Q5H9F3 1711 aa10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 ADAMTSL3P82987 1691 aa10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 SMCPP49901 116 aaPredicted RBP10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 NFX1Q12986 1120 aaKnown RBP10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 EFCAB2Q5VUJ9 269 aa10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 FCF1Q9Y324 198 aaKnown RBP10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 PREX2Q70Z35 1606 aa10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 ZFYVE16Q7Z3T8 1539 aa10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 MAGI2Q86UL8 1455 aa10.93□□□□□ -0.66
CCDC88A-213ENST00000476903 SCAPERQ9BY12 1400 aa10.92□□□□□ -0.66
CCDC88A-213ENST00000476903 CDC42BPAQ5VT25 1732 aa10.92□□□□□ -0.66
CCDC88A-213ENST00000476903 WFS1O76024 890 aa10.91□□□□□ -0.66
CCDC88A-213ENST00000476903 CEP162Q5TB80 1403 aa10.91□□□□□ -0.66
CCDC88A-213ENST00000476903 ARID4BQ4LE39 1312 aaPredicted RBP10.9□□□□□ -0.66
CCDC88A-213ENST00000476903 ZNF518AQ6AHZ1 1483 aa10.9□□□□□ -0.66
CCDC88A-213ENST00000476903 AXIN1O15169 862 aa10.9□□□□□ -0.66
CCDC88A-213ENST00000476903 CD2BP2O95400 341 aaKnown RBP10.9□□□□□ -0.66
CCDC88A-213ENST00000476903 CTC1Q2NKJ3 1217 aa10.9□□□□□ -0.66
CCDC88A-213ENST00000476903 LCE2CQ5TA81 110 aa10.9□□□□□ -0.66
CCDC88A-213ENST00000476903 FUT2Q10981 343 aa10.89□□□□□ -0.67
CCDC88A-213ENST00000476903 CYP4X1Q8N118 509 aa10.89□□□□□ -0.67
CCDC88A-213ENST00000476903 MADDQ8WXG6 1647 aa10.88□□□□□ -0.67
CCDC88A-213ENST00000476903 SEMA3EO15041 775 aa10.88□□□□□ -0.67
CCDC88A-213ENST00000476903 KDM5CP41229 1560 aa10.88□□□□□ -0.67
CCDC88A-213ENST00000476903 RSPH4AQ5TD94 716 aa10.88□□□□□ -0.67
CCDC88A-213ENST00000476903 YEATS2Q9ULM3 1422 aa10.88□□□□□ -0.67
CCDC88A-213ENST00000476903 SLC27A5Q9Y2P5 690 aa10.88□□□□□ -0.67
CCDC88A-213ENST00000476903 ITSN2Q9NZM3 1697 aa10.88□□□□□ -0.67
CCDC88A-213ENST00000476903 ABCC1P33527 1531 aa10.88□□□□□ -0.67
CCDC88A-213ENST00000476903 SIGLEC1Q9BZZ2 1709 aa10.87□□□□□ -0.67
CCDC88A-213ENST00000476903 HECW2Q9P2P5 1572 aa10.87□□□□□ -0.67
CCDC88A-213ENST00000476903 C11orf95C9JLR9 678 aaPredicted RBP10.87□□□□□ -0.67
CCDC88A-213ENST00000476903 WIPF1O43516 503 aa10.87□□□□□ -0.67
CCDC88A-213ENST00000476903 FECHP22830 423 aa10.87□□□□□ -0.67
CCDC88A-213ENST00000476903 PRDM9Q9NQV7 894 aa10.87□□□□□ -0.67
CCDC88A-213ENST00000476903 DAXXQ9UER7 740 aaPredicted RBP10.87□□□□□ -0.67
CCDC88A-213ENST00000476903 SALL2Q9Y467 1007 aaPredicted RBP10.87□□□□□ -0.67
CCDC88A-213ENST00000476903 PTPRMP28827 1452 aa10.87□□□□□ -0.67
CCDC88A-213ENST00000476903 RIMS1Q86UR5 1692 aaKnown RBP10.86□□□□□ -0.67
CCDC88A-213ENST00000476903 ATP6V1AP38606 617 aa10.86□□□□□ -0.67
CCDC88A-213ENST00000476903 HIC1Q14526 733 aa10.86□□□□□ -0.67
CCDC88A-213ENST00000476903 BRICD5Q6PL45 260 aa10.86□□□□□ -0.67
CCDC88A-213ENST00000476903 ATP10AO60312 1499 aa10.86□□□□□ -0.67
CCDC88A-213ENST00000476903 C9orf84Q5VXU9 1444 aa10.85□□□□□ -0.67
CCDC88A-213ENST00000476903 MTUS2Q5JR59 1369 aa10.85□□□□□ -0.67
CCDC88A-213ENST00000476903 FER1L4A9Z1Z3 1794 aa10.85□□□□□ -0.67
CCDC88A-213ENST00000476903 EHBP1L1Q8N3D4 1523 aa10.84□□□□□ -0.67
CCDC88A-213ENST00000476903 GPR37O15354 613 aa10.84□□□□□ -0.67
CCDC88A-213ENST00000476903 FMNL1O95466 1100 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-213ENST00000476903 SMPD1P17405 629 aa10.84□□□□□ -0.67
CCDC88A-213ENST00000476903 GPATCH8Q9UKJ3 1502 aaKnown RBP10.84□□□□□ -0.67
CCDC88A-213ENST00000476903 SAMD9LQ8IVG5 1584 aa10.83□□□□□ -0.68
CCDC88A-213ENST00000476903 GCGRP47871 477 aa10.83□□□□□ -0.68
CCDC88A-213ENST00000476903 AFAP1Q8N556 730 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms