RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 HSP90AB1P08238 724 aaKnown RBP7.66□□□□□ -1.18
HERC4-209ENST00000473533 HAP1P54257 671 aaPredicted RBP7.66□□□□□ -1.18
HERC4-209ENST00000473533 MFAP1P55081 439 aaKnown RBP7.66□□□□□ -1.18
HERC4-209ENST00000473533 ITPRIPQ8IWB1 547 aa7.66□□□□□ -1.18
HERC4-209ENST00000473533 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.66□□□□□ -1.18
HERC4-209ENST00000473533 BRPF1P55201 1214 aaPredicted RBP7.66□□□□□ -1.18
HERC4-209ENST00000473533 ERCC6L2Q5T890 1561 aa7.66□□□□□ -1.18
HERC4-209ENST00000473533 NCOA3Q9Y6Q9 1424 aa7.66□□□□□ -1.18
HERC4-209ENST00000473533 ANKRD26Q9UPS8 1709 aa7.66□□□□□ -1.18
HERC4-209ENST00000473533 GLI2P10070 1586 aa7.65□□□□□ -1.18
HERC4-209ENST00000473533 HECW2Q9P2P5 1572 aa7.65□□□□□ -1.18
HERC4-209ENST00000473533 CHGAP10645 457 aaKnown RBP7.65□□□□□ -1.18
HERC4-209ENST00000473533 TRAK1Q9UPV9 953 aa7.65□□□□□ -1.18
HERC4-209ENST00000473533 RRP7AQ9Y3A4 280 aaKnown RBP7.65□□□□□ -1.18
HERC4-209ENST00000473533 HSP90AA1P07900 732 aaKnown RBP7.65□□□□□ -1.18
HERC4-209ENST00000473533 RLBP1P12271 317 aa7.65□□□□□ -1.18
HERC4-209ENST00000473533 BMP2KLQ5H9B9 411 aa7.65□□□□□ -1.19
HERC4-209ENST00000473533 ARHGAP45Q92619 1136 aa7.65□□□□□ -1.19
HERC4-209ENST00000473533 SLC12A5Q9H2X9 1139 aa7.65□□□□□ -1.19
HERC4-209ENST00000473533 MLH3Q9UHC1 1453 aa7.65□□□□□ -1.19
HERC4-209ENST00000473533 TMPOP42166 694 aaKnown RBP7.64□□□□□ -1.19
HERC4-209ENST00000473533 UGGT1Q9NYU2 1555 aa7.64□□□□□ -1.19
HERC4-209ENST00000473533 KIDINS220Q9ULH0 1771 aa7.64□□□□□ -1.19
HERC4-209ENST00000473533 NUCB1Q02818 461 aa7.64□□□□□ -1.19
HERC4-209ENST00000473533 ARHGEF28Q8N1W1 1705 aaKnown RBP7.64□□□□□ -1.19
HERC4-209ENST00000473533 ASXL2Q76L83 1435 aa7.64□□□□□ -1.19
HERC4-209ENST00000473533 XRCC6P12956 609 aaKnown RBP eCLIP7.64□□□□□ -1.19
HERC4-209ENST00000473533 LMOD3Q0VAK6 560 aa7.64□□□□□ -1.19
HERC4-209ENST00000473533 HDGFL2Q7Z4V5 671 aaPredicted RBP7.64□□□□□ -1.19
HERC4-209ENST00000473533 GRPEL1Q9HAV7 217 aa7.64□□□□□ -1.19
HERC4-209ENST00000473533 FRMPD1Q5SYB0 1578 aa7.63□□□□□ -1.19
HERC4-209ENST00000473533 PPIP5K1Q6PFW1 1433 aa7.63□□□□□ -1.19
HERC4-209ENST00000473533 TRIM27P14373 513 aa7.63□□□□□ -1.19
HERC4-209ENST00000473533 TNNT2P45379 298 aaPredicted RBP7.63□□□□□ -1.19
HERC4-209ENST00000473533 EXOSC9Q06265 439 aaKnown RBP7.63□□□□□ -1.19
HERC4-209ENST00000473533 KIF24Q5T7B8 1368 aa7.63□□□□□ -1.19
HERC4-209ENST00000473533 IBTKQ9P2D0 1353 aaPredicted RBP7.63□□□□□ -1.19
HERC4-209ENST00000473533 NPATQ14207 1427 aa7.63□□□□□ -1.19
HERC4-209ENST00000473533 DIAPH1O60610 1272 aaKnown RBP7.63□□□□□ -1.19
HERC4-209ENST00000473533 FCHSD2O94868 740 aa7.63□□□□□ -1.19
HERC4-209ENST00000473533 NAP1L5Q96NT1 182 aaPredicted RBP7.63□□□□□ -1.19
HERC4-209ENST00000473533 BCL2L13Q9BXK5 485 aa7.63□□□□□ -1.19
HERC4-209ENST00000473533 ZBTB40Q9NUA8 1239 aa7.63□□□□□ -1.19
HERC4-209ENST00000473533 CDC42BPGQ6DT37 1551 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 CAMSAP1Q5T5Y3 1602 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 U2SURPO15042 1029 aaKnown RBP7.62□□□□□ -1.19
HERC4-209ENST00000473533 RRP9O43818 475 aaKnown RBP7.62□□□□□ -1.19
HERC4-209ENST00000473533 TPM2P07951 284 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 CHD1LQ86WJ1 897 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 TULP4Q9NRJ4 1543 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 ARHGAP31Q2M1Z3 1444 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 PIK3C2BO00750 1634 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 CCDC173Q0VFZ6 552 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 CASC1Q6TDU7 716 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 SSH1Q8WYL5 1049 aa7.62□□□□□ -1.19
HERC4-209ENST00000473533 SLC52A1Q9NWF4 448 aa7.61□□□□□ -1.19
HERC4-209ENST00000473533 ABCC3O15438 1527 aa7.61□□□□□ -1.19
HERC4-209ENST00000473533 CLTCQ00610 1675 aaKnown RBP7.61□□□□□ -1.19
HERC4-209ENST00000473533 NPM1P06748 294 aaKnown RBP eCLIP7.61□□□□□ -1.19
HERC4-209ENST00000473533 NUCB2P80303 420 aa7.61□□□□□ -1.19
HERC4-209ENST00000473533 RAB3GAP1Q15042 981 aa7.61□□□□□ -1.19
HERC4-209ENST00000473533 PLEKHF1Q96S99 279 aa7.61□□□□□ -1.19
HERC4-209ENST00000473533 NOB1Q9ULX3 412 aaKnown RBP7.61□□□□□ -1.19
HERC4-209ENST00000473533 POGZQ7Z3K3 1410 aa7.61□□□□□ -1.19
HERC4-209ENST00000473533 COL3A1P02461 1466 aaPredicted RBP7.61□□□□□ -1.19
HERC4-209ENST00000473533 K7ELQ4 463 aaPredicted RBP7.61□□□□□ -1.19
HERC4-209ENST00000473533 RIPK4P57078 832 aa7.61□□□□□ -1.19
HERC4-209ENST00000473533 API5Q9BZZ5 524 aaKnown RBP7.61□□□□□ -1.19
HERC4-209ENST00000473533 ESPNB1AK53 854 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 CDC45O75419 566 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 GNAI1P63096 354 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 OSCARQ8IYS5 282 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 RRAGDQ9NQL2 400 aaPredicted RBP7.6□□□□□ -1.19
HERC4-209ENST00000473533 PIK3R4Q99570 1358 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 NEXMIFQ5QGS0 1516 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 RABEP1Q15276 862 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 CLEC17AQ6ZS10 378 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 TMEM57Q8N5G2 664 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 DDIT3P35638 169 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 SRPK2P78362 688 aaKnown RBP7.6□□□□□ -1.19
HERC4-209ENST00000473533 PNPLA6Q8IY17 1366 aa7.6□□□□□ -1.19
HERC4-209ENST00000473533 PTCH1Q13635 1447 aa7.59□□□□□ -1.19
HERC4-209ENST00000473533 GZF1Q9H116 711 aaPredicted RBP7.59□□□□□ -1.19
HERC4-209ENST00000473533 CWC22Q9HCG8 908 aaKnown RBP7.59□□□□□ -1.19
HERC4-209ENST00000473533 A0A1W2PP64 1363 aa7.59□□□□□ -1.19
HERC4-209ENST00000473533 HS1BP3Q53T59 392 aa7.59□□□□□ -1.19
HERC4-209ENST00000473533 TRIM35Q9UPQ4 493 aa7.59□□□□□ -1.19
HERC4-209ENST00000473533 TNPO1Q92973 898 aaKnown RBP7.59□□□□□ -1.2
HERC4-209ENST00000473533 TSR2Q969E8 191 aaKnown RBP7.59□□□□□ -1.2
HERC4-209ENST00000473533 ZNF692Q9BU19 519 aaPredicted RBP7.59□□□□□ -1.2
HERC4-209ENST00000473533 IFT57Q9NWB7 429 aa7.59□□□□□ -1.2
HERC4-209ENST00000473533 KIF20BQ96Q89 1820 aa7.58□□□□□ -1.2
HERC4-209ENST00000473533 TERF1P54274 439 aa7.58□□□□□ -1.2
HERC4-209ENST00000473533 CD109Q6YHK3 1445 aa7.58□□□□□ -1.2
HERC4-209ENST00000473533 KLHL40Q2TBA0 621 aa7.58□□□□□ -1.2
HERC4-209ENST00000473533 SPRYD3Q8NCJ5 442 aa7.58□□□□□ -1.2
HERC4-209ENST00000473533 TNNQ9UQP3 1299 aa7.58□□□□□ -1.2
HERC4-209ENST00000473533 NEO1Q92859 1461 aa7.58□□□□□ -1.2
HERC4-209ENST00000473533 HSP90AA2PQ14568 343 aaPredicted RBP7.58□□□□□ -1.2
HERC4-209ENST00000473533 ATP7BP35670 1465 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 700.1 ms